Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397432.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1963.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18654
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.28
Warning! 4331 characters in sequence are not A, C, G, or T
Found at i:302 original size:171 final size:171
Alignment explanation
Indices: 1--1194 Score: 1032
Period size: 172 Copynumber: 7.0 Consensus size: 171
* * * *
1 AATGAATCCCTTTTTCTTCATGTTTCTCAATGTAGATATTCAATTATACTATGTTTTAA-TCAAA
1 AATGAAT-GCTTTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGT-AAA
* * * * *
65 AAAGT-AAAACAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATA
64 AATGTAAAAAC-AATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
*** * *
129 AGGCTTTTAAAGGAATGAAAGACTATAAATGGAGTTTTCTTGCC
128 AGGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTACC
* * * *
173 AATGAATGCTTTTTATTCATGTTCCTCAAGGTAGATAATT-AGTTATAGTATGTTTTAAGTAAAA
1 AATGAATGCTTTTTCTTCATGTTTCTCAAGGTAGAT-ATTCAATTATAGTCTGTTTTAAGTAAAA
* *
237 ATGTAAAAACAATTCAAGTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAG
65 ATGTAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
** *
302 GCTTTTGAAAAAAAT-GGTGACTATAAATGGACTTTTCTTGCC
130 GCTTTT-AAAGGAATGGGTGACTATAAATGGACTTTTCTTACC
* * ** * * * * *
344 AATGAATTCTTTTTTCATCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGA-TCAAA
1 AATGAATGC-TTTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGT-AAA
* * * * ***
408 AATGTTAAAAA-AATTAAATTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAATAAGTAATA
64 AATG-TAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATA
* * * * *
472 AGGCTCTTGAAGAAATGGGTGACTAT-AGTGGACTTTTCTTACT
128 AGGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTACC
* * * * *
515 AATGATTGCATTTTTCTTCATGTATCTCGAGGTAGATATTCAATTATTGTCTGTTTTAACTAAAA
1 AATGAATGC-TTTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAA
* * * * ** *
580 AT-TTAAAACAATTCAACTGAAAATCATTTATGGGATTATAAAATAATTTAAAGCAAGTAATAAG
65 ATGTAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* * * * * * * *
644 ACATTTGAAGGACTGGGTGACTATAAATAGACTTTTTTTTCTT
130 GCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTAC-C
* * ** * * * * *
687 AATGAATGGTATTTTCTTCAGGTTTCAAAAGGTAGCTATTCAATTATAGTTTATTTGAAGGAAAA
1 AATGAATGCT-TTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAA
* ** * * * *
752 ATGTAAAAA-AATTTAACAAAAAATCAATCATGAGATTATAAAACCTTTTACAGCGAGTAATAAA
65 ATGTAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAG
* *** * *
816 GCTTTTGAAA-GAATGAGTGACTATAAACAAACATTTTTTTATC
130 GCTTTT-AAAGGAATGGGTGACTATAAATGGAC-TTTTCTTACC
* * * * *
859 AATGAATGACTTTTTCTTCATGTTTCTCAAAG-AGGACATTCAATTATAGTCTATTTTTAGGAAA
1 AATGAATG-CTTTTTCTTCATGTTTCTCAAGGTA-GATATTCAATTATAGTCTGTTTTAAGTAAA
* * * **
923 AATGTAAAAAC-ATTCAACTTAAAATCAATTATGAGATTATAATACTATTTAAAGTGAAAAATAA
64 AATGTAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAA
* * * *
987 AGCTTTTGAAGGAGTGGCTGACTATAAATGGACTTTTCTTACC
129 GGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTACC
** * * * * * *
1030 AATGAATGCCTTTTTCTTCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGACTAAAA
1 AATGAATG-CTTTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAA
* * * * * ** *
1095 ATGTTAAAAAAAACTGAACTTAAAATCAATTTTGAGAGTATAAAGTCATTTAAA-CTGAGTGATA
65 ATG-TAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-GAGTAATA
* * * *
1159 AGACTTTTGAAA-AAATAGGTTACTAT-AATGGACTTT
128 AGGCTTTT-AAAGGAATGGGTGACTATAAATGGACTTT
1195 NNNNNNNNNN
Statistics
Matches: 818, Mismatches: 178, Indels: 52
0.78 0.17 0.05
Matches are distributed among these distances:
169 5 0.01
170 63 0.08
171 290 0.35
172 383 0.47
173 75 0.09
174 2 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (171 bp):
AATGAATGCTTTTTCTTCATGTTTCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAAA
TGTAAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG
CTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTACC
Found at i:693 original size:343 final size:340
Alignment explanation
Indices: 1--1194 Score: 1137
Period size: 343 Copynumber: 3.5 Consensus size: 340
* * ** * * * * *
1 AATGAATCCCTTTTTCTTCATGTTTCTCAATG-TAGATATTCAATTATACTATGTTTTAATCAAA
1 AATGAATGCTTTTTTCTTCATGTTTCTTGA-GATACACATTCAATTATAATCTGTTTTGATCAAA
*
65 AAAGTAAAACAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATAA
65 AATGTAAAA-AAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATAA
* * ** * * * *
130 GGCTTTTAAAGGAATGAAAGACTATAAATGGAGTTTTCTTGCCAATGAATGC-TTTTTATTCATG
129 GGCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTTACTAATGAATGCATTTTTCTTCATG
* * * *
194 TTCCTCAAGGTAGATAATT-AGTTATAGTATGTTTTAAGTAAAAATGTAAAAACAATTCAAGTTA
194 TT-CTCAAGGTAGAT-ATTCAATTATAGTCTGTTTTAAGTAAAAAT-TTAAAACAATTCAACTTA
* * * **
258 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGAAATAAGGCTTTTGAAAAAAAT-GGTGA
256 AAATCAATTATGAGATTATAAAA-TATTTAAAGCAAGAAATAAGACTTTTG-AAGGAATGGGTGA
*
322 CTATAAATGGACTTTTCTTGCC
319 CTATAAATGGACTTTTCTTACC
* *
344 AATGAATTCTTTTTTCATCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGATCAAAA
1 AATGAATGCTTTTTTCTTCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGATCAAAA
* * * * * *
409 ATGTTAAAAAAATTAAATTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAATAAGTAATAAG
66 ATG-TAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATAAG
* * * *
474 GCTCTTGAAGAAATGGGTGACTAT-AGTGGACTTTTCTTACTAATGATTGCATTTTTCTTCATGT
130 GCTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTTACTAATGAATGCATTTTTCTTCATGT
* * * *
538 ATCTCGAGGTAGATATTCAATTATTGTCTGTTTTAACTAAAAATTTAAAACAATTCAACTGAAAA
195 -TCTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAAATTTAAAACAATTCAACTTAAAA
* * * * *
603 TCATTTATGGGATTATAAAATAATTTAAAGCAAGTAATAAGACATTTGAAGGACTGGGTGACTAT
259 TCAATTATGAGATTATAAAAT-ATTTAAAGCAAGAAATAAGACTTTTGAAGGAATGGGTGACTAT
* * * *
668 AAATAGACTTTTTTTTCTT
323 AAATGGACTTTTCTTAC-C
* * * *** * * * **
687 AATGAATGGTATTTTCTTCAGGTTTCAAAAGGTAGC-TATTCAATTATAGT-T-TATTTGAAGGA
1 AATGAATGCTTTTTTCTTCATGTTTCTTGAGATA-CACATTCAATTATAATCTGT-TTTG-ATCA
* ** ** * * * *
749 AAAATGTAAAAAAATTTAACAAAAAATCAATCATGAGATTATAAAACCTTTTACAGCGAGTAATA
63 AAAATGTAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATA
* *** *
814 AAGCTTTTGAA-AGAATGAGTGACTATAAACAAACATTTTTTTA-TCAATGAATG-ACTTTTTCT
128 AGGCTTTTGAAGA-AATGAGTGACTATAAATGGAC-TTTTCTTACT-AATGAATGCA-TTTTTCT
* * * * * *
876 TCATGTTTCTCAAAG-AGGACATTCAATTATAGTCTATTTTTAGGAAAAATGTAAAA-ACATTCA
189 TCATG-TTCTCAAGGTA-GATATTCAATTATAGTCTGTTTTAAGTAAAAATTTAAAACA-ATTCA
* * *
939 ACTTAAAATCAATTATGAGATTATAATACTATTTAAAGTGAA-AAATAA-AGCTTTTGAAGGAGT
251 ACTTAAAATCAATTATGAGATTATAA-AATATTTAAAG-CAAGAAATAAGA-CTTTTGAAGGAAT
*
1002 GGCTGACTATAAATGGACTTTTCTTACC
313 GGGTGACTATAAATGGACTTTTCTTACC
*
1030 AATGAATGCCTTTTTCTTCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGA-CTAAA
1 AATGAATGCTTTTTTCTTCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGATC-AAA
* ** * *
1094 AATGTTAAAAAAAACTGAACTTAAAATCAATTTTGAGAGTATAAAGTCATTTAAACTGAGTGATA
65 AATG-T-AAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATA
* * *
1159 AGACTTTTGAAAAAAT-AGGTTACTAT-AATGGACTTT
128 AGGCTTTTGAAGAAATGA-GTGACTATAAATGGACTTT
1195 NNNNNNNNNN
Statistics
Matches: 683, Mismatches: 138, Indels: 60
0.78 0.16 0.07
Matches are distributed among these distances:
341 6 0.01
342 180 0.26
343 270 0.40
344 157 0.23
345 69 0.10
346 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (340 bp):
AATGAATGCTTTTTTCTTCATGTTTCTTGAGATACACATTCAATTATAATCTGTTTTGATCAAAA
ATGTAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTGAGTAATAAGG
CTTTTGAAGAAATGAGTGACTATAAATGGACTTTTCTTACTAATGAATGCATTTTTCTTCATGTT
CTCAAGGTAGATATTCAATTATAGTCTGTTTTAAGTAAAAATTTAAAACAATTCAACTTAAAATC
AATTATGAGATTATAAAATATTTAAAGCAAGAAATAAGACTTTTGAAGGAATGGGTGACTATAAA
TGGACTTTTCTTACC
Found at i:4117 original size:171 final size:171
Alignment explanation
Indices: 3339--5392 Score: 1701
Period size: 171 Copynumber: 12.0 Consensus size: 171
3329 NNNNNNNNNN
* * * * *
3339 TGAATGTCTGCC-TCGAGAAACATGTAGAAAAAGTCATTCATTGAG-AAAAAAAGTCTATTTATA
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAAG-CATTCATTG-GCAAGAAAAGTCCATTTATA
* * **********
3402 GTCACCCA-TTCTTTCGAAAGCTTTATTACTCGCTTTAAATNNNNNNNNNNTCTCATAATTGATT
64 GTCACCCATTTC-TTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATT
* ** *
3466 TTATA-TTGAATTGTTTTACATTTTTGATCGAAATCA-ACTATAAA
128 TTA-AGTTGAATTTTTTTACATTTTTGATTAAAAT-AGACTATAAT
* ** * * *
3510 TGAATGTCTA-CTTCCAGAAACGTGAAAAAAAAGCATTCATTGGTAAGAAAAGTCCATTTATAGT
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGT
* * * **
3574 CACCTATTT-TATCAAAAGCCTTATTACTCACTTTAAATGGTTTTATTGTCTCATAATTGATTTT
66 CACCCATTTCT-TCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTT
* *
3638 AAGTTGAATTGTTTTTTTCATTTTTCATTAAAATAGACTATAAT
130 AAGTTGAA-T-TTTTTTACATTTTTGATTAAAATAGACTATAAT
* * * * * * *
3682 TGAAT-TCCTACCTTAGA-AAACGTGAAGAAAAAAGTATTTATCGACAAGAAAAGTCCATTTGTA
1 TGAATGT-CTACCATAGAGAAACATGAAG-AAAAAGCATTCATTGGCAAGAAAAGTCCATTTATA
*** * * * ** *
3745 GTCTTTCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATGCTCTCAAAATTGATTT
64 GTCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTT
* * * * *
3810 TAAGTTTAATTTTTTTAACTTTTTTGGTCAAAATAGATTATAAT
129 TAAGTTGAATTTTTTT-ACATTTTTGATTAAAATAGACTATAAT
* * * * * * * * *
3854 TGAATGTTTA-TATTGAGAAACAGGAGGAAAAAGGGATTAATTGGCAAGAAAAGTCGATTTATTG
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAG
* * *
3918 TCACTCA-TTCTTTCAAAAGCCGTATTACTCGCTTTAAAAAGTTTTATAATCTCATAATTGATTT
65 TCACCCATTTC-TTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTT
* * *
3982 TATGTTGAATATTTTTACATTTTTCATTAAAATAGACTATAAT
129 TAAGTTGAATTTTTTTACATTTTTGATTAAAATAGACTATAAT
* * * *
4025 TGAATG-CTAGCCATAG-GAAGCAT-ATAGAAAAAGCCATTCATTAAG-AAGAAAATTTCATTTA
1 TGAATGTCTA-CCATAGAGAAACATGA-AGAAAAAG-CATTCATT-GGCAAGAAAAGTCCATTTA
* *
4086 TAGTCACCCATTTCTTCAAATGCCTTATTACTCGCTTTAAAT-GATTTTATAATCTCATAATTAA
62 TAGTCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAG-TTTTATAATCTCATAATTGA
* * *
4150 TTTTAAGTTGAATTGTTTTACATTTTT-AGTT-AAACAGACAATAAT
126 TTTTAAGTTGAATTTTTTTACATTTTTGA-TTAAAATAGACTATAAT
* * * * * * *
4195 TAAATGTTTACC-TTGAGAAACGTGAAGAAAAATGCATTTATTGGCAAGACAAG-CTGA-TTATA
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAA-GCATTCATTGGCAAGAAAAGTC-CATTTATA
* * * * ** * * *
4257 GTAACCTATTTTTTTAAAAGCCTTATTACTCAATTTAAATGGCTTTATACTCTCA-AATTGATTT
64 GTCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTT
* * * * *
4321 TAAGTTCAATTTTTTTAACATTTTTGGTCAAAACAGATTATAAT
129 TAAGTTGAATTTTTTT-ACATTTTTGATTAAAATAGACTATAAT
* ** * **
4365 TGAATGTGTA-TGTCA-AGAAACATGAAGAAAAACGTATTCATTGATAAGAAAAGTCCA-TTATA
1 TGAATGTCTACCAT-AGAGAAACATGAAGAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATA
* ** * *
4427 GTCACCAATTTCTTCAAAAGCCTTATTACTCTTTTTAAATAGCTTTATAATCTCAAAATTGATTT
64 GTCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTT
* * *
4492 TAAGTTTAATTTTTTTGACATTTTT-AGTCAAAATAGATTATAAT
129 TAAGTTGAATTTTTTT-ACATTTTTGA-TTAAAATAGACTATAAT
* * * * *
4536 TGAATGTGTATC-TCA-AGAAACATGATGAAAAAGGAATTCATTGGTC-AGAAAAGTCCATTTCT
1 TGAATGTCTACCAT-AGAGAAACATGAAGAAAAA-GCATTCATTGG-CAAGAAAAGTCCATTTAT
* * * * *
4598 AGTCA-CCACTTTTTTCAAAAACCTTATAATTCGTTTTAAATAGTTTTATAATCTCATAATTGAT
63 AGTCACCCA-TTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGAT
* * *
4662 TTTAAGTTAAATTTTTTTTTATATTTTT-AGTTAAAACAGACTATAAT
127 TTTAAGTTGAA--TTTTTTTACATTTTTGA-TTAAAATAGACTATAAT
* * * * * * * *
4709 T-AATTGCCTACC-TTGAGAAACGTGAAGAAAAAGTATTCATTGACAAGAAAAATCCATTTACAA
1 TGAA-TGTCTACCATAGAGAAACATGAAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAG
** * * * * *
4772 TTTCACATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTAT--TCTTCCAAAATTGATT
65 TCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATC-T-CATAATTGATT
* * * * *
4835 TTAAGTTCAATTTTTTTTTTACTTTTTTGGTTAAAACAGATTATAAT
128 TTAAGTTGAA---TTTTTTTACATTTTTGATTAAAATAGACTATAAT
* * * * ** * * *
4882 TAAATGTTTA-GATCGAGAAACATGAAGAAAAAGGGGTTCATTGGCAAGAAAAGTCGATATATTG
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAG
* * * *
4946 TCACCCATTCCTTCAAAAGCCTTATTACTCGCTTTAAATAATTTTATAATCTAATAATTAATTTT
65 TCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTT
* * *
5011 AAGTTGAATTCTTTTACATTTTTTATTAAAACAGACTATAAT
130 AAGTTGAATTTTTTTACATTTTTGATTAAAATAGACTATAAT
* * * * * *
5053 TGAATG-CATGCC-TTGAGAAATATGTAGAAAAAGCTATTCATTAAG-AAGAAAAGTCTATTTAT
1 TGAATGTC-TACCATAGAGAAACATGAAGAAAAAGC-ATTCATT-GGCAAGAAAAGTCCATTTAT
* * *
5115 AGTCACCCATTCCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATT
63 AGTCACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATT
* * ** *
5180 TTATGTTGAATTTTTTTACATTTTTGGTCGAAATCA-ACTATAAA
128 TTAAGTTGAATTTTTTTACATTTTTGATTAAAAT-AGACTATAAT
* ** * *
5224 TGAATGTCTATC-TCCAGAAACATGAA-AAAAGGCATTCATTGGTAAGAAAAGTCCATTTATAGT
1 TGAATGTCTACCATAGAGAAACATGAAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGT
* ** * *
5287 CACCCA-TTCTATCAAAAGCCTTATTACTTGCTTTAAATAGTTTTATTGTCTTATAATTAATTTT
66 CACCCATTTCT-TCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTT
* *
5351 AAGTTCAATTTTTTTACATTTTTCATTAAAATAGACTATAAT
130 AAGTTGAATTTTTTTACATTTTTGATTAAAATAGACTATAAT
5393 NNNNNNNNNN
Statistics
Matches: 1530, Mismatches: 285, Indels: 138
0.78 0.15 0.07
Matches are distributed among these distances:
168 27 0.02
169 175 0.11
170 245 0.16
171 473 0.31
172 319 0.21
173 198 0.13
174 90 0.06
175 1 0.00
176 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (171 bp):
TGAATGTCTACCATAGAGAAACATGAAGAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGT
CACCCATTTCTTCAAAAGCCTTATTACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTA
AGTTGAATTTTTTTACATTTTTGATTAAAATAGACTATAAT
Found at i:5686 original size:21 final size:21
Alignment explanation
Indices: 5660--5699 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
5650 GAGAAATGTG
*
5660 AAGAAAAATGGATTTATTGGT
1 AAGAAAAATCGATTTATTGGT
*
5681 AAGAAAAGTCGATTTATTG
1 AAGAAAAATCGATTTATTG
5700 TCACCCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.23, T:0.33
Consensus pattern (21 bp):
AAGAAAAATCGATTTATTGGT
Found at i:6884 original size:171 final size:171
Alignment explanation
Indices: 6438--11576 Score: 3216
Period size: 171 Copynumber: 30.2 Consensus size: 171
6428 NNNNNNTTTG
* * * * ** **
6438 ACCAAAAATGTCAAAACAATTGAACTTAAAATCAATTTTGAGATTATAAAGTCATTTAAAATGAG
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * *
6503 TAATAAGGATTTTGAAA-AAGGTGGTGACTACAAATGGACTTTTTTTTGCCAATGAATGCCTTTC
65 TAATAAGGCTTTTGAAAGAATG-GGTGACTATAAATGGAC-TTTTCTTGCCAATGAATGCCTTT-
* * ** * * * *
6567 TT-ATCACGTTTCTTGAGATACACATTCAATTATAATCTGTTTTG
127 TTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * * *********
6611 ACCAAAATTGTTAAAACAATTGAATTTAAAATCAATTTTGAGATTATAAAGCCATTNNNNNNNNN
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * *
6676 NAATAAAGCTTTTG-AAGAAATGGGTGACTAT-AATGGACTTTTCTTACCAATGACTGCATTTTT
65 TAATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
*
6739 CTTCATGTTTCTCAAGGTAGACATTCAATTATTGTCTGTTTTA
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * *
6782 ACCAAAAATTTAAAATAATTCAACTTAAAATCAATTATGGGATTATAAAACCACTTAAAGCGAGT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * *
6847 AATAAGGCATTTGAAAGAATGGGTTACTATAAATGGACTTTTCTT-CTTAATGAATTG-ATTTTT
66 AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAA-TGCCTTTTT
* *
6910 CTTCATGTTTCCCAAGGTAGACATTCAATTATAGTCT-ATTT-
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * *
6951 ------AATGTAAAAAAATTCAACATAAAATCAATCATGAGATTATAAAATCATTTACAGCGAGT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* ** * *
7010 AATAAGGCTTTTGAAGGAATGGGTGACTATAAACAGACTTTTTTTTGTCAATGAATGCCTTTTTC
66 AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGAC-TTTTCTTGCCAATGAATGCCTTTTTC
* ** * *
7075 TGCACATTTCTCAAGGTAGACATTCCATTAGAGTCTGTTTTA
130 TTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
** *
7117 A-GGAAAATTATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAACAA-TATTTAAAGCGA
1 ACCAAAAATT-TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA-AACCATTTAAAGCGA
* * * * *
7180 ATAATAAGGC-TTTGAAGGAGTAGGTGACTATAAATGGACTTTTCTTACCAATGAATGCCTTTTT
64 GTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
** * * * *
7244 CTTCATGTTTCTTGAGATACACATTCAATTATAATCTG-TTTG
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * *
7286 ATCAAAAATGTTAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAGCCATTTAAA-CTGA
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-GA
* * * * * *
7350 GTAATAAGGCTTTTGAAAAAATGGATTACTAT-AATGGACTTTTCTTCCCTATGAATGCATTTTT
64 GTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
* * * * *
7414 CTTAATGCTTCTCAAAGTAAACATTCAATTATTGTCTGTTTTA
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * ** * *
7457 ACTAAAAATGTAAAAGAATTCGGCGTACAATCAATTATGAGATTATAAAACCATTTATAA-CGAG
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAG
* * * * * * **
7521 TAATATGCCTTTTGAAAGAATGAGTGACCATAAAT-TAGCTTTTCTT-CTCAATGTATGGATTTT
65 TAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGA-CTTTTCTTGC-CAATGAATGCCTTTT
* * * * * *
7584 TCTACATATTTCCCAAAGCA-AGCATTCAATTATAGTCTATTTTA
128 TCTTCATGTTTCTCAAGGTAGA-CATTCAATTATAGTCTGTTTTA
** * * ** *
7628 ATAAAAAATATAAAAAAATTCAACATAAAATCAATTATGAGATTATAAAACTTTTTAAAGCGTGT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * * * *
7693 AATATGGCTTTTGGAGGAATGAGTGACAATAAATAGACTTTTCTTACCAATGAATCCCTTTTTCT
66 AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCT
** * * * * * * * *
7758 TCACATTTTTTAATGTAAACATTCAACTATAATATCTTTTA
131 TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
** * * * *
7799 ACCAAAAAAGTAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAACTATTTAAAGTC-AG
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CGAG
* * * * * *
7863 TAATAAGGCTTTTGAAGGAATGAGAGACTAAAAATAGACTTTTCTTACCAATGAAT-CCTTTTTC
65 TAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC
* * * *
7927 TTTATGTTCCTTAAGATAGACAATT-AATTATAGTCTGTTTTA
130 TTCATGTTTCTCAAGGTAGAC-ATTCAATTATAGTCTGTTTTA
* ** *
7969 ACAAAAAAAGTAAAAAAAAATTCAAGTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
1 AC-CAAAAA-TTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
** * * *
8034 GTAATAAGGCTTCAGGAAA-AA-CGGTGACTATAAATAGA-TGTTTCTTGTCAATGAATGCCTTT
64 GTAATAAGGCTT-TTGAAAGAATGGGTGACTATAAATGGACT-TTTCTTGCCAATGAATGCCTTT
* * * * * * *
8096 TTCATCAAGTTTCTTCATA--TACACAATCAATTATAATCTATTTTG
127 TTCTTCATGTTTC-TCA-AGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * *
8141 ACAAAAAATGTCAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAGTGAG
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* ** *
8206 TAATAAGGCTTTT-AAAGAAATGGGTGACTAT-AATGGACTTTTCTTACCAATGAACACATTTTT
65 TAATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
** ** * *
8269 CTTCACATTTCTTGAGGTAGACATTTAATTATTGTCTGTTTTA
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * * * *
8312 ACTAAAAATGTAAAAAAAATTTAGCTTAAAATCAATTATGGGATTATAAAACTATTTATAGCAAG
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * * * * *
8377 TAATAAGCCTTTTGAAGGAATGAGTGACCATAAAT-TAGCTTTTCTT-CTGAATGTATAG-ATTT
65 TAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGA-CTTTTCTTGC-CAATGAAT-GCCTTT
* * * * *
8439 TTCTACATGTTTCCCAAGGCAGGCATTCAATTATAGTCTATTTTA
127 TTCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * *******
8484 A-CAAAAACTGTAAAAAAATTCAACATAAAATCAATTATGAGATTATAAAA-CTTTTNNNNNNNN
1 ACCAAAAA-TTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTT-AAAGCGA
** * * * **
8547 NNAATAAGGCTTTTGAAAGAATGAGTGACAATAAATAGACTTTTCTTATCAATGAAT-CTCTTTT
64 GTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGC-CTTTT
* * * * * * *
8611 TCTTCACGTTTCTTAATGTAGACATTCAACTATAATATCTTTTA
128 TCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
*** * *
8655 ACCAAAAAAGGAAAAAAAATCGAACTTAAAATCAATT-TCGAGAGTATAAAACCATTTAAAGTC-
1 ACCAAAAATTTAAAAAAATTC-AACTTAAAATCAATTAT-GAGATTATAAAACCATTTAAAG-CG
* *********** *
8718 AGTAATAAGGCTTTTGAAGGAATGANNNNNNNNNNATAGACTTTTCTTGCCAATGAATG-CTTTT
63 AGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTT
* *
8782 TCTTCATGTTCCTCAATGTAGACAATT-AATTATAGTCTGTTTTA
128 TCTTCATGTTTCTCAAGGTAGAC-ATTCAATTATAGTCTGTTTTA
* * * *
8826 ACAAAAAATGTCAAAACAAATT-AAGTTAAAATCAATTATGAAATTATAAAACCATTTAAAGCGA
1 ACCAAAAAT-TTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* * * * *
8890 GTAATAAGGCTTCTGAAAAAAAT-AGTGACTATAAAAGGACGTTTCTTGCCAATGAATGCCTTTT
64 GTAATAAGGCTTTTG-AAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTT
* * * * *
8954 TCATCATGTTTCTTC-AGATACACATTCAATTATAATCT-TATTTG
128 TCTTCATGTTTC-TCAAGGTAGACATTCAATTATAGTCTGT-TTTA
* * * * * * * **
8998 ACAAAAAATGTCAAACAAATTGAGCTTAAAATCAATTTTGAGATTATAAAGCCATTTAAATTGAG
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
********** *
9063 TAAT-ANNNNNNNNNNAGAAATGGGTGACTAT-AATGGACTTTTTTTGCCAATGAATGCAC-TTT
65 TAATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGC-CTTTT
** *
9125 TCTTCACAT-TTTCTTGAGGTAGACATTCAATTATTGTCTGTTTTA
128 TCTT--CATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * * *
9170 GCAAAAAATATAAAATAATTCAACTTAAAATCATTTATGGGATTATAAAACCATTTAAAGCGAGC
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
** * *
9235 AATAAGGAATTTGAAAGAATGGGTGACTATAAATGGACTTTTCTT-CTTAATAAATAG-CTTTTT
66 AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAAT-GCCTTTTT
* *** *
9298 -TTCATGTTTCTTAAAACA-AGCATTCAATTATAGTCTATTTTA
129 CTTCATGTTTCTCAAGGTAGA-CATTCAATTATAGTCTGTTTTA
** * * * * * * * *
9340 ATTAAAAATATAAAAACATTTAACATAAAATCAATCATGAGAATATAAAACTATTTACAGCGAGT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
********** **
9405 AATAAGGCTTTTNNNNNNNNNNGTGACTATAAACAGACTTTTCTTTGTCC-ATGAATGCCTTTTT
66 AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTC-TTG-CCAATGAATGCCTTTTT
* **********
9469 CTTCACGTTTNNNNNNNNNNACATTCAATTATAGTCTGTTTTA
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
** * * * * ** *
9512 AGGAAAAATGTAAATAAATTCAACTTAAAATCCATTATGAGATTATAACAGTATTTAAAGCGAAT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *****
9577 AATAAGGCTGTTGAAA-AAAGTGATGATTATAAATGGACTTTTCAAATAAATGAATGCCTTTTTC
66 AATAAGGCTTTTGAAAGAATG-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC
** * * * * *
9641 TTCATGTTTCTTGAGATATACATTCAATTATAATATGTTTTG
130 TTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* ********** *
9683 ACCAAAAATGTTAAAAAAAATTAAACTTAAAATCAATTNNNNNNNNNNAAAGCCATTTAAA-CTG
1 ACCAAAAAT-TT-AAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGC-G
* * * * * *
9747 AGTAATAAGACTTTTGAAAAAATGGGTTACTAT-AATGGATTTTTCTTGCCAATGAATACATTTT
63 AGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTT
* *
9811 TCTTCATGTTTCGT-AAGGTAGACATTCAATTATTGTCTGCTTTA
128 TCTTCATGTTTC-TCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * * * *
9855 A-CAAAAATGTAAAACAATTCAATTTAAAATCAATTATGGGATTATAAAACTATTTATAGCGACT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * * **
9919 AATAAGCCTTTTG-AAGAAATGAGTGACTATAAAT-TAGCTTTT-TTTCTCAATGTATGGATTTT
66 AATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGA-CTTTTCTTGC-CAATGAATGCCTTTT
* * * * * *
9981 TCTACACGTTTCTTAAGGAAAACATTCAATTATAGTCTATTTTA
128 TCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
** ** * * ***
10025 ATAAAAAATGAAAAAAAATTTAA-TATAAAACCAATTATGAGATTATAAAATTTTTTAAAGCGAG
1 ACCAAAAATTTAAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * * ********** *
10089 TAATAAGACTTTTGAAGGAATGGGTGACAATAAATAGACTTNNNNNNNNNNTGAATCCCTTTTTC
65 TAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC
* * * *
10154 TTCATGTTTTTCAAAGTCA-ACATTCAATTATAATATGTTTTA
130 TTCATGTTTCTCAAGGT-AGACATTCAATTATAGTCTGTTTTA
* * * * * *
10196 ACCAAAAAAGTAAAAAAAATTGAATTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTC-A
1 ACC-AAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CGA
*************** **
10260 GTAATAAGGCTTTTGNNNNNNNNNNNNNNNATAAATAAACTTTTCTTGCCAATGAATG-CTTTTT
64 GTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
* *
10324 CTTCAGGTTCCTTCAA-GTAGACAATT-AATTATAGTCTGTTTTA
129 CTTCATGTTTC-TCAAGGTAGAC-ATTCAATTATAGTCTGTTTTA
* * * * * *
10367 ACAAAAAAATGTAAAACAAATTCAAGTCAAAATCAATTATGAGATTATGAAATCATTTAAAGCGA
1 AC-CAAAAATTTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
* ** **********
10432 GTAATAAGGCTTTTGAAAAAAACGGTGACTATAAATGGACTTTTCTTGCCAANNNNNNNNNNTTT
64 GTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTT
* ** * * * * * * *
10497 CATCATGTTTCTTGAGATACACATTAAATTATAATATTATTTTTG
129 CTTCATGTTTCTCAAGGTAGACATTCAATTATAGT-CT-GTTTTA
* * * * * *
10542 A-CAAAAATGT--GAAAATTGAACTTAAAATC-ATT-TGA-TTTAT-AAACCATTTAAAGTGACT
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
*
10600 AAT-AGGCTTTT--AAGAAATGGGTGACTAT-AATGGACTTTT-TTGCC-ATGAATGCATTTTTC
66 AATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC
** * * * *
10659 TTCACATTTCTCAACGTAGACCTTCAATTATTGTGTGTTTTA
130 TTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* * * * *
10701 ACTAAAAATATAAAACAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAGAGCGAGC
1 ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
* * * * *
10766 AATAAGG-TATTTGAAGGAAT-GG-G----TAAATGGACTTTTCTT-CTTAATGAAAGGCTTTTC
66 AATAAGGCT-TTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGC-CAATGAATGCCTTTTT
* * * * *
10823 CTACACGTTTC-CTAAGGCAAACATTCAATTATAGTCTATTTTA
129 CTTCATGTTTCTC-AAGGTAGACATTCAATTATAGTCTGTTTTA
** * * * **
10866 ATGAAAAATATAAAAAAATTCAA-TATAAAATCAATTATGAGATTGTGAAACTTTTTAAAGCGAG
1 ACCAAAAATTTAAAAAAATTCAACT-TAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * * ** * * **
10930 TAATAAAGCTTTTGAAGGAATGGGTAAGAATAAATAGACTTTTCTTACCAATGAACCCCTTTTTC
65 TAATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTC
* * **********
10995 TTAATGTTTCTCAATGTAGACATTCAATTATAANNNNNNNNN
130 TTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
* ** * * * * * ** *
11037 NCCAAAAAAGTAAAACAAATTGAACTTAATATCAATTTTGAGAGTATAAAATCATTTAAAATGAC
1 ACCAAAAATTTAAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
* * *
11102 TAATAAGGCTTTT-AAAGGAATGAGG-GACTATAAATAGACTTCTCTT-CTCAATGAAT-ACTTT
65 TAATAAGGCTTTTGAAA-GAATG-GGTGACTATAAATGGACTTTTCTTGC-CAATGAATGCCTTT
* *
11163 TTCTTCATGTTTCTCAAGGTAGACAATT-AATCATAGTCTATTTTA
127 TTCTTCATGTTTCTCAAGGTAGAC-ATTCAATTATAGTCTGTTTTA
* * **********
11208 ACCAAAAATATAAAAAAAATTCAAGTTAAAATNNNNNNNNNNATTATAAAACCATTTAAAGCGAG
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAG
*
11273 TAATAAGGCTTTTG-AA-AATAGTGGTGACTATAAATAGACTTTTCTTGCCAATGAATGCCTTTT
65 TAATAAGGCTTTTGAAAGAAT-G-GGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTT
********** ** * * * * *
11336 NNNNNNNNNNTCTTGAGATACACATTCAATTATAATATGTTTTG
128 TCTTCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
** * * * ********* *
11380 ACCAAAAATGCCAAAAAAATTGAATTTAAAATCAATTTTGAGATTATAANNNNNNNNNNAA-TGA
1 ACCAAAAAT-TTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAA-AACCATTTAAAGCGA
* * **
11444 GTAATAAGGCTTTTG-AAGAAATGGGTGACTAT-AATGGAATTTTTTTGCCAATGAATGTATTTT
64 GTAATAAGGCTTTTGAAAG-AATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTT
** * **
11507 TCTTCACATTTTTTGAGGTAGACATTCAATTATTA-TCTGTTTTA
128 TCTTCATGTTTCTCAAGGTAGACATTCAATTA-TAGTCTGTTTTA
* *
11551 ACCAAAAATATAAAACAATTCAACTT
1 ACCAAAAATTTAAAAAAATTCAACTT
11577 NNNNNNNNNN
Statistics
Matches: 3794, Mismatches: 995, Indels: 357
0.74 0.19 0.07
Matches are distributed among these distances:
159 5 0.00
160 8 0.00
161 27 0.01
162 22 0.01
163 114 0.03
164 66 0.02
165 128 0.03
166 40 0.01
167 12 0.00
168 8 0.00
169 85 0.02
170 545 0.14
171 1542 0.41
172 987 0.26
173 189 0.05
174 11 0.00
175 5 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
ACCAAAAATTTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
AATAAGGCTTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGCCTTTTTCT
TCATGTTTCTCAAGGTAGACATTCAATTATAGTCTGTTTTA
Found at i:7406 original size:21 final size:20
Alignment explanation
Indices: 7378--7416 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7368 AAATGGATTA
*
7378 CTATAATGGACTTTTCTTCC
1 CTATAATGCACTTTTCTTCC
*
7398 CTATGAATGCATTTTTCTT
1 CTAT-AATGCACTTTTCTT
7417 AATGCTTCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (20 bp):
CTATAATGCACTTTTCTTCC
Found at i:10227 original size:685 final size:682
Alignment explanation
Indices: 6734--10271 Score: 1819
Period size: 685 Copynumber: 5.2 Consensus size: 682
6724 AATGACTGCA
* * * * * *
6734 TTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATTGTCTGTTTTAACCAAAAATTTAAAATA
1 TTTTTCTTCATGTTTCTCAAAGTA-ACATTCAATTATAGTCTGTTTTAACAAAAAAGTAAAAAAA
* *
6799 ATTCAACTTAAAATCAATTATGGGATTATAAAACCACTTAAAGCGAGTAATAAGGCATT-TG-AA
65 ATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC-TTCTGAAA
* * * * * ** * * * *
6862 AGAATGGGTTACTATAAATGGACTTTTC-TTCTTAATGAATTG-ATTTTTCTTCATGTTTC-CCA
128 AAAAT-AGTGACTATAAAAGGACGTTTCAAAC-AAATGAA-TGCCTTTTTCATCATGTTTCTTC-
* * * * * *
6924 AGGTAGACATTCAATTATAGT-CTATTT-------AATGT-AAAAAAATTCAACATAAAATCAAT
189 AGATACACATTCAATTATAATATTATTTGACAAAAAATGTAAAAAAAATTAAACTTAAAATCAAT
** ** * * ** *
6980 CATGAGATTATAAAATCATTTACAGC-GAGTAATAAGGCTTTTGAAGGAATGGGTGACTATAAAC
254 TTTGAGATTATAAAGCCATTTA-AACTGAGTAATAAGACTTTTGAAAAAATGGGTGACTAT-AAT
* * * * * *
7044 AGACTTTTTTTTGTCAATGAATGC-CTTTTTCTGCACA-TTTC-TCAAGGTAGACATTCCATTAG
317 GGAC-TTTTTTTGCCAATGAATACAC-TTTTCT-TACATTTTCGT-AAGGTAGACATTCAATTAT
* * ** * * * *
7106 AGTCTGTTTTAAGGAAAATTATAAAAAAATTCAACTTAAAATCAATTATGAGATTATAACAA-TA
378 TGTCTGCTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGGGATTATAA-AACCA
** * * *
7170 TTTAAAGCGAATAATAAGGC--TTTGAAGGAGT-AGGTGACTATAAATGGACTTTTCTTAC-CAA
442 TTTAAAGCGAGCAATAA-GCAATTTGAAAGAATGA-GTGACTATAAATAGACTTTTCTT-CTCAA
* * * * * * * * *
7231 TGAAT-GCCTTTTTCTTCATGTTTCTTGAGATAC-A-CATTCAATTATAATCT-GTTTGATCAAA
504 TAAATAG-ATTTTT-TACACGTTTCTT-A-AAACAAGCATTCAATTATAGTCTATTTTAATAAAA
* * * * ** * * *
7292 AATGTTAAAAAAATTGAACTTAAAATCAATTTTGAGAGTATAAAGCCATTTAAA-CTGAGTAATA
565 AAT-ATAAAAAAATTTAACATAAAACCAATCATGAGAATATAAAACTATTTAAAGC-GAGTAATA
* ** * * * ** * * *
7356 AGGCTTTTGAAAAAATGGATTACTAT-AATGGACTTTTC-TT-CCCTATGAATGCA
628 AGACTTTTGAAGGAATGGGTGACAATAAACAGACTTTTCTTTGTCC-ATGAATCCC
* * * * *
7409 TTTTTCTTAATGCTTCTCAAAGTAAACATTCAATTATTGTCTGTTTTAACTAAAAATGT-AAAAG
1 TTTTTCTTCATGTTTCTCAAAGT-AACATTCAATTATAGTCTGTTTTAAC-AAAAAAGTAAAAAA
** * * * * *
7473 AATTCGGCGTACAATCAATTATGAGATTATAAAACCATTTATAA-CGAGTAATATGCCTTTTG-A
64 AATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTA-AAGCGAGTAATAAGGCTTCTGAA
* * * ** * * ** *
7536 AAGAATGAGTGACCATAAATTA-G-CTTTTC-TTCTCAATGTATGGATTTTTC-TACATATTTC-
127 AAAAAT-AGTGACTATAAA--AGGACGTTTCAAAC-AAATGAATGCCTTTTTCAT-CATGTTTCT
* * * * * * * *
7596 CCA-A-AGCAAGCATTCAATTATAGT-CTATTTTAATAAAAAATAT-AAAAAAATTCAACATAAA
187 TCAGATA-C-A-CATTCAATTATAATATTA-TTTGACAAAAAATGTAAAAAAAATTAAACTTAAA
* * ** * * * * ** * *
7657 ATCAATTATGAGATTATAAAACTTTTTAAAGC-GTGTAATATGGCTTTTGGAGGAATGAGTGACA
248 ATCAATTTTGAGATTATAAAGCCATTTAAA-CTGAGTAATAAGACTTTTGAAAAAATGGGTGACT
* * * * * * *
7721 ATAAATAGACTTTTCTTACCAATGAAT-CCCTTTTTCTTCACATTTT-TTAATGTAAACATTCAA
312 AT-AATGGACTTTTTTTGCCAATGAATACAC-TTTTCTT-ACATTTTCGTAAGGTAGACATTCAA
* * * * * *
7784 CTATAATATCT--TTTAACCAAAAAAGTA-AAAA-AATTGAACTTAAAATCAATTTTGAGAGTAT
374 -T-TATTGTCTGCTTTAA-CAAAAAA-TATAAAACAATTCAACTTAAAATCAATTATGGGATTAT
* * * * * *
7845 AAAACTATTTAAAGTC-AGTAATAAGGC-TTTTGAAGGAATGAGAGACTAAAAATAGACTTTTCT
435 AAAACCATTTAAAG-CGAGCAATAA-GCAATTTGAAAGAATGAGTGACTATAAATAGACTTTTCT
* ** ** * * * * *
7908 TAC-CAATGAAT-CCTTTTTCTTTATGTTCCTTAAGA-TAGACAATT-AATTATAGTCTGTTTTA
498 T-CTCAATAAATAGATTTTT-TACACGTTTCTTAAAACAAG-C-ATTCAATTATAGTCTATTTTA
* * * ** * * * *
7969 ACAAAAAAAGTAAAAAAAAATTCAAGTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGA
559 A-TAAAAAA-TATAAAAAAATTTAACATAAAACCAATCATGAGAATATAAAACTATTTAAAGCGA
* ** ** * * * *
8034 GTAATAAGGCTTCAGGAA--AAACGGTGACTATAAATAGA-TGTTTC-TTGTCAATGAATGCC
622 GTAATAAGACTT-TTGAAGGAATGGGTGACAATAAACAGACT-TTTCTTTGTCCATGAATCCC
* * * * * * * *
8093 TTTTTCATCAAGTTTCTTCATA-TACACAATCAATTATAATCTATTTTGACAAAAAATGTCAAAA
1 TTTTTCTTCATGTTTC-TCAAAGTA-ACATTCAATTATAGTCTGTTTTAACAAAAAA-GTAAAAA
* * * *
8157 AAATTGAACTTAAAATCAATTTTGAGATTATAAAGCCATTTAAAGTGAGTAATAAGGCTT-TTAA
63 AAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAA
* * * * ** * ** * * ** *
8221 AGAAATGGGTGACTAT-AATGGACTTTTCTTACCAATGAACACATTTTTCTTCACATTTCTTGAG
127 AAAAAT-AGTGACTATAAAAGGACGTTTCAAACAAATGAATGCCTTTTTCATCATGTTTCTTCAG
* * * ** * * * * *
8285 GTAGACATTTAATTATTGTCTGT-TTTAACTAAAAATGTAAAAAAAATTTAGCTTAAAATCAATT
191 ATACACATTCAATTATAATAT-TATTTGACAAAAAATGTAAAAAAAATTAAACTTAAAATCAATT
* * * * * * * ** * *
8349 ATGGGATTATAAAACTATTTATAGC-AAGTAATAAGCCTTTTGAAGGAATGAGTGACCATAAAT-
255 TTGAGATTATAAAGCCATTTA-AACTGAGTAATAAGACTTTTGAAAAAATGGGTGACTAT-AATG
* * * * ** * * *
8412 TAGCTTTTCTTCTG--AATGTATAGATTTTTC-TACATGTTTCCCAAGGCAGGCATTCAATTATA
318 GA-CTTTT-TT-TGCCAATGAATACACTTTTCTTACAT-TTTCGTAAGGTAGACATTCAATTATT
** * * * * * *
8474 GTCTATTTTAACAAAAACTGTAAAAAAATTCAACATAAAATCAATTATGAGATTATAAAA-CTTT
379 GTCTGCTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGGGATTATAAAACCATT
********* * * * *
8538 TNNNNNNNNNNAATAAGGC-TTTTGAAAGAATGAGTGACAATAAATAGACTTTTCTTATCAATGA
444 T-AAAGCGAGCAATAA-GCAATTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTCTCAATAA
*** * *** * * * * * *
8602 ATCTCTTTTTCTTCACGTTTCTT-AATGTAGACATTCAACTATAATATCTTTTAACCAAAAAAGG
507 ATAGATTTTT-TACACGTTTCTTAAAACAAG-CATTCAATTATAGTCTATTTTAA-TAAAAAA-T
** * * * * * *
8666 A-AAAAAAATCGAACTTAAAATCAAT-TTCGAGAGTATAAAACCATTTAAAGTC-AGTAATAAGG
568 ATAAAAAAATTTAACATAAAACCAATCAT-GAGAATATAAAACTATTTAAAG-CGAGTAATAAGA
*********** * *
8728 CTTTTGAAGGAATGANNNNNNNNNNATAGACTTTTC-TTG-CCAATGAAT-GC
631 CTTTTGAAGGAATGGGTGACAATAAACAGACTTTTCTTTGTCC-ATGAATCCC
* *
8778 TTTTTCTTCATGTTCCTCAATGTAGACAATT-AATTATAGTCTGTTTTAACAAAAAATGTCAAAA
1 TTTTTCTTCATGTTTCTCAAAGTA-AC-ATTCAATTATAGTCTGTTTTAACAAAAAA-GT-AAAA
* * *
8842 CAAATTAAGTTAAAATCAATTATGAAATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAA
62 AAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAA
*** *
8907 AAAAATAGTGACTATAAAAGGACGTTTCTTGCCAATGAATGCCTTTTTCATCATGTTTCTTCAGA
127 AAAAATAGTGACTATAAAAGGACGTTTCAAACAAATGAATGCCTTTTTCATCATGTTTCTTCAGA
* * * * *
8972 TACACATTCAATTATAATCTTATTTGACAAAAAATGTCAAACAAATTGAGCTTAAAATCAATTTT
192 TACACATTCAATTATAATATTATTTGACAAAAAATGTAAAAAAAATTAAACTTAAAATCAATTTT
* ********** *
9037 GAGATTATAAAGCCATTTAAATTGAGTAATANNNNNNNNNNAGAAATGGGTGACTATAATGGACT
257 GAGATTATAAAGCCATTTAAACTGAGTAATAAGACTTTTGAAAAAATGGGTGACTATAATGGACT
* * * *
9102 TTTTTTGCCAATGAATGCACTTTTCTTCACATTTTCTTGAGGTAGACATTCAATTATTGTCTGTT
322 TTTTTTGCCAATGAATACACTTTTCTT-ACATTTTCGTAAGGTAGACATTCAATTATTGTCTGCT
* * *
9167 TTAGCAAAAAATATAAAATAATTCAACTTAAAATCATTTATGGGATTATAAAACCATTTAAAGCG
386 TTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGGGATTATAAAACCATTTAAAGCG
* * * * *
9232 AGCAATAAGGAATTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTCTTAATAAATAGCTTTT
451 AGCAATAAGCAATTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTCTCAATAAATAGATTTT
* * * *
9297 TTTCATGTTTCTTAAAACAAGCATTCAATTATAGTCTATTTTAATTAAAAATATAAAAACATTTA
516 TTACACGTTTCTTAAAACAAGCATTCAATTATAGTCTATTTTAATAAAAAATATAAAAAAATTTA
* * * **********
9362 ACATAAAATCAATCATGAGAATATAAAACTATTTACAGCGAGTAATAAGGCTTTTNNNNNNNNNN
581 ACATAAAACCAATCATGAGAATATAAAACTATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGG
* *
9427 GTGACTATAAACAGACTTTTCTTTGTCCATGAATGCC
646 GTGACAATAAACAGACTTTTCTTTGTCCATGAATCCC
* ********* * * *
9464 TTTTTCTTCACGTTTNNNNNNNNNNACATTCAATTATAGTCTGTTTTAAGGAAAAATGT-AAATA
1 TTTTTCTTCATGTTT-CTCAAAGTAACATTCAATTATAGTCTGTTTTAA-CAAAAAAGTAAAAAA
* * ** *
9528 AATTCAACTTAAAATCCATTATGAGATTATAACAGTATTTAAAGCGAATAATAAGGCTGT-TGAA
64 AATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCT-TCTGAA
* * * * * * *
9592 AAAAGT-GATGATTATAAATGGACTTTTCAAATAAATGAATGCCTTTTTCTTCATGTTTCTTGAG
127 AAAAATAG-TGACTATAAAAGGACGTTTCAAACAAATGAATGCCTTTTTCATCATGTTTCTTCAG
* *
9656 ATATACATTCAATTATAATATGT-TTTGACCAAAAATGTTAAAAAAAATTAAACTTAAAATCAAT
191 ATACACATTCAATTATAATAT-TATTTGACAAAAAATG-TAAAAAAAATTAAACTTAAAATCAAT
********** *
9720 TNNNNNNNNNNAAAGCCATTTAAACTGAGTAATAAGACTTTTGAAAAAATGGGTTACTATAATGG
254 TTTGAGATTATAAAGCCATTTAAACTGAGTAATAAGACTTTTGAAAAAATGGGTGACTATAATGG
*
9785 A-TTTTTCTTGCCAATGAATACATTTTTCTT-CATGTTTCGTAAGGTAGACATTCAATTATTGTC
319 ACTTTTT-TTGCCAATGAATACACTTTTCTTACAT-TTTCGTAAGGTAGACATTCAATTATTGTC
* * * *
9848 TGCTTTAAC-AAAAATGTAAAACAATTCAATTTAAAATCAATTATGGGATTATAAAACTATTTAT
382 TGCTTTAACAAAAAATATAAAACAATTCAACTTAAAATCAATTATGGGATTATAAAACCATTTAA
** * **
9912 AGCGA-CTAATAAGCCTTTTG-AAGAAATGAGTGACTATAAATTAG-CTTTTTTTCTCAATGTAT
447 AGCGAGC-AATAAGCAATTTGAAAG-AATGAGTGACTATAAA-TAGACTTTTCTTCTCAATAAAT
*
9974 GGATTTTTCTACACGTTTCTTAAGGAA-AA-CATTCAATTATAGTCTATTTTAATAAAAAATGA-
509 AGATTTTT-TACACGTTTCTTAA--AACAAGCATTCAATTATAGTCTATTTTAATAAAAAAT-AT
* * * * *
10036 AAAAAAATTTAATATAAAACCAATTATGAGATTATAAAATTTTTTAAAGCGAGTAATAAGACTTT
570 AAAAAAATTTAACATAAAACCAATCATGAGAATATAAAACTATTTAAAGCGAGTAATAAGACTTT
* **********
10101 TGAAGGAATGGGTGACAATAAATAGAC-TTNNNNNNNNNNTGAATCCC
635 TGAAGGAATGGGTGACAATAAACAGACTTTTCTTTGTCCATGAATCCC
* * *
10148 TTTTTCTTCATGTTTTTCAAAGTCAACATTCAATTATAATATGTTTTAACCAAAAAAGTAAAAAA
1 TTTTTCTTCATGTTTCTCAAAGT-AACATTCAATTATAGTCTGTTTTAA-CAAAAAAGTAAAAAA
* * *
10213 AATTGAATTTAAAATCAATTTTGAGAGTATAAAACCATTTAAAGTC-AGTAATAAGGCTT
64 AATT-AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGCTT
10272 TTGNNNNNNN
Statistics
Matches: 2244, Mismatches: 495, Indels: 239
0.75 0.17 0.08
Matches are distributed among these distances:
672 1 0.00
674 7 0.00
675 162 0.07
676 12 0.01
680 3 0.00
681 4 0.00
682 119 0.05
683 179 0.08
684 440 0.20
685 827 0.37
686 472 0.21
687 18 0.01
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.35
Consensus pattern (682 bp):
TTTTTCTTCATGTTTCTCAAAGTAACATTCAATTATAGTCTGTTTTAACAAAAAAGTAAAAAAAA
TTAACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTCTGAAAAAA
ATAGTGACTATAAAAGGACGTTTCAAACAAATGAATGCCTTTTTCATCATGTTTCTTCAGATACA
CATTCAATTATAATATTATTTGACAAAAAATGTAAAAAAAATTAAACTTAAAATCAATTTTGAGA
TTATAAAGCCATTTAAACTGAGTAATAAGACTTTTGAAAAAATGGGTGACTATAATGGACTTTTT
TTGCCAATGAATACACTTTTCTTACATTTTCGTAAGGTAGACATTCAATTATTGTCTGCTTTAAC
AAAAAATATAAAACAATTCAACTTAAAATCAATTATGGGATTATAAAACCATTTAAAGCGAGCAA
TAAGCAATTTGAAAGAATGAGTGACTATAAATAGACTTTTCTTCTCAATAAATAGATTTTTTACA
CGTTTCTTAAAACAAGCATTCAATTATAGTCTATTTTAATAAAAAATATAAAAAAATTTAACATA
AAACCAATCATGAGAATATAAAACTATTTAAAGCGAGTAATAAGACTTTTGAAGGAATGGGTGAC
AATAAACAGACTTTTCTTTGTCCATGAATCCC
Found at i:12428 original size:171 final size:162
Alignment explanation
Indices: 12205--12523 Score: 311
Period size: 172 Copynumber: 1.9 Consensus size: 162
12195 CATTTTTCTT
* * * * * *
12205 CACGTTTCTCGAGGTAAACATTCAATTATTGTCTGTTTTAACCAATAATAT-AAAACAATTCAA-
1 CACGTTTCTCAAGGCAAACATTCAATTATAGTCTATTTTAACCAAAAATATAAAAAAAATTCAAC
* * *
12268 TTGAAAATCAATTATGGGATTATAAAACCATTTAAAGCAAGCAATAAGGCATTT-GAAGGAATGG
66 AT-AAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGCAATAAGGC-TTTCGAAGGAATAG
*
12332 GTGACTATAAATGGACTTTTCTTCTTAATGANNNNNNNNNNCTA
129 GTGACAATAAATGGACTTTTCTTCTTAATGA----------CTA
* * **
12376 CACGTTTCTTAAGGCAAGCATTCAATTATAGTCTATTTTAATGAAAAATATAAAAAAAATTCAAC
1 CACGTTTCTCAAGGCAAACATTCAATTATAGTCTATTTTAACCAAAAATATAAAAAAAATTCAAC
* * * ** * *
12441 ATAAAATCTATTATGAGATTGTTAAACTTTTTAAAGCGAGTAATAAGGCTTTCGAAGGAATAGGT
66 ATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGCAATAAGGCTTTCGAAGGAATAGGT
*
12506 GGCAATAAATGGACTTTT
131 GACAATAAATGGACTTTT
12524 NNNNNNNNNN
Statistics
Matches: 123, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
171 45 0.37
172 77 0.63
173 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.32
Consensus pattern (162 bp):
CACGTTTCTCAAGGCAAACATTCAATTATAGTCTATTTTAACCAAAAATATAAAAAAAATTCAAC
ATAAAATCAATTATGAGATTATAAAACCATTTAAAGCAAGCAATAAGGCTTTCGAAGGAATAGGT
GACAATAAATGGACTTTTCTTCTTAATGACTA
Found at i:15026 original size:169 final size:169
Alignment explanation
Indices: 14684--15070 Score: 427
Period size: 169 Copynumber: 2.3 Consensus size: 169
14674 NNNNNNNNNN
* * * * *
14684 AGTAATAAGGCTTTTGAAGAAATAGAAGACTATATTGGACTTTTCTTACTAATGAATGCATTTTT
1 AGTAATAAGGCTTTTGAAGAAATAGAAGACTATAATAGACTTTTCTTACCAACGAATGCATTTTC
* * *
14749 CGTCATGTTTCTCGAGGTAAACATTCAATTATTATCTGTTTTAACTAAAAATTTAAAACAATTCA
66 CGTCA-GTTTCTCGAGGTAAACATTCAATTATTATCTGTGTGAACTAAAAATATAAAACAATTCA
* **********
14814 ACTTAAAATCAATTATGGGATTATAAANNNNNNNNNNGCG
130 ACTTAAAATCAATTATGGGAATATAAAACCATTTAAAGCG
* *** * *
14854 AGTAATAAGGCTTTTGAAGAAATGGGTTACTATAATAGAGTTTTCTTGCCAACGAATGCATTTTC
1 AGTAATAAGGCTTTTGAAGAAATAGAAGACTATAATAGACTTTTCTTACCAACGAATGCATTTTC
* * *
14919 CTTACA-TTTCTCGAGGTAGACATTCAATTATTATCTGTGTGAACTAAAAATATAAAACATTTCA
66 CGT-CAGTTTCTCGAGGTAAACATTCAATTATTATCTGTGTGAACTAAAAATATAAAACAATTCA
14983 ACTTAAAATCAATTATGGGAATATAAAACCATTTAAAGCG
130 ACTTAAAATCAATTATGGGAATATAAAACCATTTAAAGCG
* * * * *
15023 AGTAATAGGGCATTTGAAG-GATTGAATGACTATAAATGGACTTTTCTT
1 AGTAATAAGGCTTTTGAAGAAATAGAA-GACTAT-AATAGACTTTTCTT
15071 CTTAATGAAT
Statistics
Matches: 177, Mismatches: 37, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
168 3 0.02
169 104 0.59
170 68 0.38
171 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.34
Consensus pattern (169 bp):
AGTAATAAGGCTTTTGAAGAAATAGAAGACTATAATAGACTTTTCTTACCAACGAATGCATTTTC
CGTCAGTTTCTCGAGGTAAACATTCAATTATTATCTGTGTGAACTAAAAATATAAAACAATTCAA
CTTAAAATCAATTATGGGAATATAAAACCATTTAAAGCG
Done.