genome.fa.s1789.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399042.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2318.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13865

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2053	170	12.1	168	80	5	1837	37	13	13	35	1.85
1--4711	341	13.9	338	73	6	2828	36	12	13	34	1.83
2487--2765	147	1.9	148	87	3	411	39	12	13	34	1.82
2635--4711	170	12.2	169	77	6	1607	37	13	13	35	1.83
4713--5415	170	4.1	170	78	6	613	36	12	13	36	1.82
5297--5557	137	1.9	136	83	3	337	36	13	10	39	1.79
5433--5803	171	2.2	170	81	3	449	33	13	14	38	1.85
5908--8474	171	15.0	171	79	3	2356	37	13	13	35	1.84
5908--8474	341	7.5	341	78	5	2238	37	13	13	35	1.84
8722--9093	170	2.2	171	83	3	473	40	12	11	36	1.78
9194--11360	171	12.7	171	78	4	1915	37	13	13	35	1.85
9194--11360	340	6.4	340	77	6	1655	37	13	13	35	1.85
9197--11360	680	3.2	668	77	7	1987	37	13	14	35	1.85
9194--11353	511	4.2	508	78	6	1940	37	13	13	34	1.85
11967--12341	171	2.2	172	80	4	409	37	14	13	34	1.85

Tables:   1

The End!