Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397429.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1847.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19503

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1884--5573
171
21.7
171
79
6
3088
38
11
13
35
1.81
1884--5573
341
10.8
334
76
9
2470
38
11
13
35
1.81
5071--5103
16
2.0
17
88
5
50
57
6
3
33
1.38
6288--7447
172
6.8
170
73
6
684
37
10
13
35
1.80
7493--7818
170
1.9
170
80
2
377
39
12
15
33
1.84
7889--8542
172
3.8
171
71
6
486
38
10
13
34
1.80
8972--9285
171
1.9
160
79
9
344
37
10
12
35
1.78
11007--11443
170
2.6
169
75
1
408
39
9
13
34
1.77
10548--11814
171
7.4
171
71
5
734
35
10
13
35
1.80
12980--13842
171
5.0
170
80
5
839
38
11
13
36
1.81
12980--13839
341
2.5
340
80
5
930
37
11
13
36
1.81
14124--14527
176
2.3
173
84
3
488
40
11
13
35
1.80
14836--15144
172
1.8
170
81
6
392
38
8
13
39
1.76
15686--17142
170
8.5
169
78
8
1253
40
11
12
35
1.80
15686--17135
346
4.2
340
79
9
1324
40
11
12
35
1.80
17347--17921
170
3.4
171
76
4
527
36
12
13
35
1.83
19127--19503
170
2.2
170
80
1
423
38
11
12
35
1.79

Tables:   1

The End!