Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397271.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_89.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4184555
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 83639 characters in sequence are not A, C, G, or T
File 2 of 11
Found at i:184855 original size:171 final size:170
Alignment explanation
Indices: 184614--187020 Score: 1917
Period size: 171 Copynumber: 14.2 Consensus size: 170
184604 TTATAGTCAA
* ** *
184614 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTTATTTTTTTTCATTTTTTATTAAAATA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGTTAAAACA
* * * *
184679 GATCATAATTGGATGTTTGCCTTAAGAAACATGAAGTGAAAATCATCCATTGAGAA-AAAATGTC
66 TATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAA-GTC
* * * ** * *
184743 AATTTATAGTCGCTCATACCTTTAAAAAACTAGTTACTCAC
130 CATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * *
184784 TTTTAAT-GTTTTAAAATGTTATAAATGATTTTAAGTTGATTTTGTTTTTCATTTTTGGTTAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTT-TTTTTCATTTTTGGTTAAAA
* * *
184848 CAGATCATAATTGGATGTTTGCCTT-GGAAA-ATGTGTAGC-AAAACCCATCCATTGACAAGAAA
64 CATATCATAATTGGATGTTTGCCTTAAGAAACA--TGAAGCGAAAA-CCATCCATTGACAAGAAA
* * * * *
184910 AGTCCATTTATAGTCACTCATGCCTTAG-AATGGCTTGTTTCTTGC
126 AGTCCATTTATAGTCACTCATGCCTTCGAAAT-ACTAGTTACTCGC
* * * * * * ** * *
184955 TTTAAATGATTTTAGAA--TTATGTAGTCGATGTTAAGGTTAATTGCTTTTCATTTTTCGTTGAA
1 TTTAAATGGTTTTATAATCTTAT-AAAT-GATTTTAA-GTTGATTTTTTTTCATTTTTGGTTAAA
* * * ** * *
185018 ACAAATCATCATTAGATGTTCACCTTAGGAAACATAAAGCGAAAACCATCCATTGACAAGAAAAG
63 ACATATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAG
* * * * *
185083 TCCATTTGTAGTCACTCATGCCCGT-GAAAGAC-AGATTAGTCTC
128 TCCATTTATAGTCACTCATG-CCTTCGAAATACTAG-TTACTCGC
* * * * **
185126 TTCAAATGGTTTTATAATCTTATAAATGATTTTAAATTTATTTGTTTTACATTTTTCATTAAAAC
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTT-TTTTTCATTTTTGGTTAAAAC
* * * *
185191 ATATCATAATTCGATGTTTGCTTTAAGAAACATGAAGCGAAAGCCATCGATTTG-CAA-AACAAG
65 ATATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCA-TTGACAAGAA-AAG
* * * * * *
185254 TCTATTTATAGGT-ACTTATTCCTTCTAAATACTACTTACTTGC
128 TCCATTTATA-GTCACTCATGCCTTCGAAATACTAGTTACTCGC
* *
185297 ATTAAATGGTTTTATAATCTTAT-AATGATTTTAAATTGAATTGTTTTTT-ATTTTTGGTTAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATT-TTTTTTCATTTTTGGTTAAAA
* * * *
185360 CATATCATACTTGGATGTTTGCCTCT-GGAAACATGATG-GAAAAGCCATCAATTGACAAGAAAA
64 CATATCATAATTGGATGTTTGCCT-TAAGAAACATGAAGCGAAAA-CCATCCATTGACAAGAAAA
* ** *
185423 GTCCATTTATAGTCATTCATGCCTTCGAAAGCCTAATTACTCGC
127 GTCCATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * * * * * *
185467 TTCAAATGGTTTTATAATCTTATAAATGATTTTAGGCTGAATTGTTTTCATTTTTTGTTAAAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGTTAAAACA
* * * * * * *
185532 TACCAAAATTGGATGTCTT-CTTTAGGAAACATGAAGCAAAAATCATCCAATGACAAGAGAAA-T
66 TATCATAATTGGATGT-TTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGA-AAAGT
* * * * *
185595 TCATTTTTAGTTACTCATTG-CTTCGAAATACTAGTTAGTTGC
129 CCATTTATAGTCACTCA-TGCCTTCGAAATACTAGTTACTCGC
* * *
185637 TTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTTCATATTTGGTTAAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTTGGTTAAAAC
* * * ** ** * *
185702 AAACCATCATTGGATGTTTGCCACAAGAAATGTGAAGCGAAAGCCATCCATTAACAAGAAAAGTC
65 ATATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAGTC
* * * * *
185767 TATTTATAGTCACTCATGCCTTTGCAATACTACTTACTCGA
130 CATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
** * * * *
185808 TTTAAATGGTTTTATAATCTGGTAAATAATTTTAAGTTGAATGTTTTTTCATTCTTGATTAAAAC
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTTTTCATTTTTGGTTAAAAC
* * *
185873 ATATCATAATTGGATGTTTGCCTCTAA-AAACATGAAGTGAAAGCTATCCATTGACAAGAAAAG-
65 ATATCATAATTGGATGTTTGCCT-TAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAGT
* * * *
185936 CCTATTAATAGCCACTCATACCTTCGAAATACTATTTACTCGC
129 CC-ATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * *
185979 GTTAAATGGTTTTATAATCTTAT-AATAATTTTAAGTCGAATTTTTTGTT-ATTTTTGGTT-AAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTG-ATTTTTT-TTCATTTTTGGTTAAAA
* * * * * ** *
186041 CATATCATACTTGGATGTTTGCC-CATGGAAACGTGATGC-AAAAGCCATTTATTGATAAGAAAA
64 CATATCATAATTGGATGTTTGCCTTA-AGAAACATGAAGCGAAAA-CCATCCATTGACAAGAAAA
* * * * * *
186104 GTCCATTTATAGTCATTTATACCTTCGAACA-CCTAATTACTCAC
127 GTCCATTTATAGTCACTCATGCCTTCGAA-ATACTAGTTACTCGC
* * * * *
186148 TTTAAATAGTTTTATAATCTTATAAATGATTTT-CGACTGAATTGTTTTT-ATTTTTTGTTAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAG-TTG-ATTTTTTTTCATTTTTGGTTAAAA
* * * * ** * * * *
186211 TAGATCATATTTGGATATTTG-CTTGGGGAAACTTTAAGCGAAAATCATCCATTGACAAGAAAAA
64 CATATCATAATTGGATGTTTGCCTT-AAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAG
** * * * * *
186275 TTTATTTACAGTCACTTATGCCTTCAAAATACTAGTCAGTCGC
128 TCCATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * * * *
186318 TTTAAATGGTTTTATAATTTTATAAATGAATTTAAGTTGATTTTTTTTTCATTCTTGGCTAAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGA-TTTTTTTTCATTTTTGGTTAAAAC
* * * * * * * ** * *
186383 AAATCATCATTGGATGTTTTCCATGAGAAACATGAACCCAAAGTCATCCACTGATAAGAAAAGTC
65 ATATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAGTC
* * * * *
186448 CATTTATAGTCACTTATGCCTTCAAAATACTACTTGCTCAC
130 CATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * * * *
186489 TTTAAATGGTTTTATAATCTTATAAATGATATTAAGTTGAGTTTCTTTCATTTTTTGTTACAACA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGTTAAAACA
* * * *
186554 TATCATAATTGGATGTTTGCCTTTAA-AAACATGAAGCGAAAGCTATTCATTGACAATAAAAGTC
66 TATCATAATTGGATGTTTGCC-TTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAGTC
* * *
186618 CATTTATAGCCACCCATACCTTCGAAATACTAGTTACTCGC
130 CATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * * *
186659 TTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTAAACATTTTTTTCATTTTTGGCTAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT-GA-TTTTTTTTCATTTTTGGTTAAAA
* ** * ** * * ** *
186724 CAAATCATAATTGTTTGTGT-CTCTTGGGAAATATGAA--GTAAA--A--GGTT---AAGAAAAT
64 CATATCATAATTGGATGTTTGC-CTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAG
* * * * *** *
186779 TCTATTTATAATCACTCATGCCATCAAAAGGTTACTTACTCGC
128 TCCATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
* * * * * * ** * *
186822 TTTGAAT-GATTTA-AAGTCTTACAATTCATTTTAAGCT-A-AATTTTT--TTTTTAGTTAAAAT
1 TTTAAATGGTTTTATAA-TCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGTTAAAAC
** ** * * * *
186881 AGCTCATAATTGGATGTTTGCCTTGGGAAACA-GAAAGTGAAAGCTATCTATTGACAAGAAAAGT
65 ATATCATAATTGGATGTTTGCCTTAAGAAACATG-AAGCGAAAACCATCCATTGACAAGAAAAGT
* * * *
186945 CCATTTATAGTCACTCATGCC-TCAGAAAGACTATTTACTTGT
129 CCATTTATAGTCACTCATGCCTTC-GAAATACTAGTTACTCGC
186987 TTTAAATGGTTTTATAATCTTATAAATGATTTTA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTA
187021 NNNNNNNNNN
Statistics
Matches: 1772, Mismatches: 382, Indels: 170
0.76 0.16 0.07
Matches are distributed among these distances:
155 1 0.00
156 37 0.02
157 1 0.00
158 8 0.00
160 2 0.00
161 2 0.00
162 23 0.01
163 44 0.02
164 2 0.00
165 45 0.03
166 21 0.01
167 3 0.00
168 4 0.00
169 161 0.09
170 585 0.33
171 733 0.41
172 91 0.05
173 9 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (170 bp):
TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTCATTTTTGGTTAAAACA
TATCATAATTGGATGTTTGCCTTAAGAAACATGAAGCGAAAACCATCCATTGACAAGAAAAGTCC
ATTTATAGTCACTCATGCCTTCGAAATACTAGTTACTCGC
Found at i:185485 original size:341 final size:342
Alignment explanation
Indices: 184614--187020 Score: 1924
Period size: 341 Copynumber: 7.1 Consensus size: 342
184604 TTATAGTCAA
* ** *
184614 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT-TATTTTTTTTCATTTTTTATTAAAAT
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT-ATTTTTGGTTAAAAC
* * * * *
184678 AGATCATA-ATTGGATGTTTGCCT-TAAGAAACATGAAGTGAAAA-TCATCCATTGAGAA-AAAA
65 AAATCATACATTGGATGTTTGCCTCT-GGAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAA
* * * ** * * * * *
184739 TGTCAATTTATAGTCGCTCATACCTTTAAAAAACTAGTTACTCACTTTTAAT-GTTTTAAAATGT
129 -GTCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTCACTTTAAATGGTTTTATAATCT
* *
184803 TATAAATGATTTTAAGTTGATTTTGTTTTTCATTTTTGGTTAAAACAGATCATAATTGGATGTTT
193 TATAAATGATTTTAAGTTGA-TTTG-TTTTCATTTTTTGTTAAAACATATCATAATTGGATGTTT
* * * * * *
184868 GCCTT-GGAAA-ATGTGTAGCAAAACCCATCCATTGACAAGAAAAGTCCATTTATA-GTCACTCA
256 GCTTTAAGAAACA--TGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGT-ACTCA
* * * * * *
184930 TGCCTTAG-AATGGCTTGTTTCTTGC
318 TACCTTCGAAAT-ACTAGTTACTCGC
* * * * * * * * *
184955 TTTAAATGATTTTAGAA--TTATGTAGTCGATGTTAAGGTT-AATTGCTTTTCATTTTTCGTTGA
1 TTTAAATGGTTTTATAATCTTAT-AAAT-GATTTTAA-GTTGAATT-TTTTTTATTTTTGGTTAA
* ** *
185017 AACAAATCAT-CATTAGATGTTCACCT-TAGGAAACATAAAGCGAAAA-CCATCCATTGACAAGA
62 AACAAATCATACATTGGATGTTTGCCTCT-GGAAACATGAAGCGAAAAGCCATCCATTGACAAGA
* * * * *
185079 AAAGTCCATTTGTAGTCACTCATGCCCGT-GAAAGAC-AGATTAGTCTCTTCAAATGGTTTTATA
126 AAAGTCCATTTATAGTCACTCATG-CCTTCGAAAGACTA-ATTACTCACTTTAAATGGTTTTATA
* * ** *
185142 ATCTTATAAATGATTTTAAATTTATTTGTTTTACATTTTTCATTAAAACATATCATAATTCGATG
189 ATCTTATAAATGATTTTAAGTTGATTTGTTTT-CATTTTTTGTTAAAACATATCATAATTGGATG
*
185207 TTTGCTTTAAGAAACATGAAGCGAAAGCCATCGATTTG-CAA-AACAAGTCTATTTATAGGTACT
253 TTTGCTTTAAGAAACATGAAGCGAAAGCCATCCA-TTGACAAGAA-AAGTCTATTTATAGGTACT
* * * * *
185270 TATTCCTTCTAAATACTACTTACTTGC
316 CATACCTTCGAAATACTAGTTACTCGC
* *
185297 ATTAAATGGTTTTATAATCTTAT-AATGATTTTAAATTGAATTGTTTTTTATTTTTGGTTAAAAC
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATT-TTTTTTATTTTTGGTTAAAAC
* * *
185361 ATATCATAC-TTGGATGTTTGCCTCTGGAAACATGATG-GAAAAGCCATCAATTGACAAGAAAAG
65 AAATCATACATTGGATGTTTGCCTCTGGAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAAG
* * * *
185424 TCCATTTATAGTCATTCATGCCTTCGAAAGCCTAATTACTCGCTTCAAATGGTTTTATAATCTTA
130 TCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTCACTTTAAATGGTTTTATAATCTTA
* * * * * *
185489 TAAATGATTTTAGGCTGAATTGTTTTCATTTTTTGTTAAAAAATACCAAAATTGGATGTCTT-CT
195 TAAATGATTTTAAGTTGATTTGTTTTCATTTTTTGTTAAAACATATCATAATTGGATGT-TTGCT
* * ** * * * * **
185553 TTAGGAAACATGAAGCAAAAATCATCCAATGACAAGAGAAATTC-ATTTTTAGTTACTCATTGCT
259 TTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGA-AAAGTCTATTTATAGGTACTCATACCT
* *
185617 TCGAAATACTAGTTAGTTGC
323 TCGAAATACTAGTTACTCGC
* * * *
185637 TTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTGATTTTTTTTTCATATTTGGTTAAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT-ATTTTTGGTTAAAAC
* * ** ** *
185702 AAACCAT-CATTGGATGTTTGCCACAAGAAATGTGAAGCG-AAAGCCATCCATTAACAAGAAAAG
65 AAATCATACATTGGATGTTTGCCTCTGGAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAAG
* * * * * *
185765 TCTATTTATAGTCACTCATGCCTTTGCAATACTACTTACTCGA-TTTAAATGGTTTTATAATCTG
130 TCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTC-ACTTTAAATGGTTTTATAATCTT
* * *
185829 GTAAATAATTTTAAGTTGAATGTT-TTTTCA-TTCTTGATTAAAACATATCATAATTGGATGTTT
194 ATAAATGATTTTAAGTTG-AT-TTGTTTTCATTTTTTG-TTAAAACATATCATAATTGGATGTTT
* * * * * **
185892 GCCTCTAA-AAACATGAAGTGAAAGCTATCCATTGACAAGAAAAGCCTATTAATAGCCACTCATA
256 G-CTTTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGTACTCATA
*
185956 CCTTCGAAATACTATTTACTCGC
320 CCTTCGAAATACTAGTTACTCGC
* * *
185979 GTTAAATGGTTTTATAATCTTAT-AATAATTTTAAGTCGAATTTTTTGTTATTTTTGGTT-AAAC
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTT-TTATTTTTGGTTAAAAC
* * * ** *
186042 ATATCATAC-TTGGATGTTTGCC-CATGGAAACGTGATGC-AAAAGCCATTTATTGATAAGAAAA
65 AAATCATACATTGGATGTTTGCCTC-TGGAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAA
* * * * *
186104 GTCCATTTATAGTCATTTATACCTTCGAACA-CCTAATTACTCACTTTAAATAGTTTTATAATCT
129 GTCCATTTATAGTCACTCATGCCTTCGAA-AGACTAATTACTCACTTTAAATGGTTTTATAATCT
* * * * * * * *
186168 TATAAATGATTTT-CGACTGAATTGTTTTTATTTTTTGTTAAAATAGATCATATTTGGATATTTG
193 TATAAATGATTTTAAG-TTGATTTGTTTTCATTTTTTGTTAAAACATATCATAATTGGATGTTTG
*** * * ** * * * * *
186232 CTTGGGGAAACTTTAAGCGAAAATCATCCATTGACAAGAAAAATTTATTTACA-GTCACTTATGC
257 CTTTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGT-ACTCATAC
* * *
186296 CTTCAAAATACTAGTCAGTCGC
321 CTTCGAAATACTAGTTACTCGC
* * * * * *
186318 TTTAAATGGTTTTATAATTTTATAAATGAATTTAAGTTGATTTTTTTTTCATTCTTGGCTAAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTT-ATTTTTGGTTAAAAC
* * ** * * *
186383 AAATCAT-CATTGGATGTTTTCC-ATGAGAAACATGAA-CCCAAAGTCATCCACTGATAAGAAAA
65 AAATCATACATTGGATGTTTGCCTCTG-GAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAA
* * * * *
186445 GTCCATTTATAGTCACTTATGCCTTCAAAATACTACTTGCTCACTTTAAATGGTTTTATAATCTT
129 GTCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTCACTTTAAATGGTTTTATAATCTT
* * *
186510 ATAAATGATATTAAGTTGAGTTT-CTTTCATTTTTTGTTACAACATATCATAATTGGATGTTTGC
194 ATAAATGATTTTAAGTTGA-TTTGTTTTCATTTTTTGTTAAAACATATCATAATTGGATGTTTG-
* * * * ** *
186574 CTTTAA-AAACATGAAGCGAAAGCTATTCATTGACAATAAAAGTCCATTTATAGCCACCCATACC
257 CTTTAAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGTACTCATACC
186638 TTCGAAATACTAGTTACTCGC
322 TTCGAAATACTAGTTACTCGC
* * * *
186659 TTTAAATGATTTTATAATCTTATAAATGATTTTAAGTTAAACATTTTTTTCATTTTTGGCTAAAA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTT-GA-ATTTTTTTTATTTTTGGTTAAAA
* * * *
186724 CAAATCATA-ATT-G-T-TTGTGTCTCTTGGGAAATATGAAG-TAAAAG------GTT---AAGA
64 CAAATCATACATTGGATGTT-TGCCTC-T-GGAAACATGAAGCGAAAAGCCATCCATTGACAAGA
* * * * * ** * * * *
186775 AAATTCTATTTATAATCACTCATGCCATCAAAAGGTTACTTACTCGCTTTGAAT-GATTTA-AAG
126 AAAGTCCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTCACTTTAAATGGTTTTATAA-
* * * * ** * * **
186838 TCTTACAATTCATTTTAAGCT-AAAT-TTTT--TTTTTAGTTAAAATAGCTCATAATTGGATGTT
190 TCTTATAAATGATTTTAAGTTGATTTGTTTTCATTTTTTGTTAAAACATATCATAATTGGATGTT
* ** * * * *
186899 TGCCTTGGGAAACA-GAAAGTGAAAGCTATCTATTGACAAGAAAAGTCCATTTATA-GTCACTCA
255 TGCTTTAAGAAACATG-AAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGT-ACTCA
* * * * *
186962 TGCC-TCAGAAAGACTATTTACTTGT
318 TACCTTC-GAAATACTAGTTACTCGC
186987 TTTAAATGGTTTTATAATCTTATAAATGATTTTA
1 TTTAAATGGTTTTATAATCTTATAAATGATTTTA
187021 NNNNNNNNNN
Statistics
Matches: 1657, Mismatches: 335, Indels: 161
0.77 0.16 0.07
Matches are distributed among these distances:
327 6 0.00
328 123 0.07
330 4 0.00
331 3 0.00
332 21 0.01
333 47 0.03
336 1 0.00
338 4 0.00
339 122 0.07
340 281 0.17
341 619 0.37
342 356 0.21
343 65 0.04
344 5 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (342 bp):
TTTAAATGGTTTTATAATCTTATAAATGATTTTAAGTTGAATTTTTTTTATTTTTGGTTAAAACA
AATCATACATTGGATGTTTGCCTCTGGAAACATGAAGCGAAAAGCCATCCATTGACAAGAAAAGT
CCATTTATAGTCACTCATGCCTTCGAAAGACTAATTACTCACTTTAAATGGTTTTATAATCTTAT
AAATGATTTTAAGTTGATTTGTTTTCATTTTTTGTTAAAACATATCATAATTGGATGTTTGCTTT
AAGAAACATGAAGCGAAAGCCATCCATTGACAAGAAAAGTCTATTTATAGGTACTCATACCTTCG
AAATACTAGTTACTCGC
Found at i:189042 original size:171 final size:169
Alignment explanation
Indices: 188749--190846 Score: 1377
Period size: 171 Copynumber: 12.3 Consensus size: 169
188739 TCCTAACTAT
*
188749 AAACATCCAATTATGATCTATTTTAA-CAAAAACT-AAAAAAAATTCAACTTAAAATCATTAAT-
1 AAACATCCAATTATGATCTATTTTAATCAAAAA-TGAAAAAAAA-TCAACTTAAAATCATTTATA
* * * *
188811 AAGATTATAAAACCCTTTGAAGCGAGTAATTAGGCTTTTGAAGGCATGAATGATTATAAATAGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGAC
* * * * * * *
188876 ATTTCTTATCAATTGATGACTTTCGCTTCATGTTTTGCCAATGT
129 TTTTCTT-TCAATGGATGGCTTTTGCTTCATG-TTT-CTAAGGA
* * * * * *
188920 AAACATCAAATTATGAACTGTGTTAA-CAAAAATGAAAAAGAAATCAATTTAAAATCATTTTTAA
1 AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAA-AAATCAACTTAAAATCATTTATAA
** * * * *
188984 AG-TTATAAAATTAGTTAAAGCGAGTAACAAGGCTTTTGAAGACATGACTGACTATAAATAGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGACT
* *
189048 TTTCCTTCAAATGGATGGCTTTTGCTTCAAGTTTCTTAAGGA
130 TTTCTTTC-AATGGATGGCTTTTGCTTCATGTTTC-TAAGGA
* * *
189090 AAACATCCAATCATTACCTATTTTAATCAAAAATG-AAAAAAATCAACTTAAAATCATTTAT-AA
1 AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAA
* * ** ** * *
189153 CATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGTGTGGCTATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGACTT
189218 TTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
131 TTCTT-TCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
* * * *
189258 AAACATCCAATTCTGATCTGA-TTTAATGAAGAATGAAAAAGAATTCAACTT-AAATCTATTTAT
1 AAACATCCAATTATGATCT-ATTTTAATCAAAAATGAAAAA-AAATCAACTTAAAATC-ATTTAT
* * * * * * *
189321 -AAGATTGTAAAACTATTTAAAGCGAGTAATTTA--TTTTTCAAGGGCATGAGTGACTATAAATG
63 AAAGATTATAAAACCATTTAAAGCGAGTAA-CTAGGCTTTTGAA-GGCATGAATGACTATAAATA
** ** *
189383 GACTTTTCTTGTCAGCGGATGGCTTTCACTTCATGTTTCCCT-AGCA
126 GACTTTTCTT-TCAATGGATGGCTTTTGCTTCATGTTT--CTAAGGA
** * * * * * * *
189429 AAGTATCTAATTATGTTATGTTTTAACCAAAACTAAAAAAAAATATTCAACTTAAAATCATTTAT
1 AAACATCCAATTATGATCTATTTTAATCAAAAAT-GAAAAAAA-A-TCAACTTAAAATCATTTAT
* * ** * ** *
189494 AAA-ATT-TCAAAA-CATTGAAAGCGAGTAACTAGACTTTCAAAGACATGAGCGACTATAAATGG
63 AAAGATTAT-AAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAG
* * * * ** * * *
189556 ACTATTCTTGCCAATAGATGGCATTCACTTTATGTTTCTTTAGGC
127 ACTTTTCTT-TCAATGGATGGCTTTTGCTTCATGTTTC-TAAGGA
* * *
189601 AAACATCCAATTATGATTTGTTTTAACCAAAAAT-AAAAAAAATCAACTTAAAATCATTTAT-AA
1 AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAA
* * * * * ** *
189664 GACTAT-AAATCACTCAAAGCGAGTAACAAATCTTTAGAAGGCATGAATGACTATAAAT-GAACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAG-ACT
* * * * *
189727 TTTTTTGTTAATGGATGACTTTTGCTTCATGTTTC-ACGAA
130 TTTCTT-TCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
* * * ** * ***
189767 ACACACACCCAATTATGATATGTTTTAGCCAGAAATGGAAAAATGGTTCAACTTAAAATCATTTA
1 A-A-ACATCCAATTATGATCTATTTTAATCAAAAAT-GAAAAA-AAATCAACTTAAAATCATTTA
* * * ** *** * * *
189832 T-AAGATTATAAAACTATTGAAAGGGAGTAACTAGTATTCCAAAGGCATGAGTGGCTATAAATCG
62 TAAAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAG
* ** *
189896 ACTTTTCTTGTCCATGGATGGCTTTCACCTT-ATATTTCCTAAGGA
127 ACTTTTCTT-TCAATGGATGGCTTT-TGCTTCATGTTT-CTAAGGA
* * * * *
189941 AAACTTCCAATTATGATCTAGTTTAA-CAAAAGAATGAAAAGAAATCAACTTGAAATCATTTA-C
1 AAACATCCAATTATGATCTATTTTAATC-AAA-AATGAAAAAAAATCAACTTAAAATCATTTATA
* * * ** * * *
190004 AAGATTATAAAACCATTTAAATCGAGAAATTAGTATTTTAAAGGCATGAGTGACTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGAC
* * * * * **
190069 TTCTCTAGTCAATGGATGGCTTTTGCTTTATATTTCACAAGTC
129 TTTTCT-TTCAATGGATGGCTTTTGCTTCATGTTTC-TAAGGA
* * * * * * *
190112 AAACATCAAATTATGGTCTGTTTTAAGCAAAAATTTAAAAAAAATTCAACTTCAAATCATTTCT-
1 AAACATCCAATTATGATCTATTTTAATCAAAAA-TGAAAAAAAA-TCAACTTAAAATCATTTATA
* * * * * * * **
190176 AAGACTAT-AAATCATTCAAAGCGAGTAACTAGCCTTTCGAAGGCATGAGTGACTAGAAACGGA-
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGAC
* * ** ** * *
190239 TTTTACTAGTAAATGGATGGCTTTCCCTTCACATTTTTAGGGA
129 TTTT-CT-TTCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
190282 TAAA-ATCCAATTATGATCTATTTTAATCAAAAATGAAACAAAAAT-AACTTAAAATCATTTAT-
1 -AAACATCCAATTATGATCTATTTTAATCAAAAATGAAA-AAAAATCAACTTAAAATCATTTATA
* * * ** * * ** * * *
190344 TAGATTTTTAAATTATTTAAAGCGACTTACTAGTATTTGGAAGGAAT-AAGTGACTATAAATGGA
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAA-TGACTATAAATAGA
* * * * * *
190408 CTTTTCTTACTAATGGATGG-TTTTGGCTTCGTATTCCTCGAGGC
128 CTTTTCTTTC-AATGGATGGCTTTT-GCTTCATGTTTCT-AAGGA
* * * * * **
190452 AAACATCCAATTATGGTTTGTTTTAA-CTAAAAAT-AAAAAAAATTTAACATAAAATTTTTTAT-
1 AAACATCCAATTATGATCTATTTTAATC-AAAAATGAAAAAAAA-TCAACTTAAAATCATTTATA
* * * * * *
190514 AAGACTAT-AAATCATTCAAAGCGAGTAACTA-GCTTTTCGAAGGCATGAGTAACTATAAATGGA
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTT-GAAGGCATGAATGACTATAAATAGA
* ** * *
190577 CTTTTCTTGTCAATGGATGGC-TTCGCTTCACATTTACCAAGGC
128 CTTTTCTT-TCAATGGATGGCTTTTGCTTCATGTTT-CTAAGGA
* * * *
190620 AAACATCCAATTATGATCTATTTTAACCAGAAATGAAAAAAATTTAACTTAAAATCATTTAT-AA
1 AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAA
* * * * * * * *
190684 GATTTTCAAACCATTTAAAGTGACTAAC-AAG-TATTTGAAAGGCATGAGTGACTATGAATGGAC
66 GATTATAAAACCATTTAAAGCGAGTAACTAGGCT-TTTG-AAGGCATGAATGACTATAAATAGAC
* * * * *
190747 TTTTCTTGTC-ATGAAT-GATTTTCTCTTCATGTTACTTAAGGT
129 TTTTCTT-TCAATGGATGGCTTTT-GCTTCATGTTTC-TAAGGA
* * * *
190789 AAACATCCAATTATCATCTGTTTGAATAAAAAATGAAAAAAATAATTCAACTTAAAAT
1 AAACATCCAATTATGATCTATTTTAATCAAAAATG-AAAAAA-AA-TCAACTTAAAAT
190847 AGACTTTTCT
Statistics
Matches: 1531, Mismatches: 315, Indels: 161
0.76 0.16 0.08
Matches are distributed among these distances:
166 2 0.00
167 8 0.01
168 255 0.17
169 353 0.23
170 240 0.16
171 396 0.26
172 232 0.15
173 34 0.02
174 11 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAA
GATTATAAAACCATTTAAAGCGAGTAACTAGGCTTTTGAAGGCATGAATGACTATAAATAGACTT
TTCTTTCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
Found at i:189471 original size:340 final size:338
Alignment explanation
Indices: 188749--190846 Score: 1762
Period size: 340 Copynumber: 6.2 Consensus size: 338
188739 TCCTAACTAT
* * * *
188749 AAACATCCAATTATGATCTATTTTAA-CAAAAACTAAAAAAAATTCAACTTAAAATCATTAATAA
1 AAACATCCAATTATGTTATGTTTTAACCAAAAA-TAAAAAAAATTCAACTTAAAATCATTTATAA
* ** * * ** * * * *
188813 GATTATAAAACCCTTTGAAGCGAGTAATTAGGCTTTTGAAGGCATGAATGATTATAAATAGACAT
65 GATTATAAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACTT
* * * * * * * * * * * *
188878 TTCTTATCAATTGATGACTTTCGCTTCATGTTTTGCCAATGTAAACATCAAATTATGAACTGTGT
130 TTCTTGTCAATGGATGGCTTTCGCTTCAT-ATTTACTAAGGAAAACATCCAATTATGATCTATTT
* * * *
188943 TAACAAAAATGAAAAAGAAATCAATTTAAAATCATTTTTAA-AGTTATAAAATTAGTTAAAGCGA
194 TAACAAAAATGAAAAA-AAATCAACTTAAAATCATTTATAAGA-TTATAAAACTATTTAAAGCGA
* * * * *
189007 GTAACAAGGCTTTTG-AAGACATGACTGACTATAAATAGACTTTTCCT-TCAAATGGATGGCTTT
257 GTAACAA-GTTTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTT
* ** *
189070 TGCTTCAAGTTTCTTAAGGA
320 TGCTTCATGTTTCCCAA-GC
* * * *
189090 AAACATCCAATCA--TTACCTATTTTAATCAAAAATGAAAAAAA-TCAACTTAAAATCATTTATA
1 AAACATCCAATTATGTTA--TGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * *
189152 ACATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGTGTGGCTATAAATGGACT
64 AGATTATAAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * *
189217 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTT-CTAAGGAAAACATCCAATTCTGATCTGA-T
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATATTTACTAAGGAAAACATCCAATTATGATCT-ATT
* * * *
189280 TTAATGAAGAATGAAAAAGAATTCAACTT-AAATCTATTTATAAGATTGTAAAACTATTTAAAGC
193 TTAA-CAAAAATGAAAAA-AAATCAACTTAAAATC-ATTTATAAGATTATAAAACTATTTAAAGC
** * * **
189344 GAGTAATTTA-TTTTTCAAGGGCATGAGTGACTATAAATGGACTTTTCTTGTCAGCGGATGGCTT
255 GAGTAA-CAAGTTTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
** *
189408 TCACTTCATGTTTCCCTAGC
319 TTGCTTCATGTTTCCCAAGC
* * *
189428 AAAGTATCTAATTATGTTATGTTTTAACCAAAACTAAAAAAAAATATTCAACTTAAAATCATTTA
1 AAA-CATCCAATTATGTTATGTTTTAACCAAAA--ATAAAAAAA-ATTCAACTTAAAATCATTTA
* * * * *
189493 TAAAATT-TCAAAA-CATTGAAAGCGAGTAACTAGACTTTCAAAGACATGAGCGACTATAAATGG
62 TAAGATTAT-AAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * * * * * * * *
189556 ACTATTCTTGCCAATAGATGGCATTCACTTTATGTTT-CTTTAGGCAAACATCCAATTATGATTT
126 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCATATTTAC-TAAGGAAAACATCCAATTATGATCT
* * * * *
189620 GTTTTAACCAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGACTATAAATC-ACTCAAAG
190 ATTTTAA-CAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAG
* * * * * * *
189683 CGAGTAACAAATCTTT-AGAAGGCATGAATGACTATAAATGAACTTTTTTTGTTAATGGATGACT
254 CGAGTAACAAGTTTTTGA-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* *
189747 TTTGCTTCATGTTTCACGAAAC
318 TTTGCTTCATGTTTC-CCAAGC
* * * * * ***
189769 ACACACCCAATTATGATATGTTTTAGCCAGAAATGGAAAAATGGTTCAACTTAAAATCATTTATA
1 AAACATCCAATTATGTTATGTTTTAACCAAAAAT--AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
189834 AGATTATAAAACTATTGAAAGGGAGTAACTAGTATTCCAAAGGCATGAGTGGCTATAAATCGACT
64 AGATTATAAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * *
189899 TTTCTTGTCCATGGATGGCTTTCACCTT-ATATTTCCTAAGGAAAACTTCCAATTATGATCTAGT
129 TTTCTTGTCAATGGATGGCTTTC-GCTTCATATTTACTAAGGAAAACATCCAATTATGATCTATT
* * * * *
189963 TTAACAAAAGAATGAAAAGAAATCAACTTGAAATCATTTACAAGATTATAAAACCATTTAAATCG
193 TTAAC-AAA-AATGAAAAAAAATCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCG
* ** * *
190028 AGAAATTAGTATTTT-AAAGGCATGAGTGACTATAAATGGACTTCTCTAGTCAATGGATGGCTTT
256 AGTAACAAGT-TTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * *
190092 TGCTTTATATTTCACAAGTC
320 TGCTTCATGTTTCCCAAG-C
* * * * * *
190112 AAACATCAAATTATGGTCTGTTTTAAGCAAAAATTTAAAAAAAATTCAACTTCAAATCATTTCTA
1 AAACATCCAATTATGTTATGTTTTAACCAAAAA--TAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
190177 AGACTAT-AAATCATTCAAAGCGAGTAACTAGCCTTTCGAAGGCATGAGTGACTAGAAACGGA-T
64 AGATTATAAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * *
190240 TTTACTAGTAAATGGATGGCTTTCCCTTCACATTT-TTAGGGATAAA-ATCCAATTATGATCTAT
129 TTT-CTTGTCAATGGATGGCTTTCGCTTCATATTTACTAAGGA-AAACATCCAATTATGATCTAT
* * * *
190303 TTTAATCAAAAATGAAACAAAAAT-AACTTAAAATCATTTATTAGATTTTTAAATTATTTAAAGC
192 TTTAA-CAAAAATGAAA-AAAAATCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGC
* * * * * * * *
190367 GACTTACTAGTATTTGGAAGGAATAAGTGACTATAAATGGACTTTTCTT-ACTAATGGATGG-TT
255 GAGTAACAAGTTTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTT
*
190430 TTGGCTTC--GTATTCCTCGAGGC
319 TT-GCTTCATGT-TTCC-C-AAGC
* * * **
190452 AAACATCCAATTATGGTT-TGTTTTAACTAAAAATAAAAAAAATTTAACATAAAATTTTTTATAA
1 AAACATCCAATTAT-GTTATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * *
190516 GACTAT-AAATCATTCAAAGCGAGTAACTAG-CTTTTCGAAGGCATGAGTAACTATAAATGGACT
65 GATTATAAAACCATTCAAAGCGAGTAACTAGTC-TTTCAAAGGCATGAGTGACTATAAATGGACT
* * *
190579 TTTCTTGTCAATGGATGGC-TTCGCTTCACATTTACCAAGGCAAACATCCAATTATGATCTATTT
129 TTTCTTGTCAATGGATGGCTTTCGCTTCATATTTACTAAGGAAAACATCCAATTATGATCTATTT
* * * * * * * *
190643 TAACCAGAAATGAAAAAAATTTAACTTAAAATCATTTATAAGATTTTCAAACCATTTAAAGTGAC
194 TAA-CAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAG
* * * * *
190708 TAACAAGTATTTGAAAGGCATGAGTGACTATGAATGGACTTTTCTTGTC-ATGAAT-GATTTTCT
258 TAACAAGTTTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-G
* ** *
190771 CTTCATGTTACTTAAGGT
322 CTTCATGTTTCCCAA-GC
** * * **
190789 AAACATCCAATTATCATCTGTTTGAATAAAAAATGAAAAAAATAATTCAACTTAAAAT
1 AAACATCCAATTATGTTATGTTTTAACCAAAAAT--AAAAAA-AATTCAACTTAAAAT
190847 AGACTTTTCT
Statistics
Matches: 1418, Mismatches: 275, Indels: 129
0.78 0.15 0.07
Matches are distributed among these distances:
336 3 0.00
337 63 0.04
338 249 0.18
339 177 0.12
340 422 0.30
341 120 0.08
342 199 0.14
343 180 0.13
344 4 0.00
345 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (338 bp):
AAACATCCAATTATGTTATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAG
ATTATAAAACCATTCAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACTTT
TCTTGTCAATGGATGGCTTTCGCTTCATATTTACTAAGGAAAACATCCAATTATGATCTATTTTA
ACAAAAATGAAAAAAAATCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAA
CAAGTTTTTGAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTC
ATGTTTCCCAAGC
Found at i:190379 original size:511 final size:502
Alignment explanation
Indices: 188749--190846 Score: 1672
Period size: 511 Copynumber: 4.1 Consensus size: 502
188739 TCCTAACTAT
* *
188749 AAACATCCAATTATGATCTATTTTAA-CAAAAACT-AAAAAAAATTCAACTTAAAATCATTAATA
1 AAACATCCAATTATGATCTATTTTAATCAAAAA-TGAAAAAGAATTCAACTTAAAATCATTTATA
** * * ** ** * * * *
188812 AGATTATAAAACCCTTTGAAGCGAGTAATTAGGCTTTTGAAGGCATGAATGATTATAAATAGACA
65 AGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * * * * *
188877 TTTCTTATCAATTGATGACTTTCGCTTCATGTTTTGCCAATGTAAACATCAAATTATG-AACTGT
130 TTTCTTGTCCATGGATGGCTTTCACTTCAT-ATTT-CCTAGGCAAACTTCCAATTATGTTA--GT
* * * *
188941 GTTAAC-AAAAATGAAAAAGAAA-TCAATTTAAAATCATTTTTAA-AGTTATAAAATTAGTT-AA
191 TTTAACAAAAAAT-AAAAA-AAATTCAACTTAAAATCATTTATAAGA-TTATAAAA-CA-TTCAA
* ** ** * * * *
189002 AGCGAGTAACAAGGCTTTTGAAGACATGACTGACTATAAATAGACTTTTCCT-TCAAATGGATGG
251 AGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGAC-TTTCTTGTC-AATGGATGG
* * ** * * * * * * *
189066 CTTTTGCTTCA-AGTTTCTTAAGGAAAACATCCAATCATTACCTATTTTAATCAAAAATGAAAAA
314 C-TTCGCTTTATA-TTTCACAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAA
* * * * *
189130 AATCAACTTAAAATCATTTATAACATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGG
377 AATCAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGCGAGTAACTAGTCTTTCGAAGG
* * * ** *
189195 CATGTGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTAAGGA
441 CATGAGTGACTATAAATGGACTTTTCTTGTAAATGGATGGCTTTTGCTTCACATTT-TTAGGA
* * *
189258 AAACATCCAATTCTGATCTGA-TTTAATGAAGAATGAAAAAGAATTCAACTT-AAATCTATTTAT
1 AAACATCCAATTATGATCT-ATTTTAATCAAAAATGAAAAAGAATTCAACTTAAAATC-ATTTAT
* * * *
189321 AAGATTGTAAAACTATTTAAAGCGAGTAATTTA-TTTTTCAAGGGCATGAGTGACTATAAATGGA
64 AAGATTATAAAACTATTTAAAGCGAGTAA-CTAGTATTTCAAAGGCATGAGTGACTATAAATGGA
* * * *
189385 CTTTTCTTGT-CAGCGGATGGCTTTCACTTCATGTTTCCCTA-GCAAAGTATCTAATTATGTTAT
128 CTTTTCTTGTCCA-TGGATGGCTTTCACTTCATATTT-CCTAGGCAAACT-TCCAATTATGTTA-
* *
189448 GTTTTAACCAAAACTAA-AAAAAAATATTCAACTTAAAATCATTTATAAAATT-TCAAAACATTG
189 GTTTTAA-CAAAA--AATAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTAT-AAAACATTC
* * * *
189511 AAAGCGAGTAACTAG-ACTTTCAAAGACATGAGCGACTATAAATGGACTATTCTTGCCAATAGAT
249 AAAGCGAGTAACTAGTA-TTTCAAAGGCATGAGTGACTATAAATGGACT-TTCTTGTCAATGGAT
* * *** *
189575 GGCATTCACTTTATGTTTCTTTAGGCAAACATCCAATTATGATTTGTTTTAACCAAAAATAAAAA
312 GGC-TTCGCTTTATATTTCACAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAA
* * * *
189640 AAATCAACTTAAAATCATTTATAAGACTATAAATCACTCAAAGCGAGTAACAAATCTTTAGAAGG
376 AAATCAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGCGAGTAACTAGTCTTTCGAAGG
* * * * * * *
189705 CATGAATGACTATAAATGAACTTTTTTTGTTAATGGATGACTTTTGCTT--CATGTTTCACGAA
441 CATGAGTGACTATAAATGGACTTTTCTTGTAAATGGATGGCTTTTGCTTCACAT-TTTTA-GGA
* * * ** * *
189767 ACACACACCCAATTATGATATGTTTTAGCCAGAAATGGAAAAATG-GTTCAACTTAAAATCATTT
1 A-A-ACATCCAATTATGATCTATTTTAATCAAAAAT-GAAAAA-GAATTCAACTTAAAATCATTT
* * * * *
189831 ATAAGATTATAAAACTATTGAAAGGGAGTAACTAGTATTCCAAAGGCATGAGTGGCTATAAATCG
62 ATAAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGG
*
189896 ACTTTTCTTGTCCATGGATGGCTTTCACCTT-ATATTTCCTAAGGAAAACTTCCAATTATGATCT
127 ACTTTTCTTGTCCATGGATGGCTTTCA-CTTCATATTTCCT-AGGCAAACTTCCAATTATG-T-T
* * * *
189960 AG-TTTAACAAAAGAATGAAAAGAAA-TCAACTTGAAATCATTTACAAGATTATAAAACCATTTA
188 AGTTTTAACAAAA-AAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CATTCA
* * * * *
190023 AATCGAGAAATTAGTATTTTAAAGGCATGAGTGACTATAAATGGACTTCTCTAGTCAATGGATGG
250 AAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTT-TCTTGTCAATGGATGG
* * * * *
190088 CTTTTGCTTTATATTTCACAAGTCAAACATCAAATTATGGTCTGTTTTAAGCAAAAATTTAAAAA
314 C-TTCGCTTTATATTTCACAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAA--TAAAAA
* * *
190153 AAATTCAACTTCAAATCATTTCTAAGACTATAAATCATTCAAAGCGAGTAACTAGCCTTTCGAAG
376 AAA-TCAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGCGAGTAACTAGTCTTTCGAAG
* * * **
190218 GCATGAGTGACTAGAAACGGA-TTTTACTAGTAAATGGATGGCTTTCCCTTCACATTTTTAGGGA
440 GCATGAGTGACTATAAATGGACTTTT-CTTGTAAATGGATGGCTTTTGCTTCACATTTTTA-GGA
*
190282 TAAA-ATCCAATTATGATCTATTTTAATCAAAAATGAAACAA-AAAT-AACTTAAAATCATTTAT
1 -AAACATCCAATTATGATCTATTTTAATCAAAAATGAAA-AAGAATTCAACTTAAAATCATTTAT
* * * * * * ** * *
190344 TAGATTTTTAAATTATTTAAAGCGACTTACTAGTATTTGGAAGGAATAAGTGACTATAAATGGAC
64 AAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** * * *
190409 TTTTCTT-ACTAATGGATGGTTTTGGCTTCGTA-TTCCTCGAGGCAAACATCCAATTATGGTTTG
129 TTTTCTTGTC-CATGGATGGCTTTCACTTCATATTTCCT--AGGCAAACTTCCAATTAT-GTTAG
* * * ** * *
190472 TTTTAACTAAAAATAAAAAAAATTTAACATAAAATTTTTTATAAGACTATAAATCATTCAAAGCG
190 TTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACATTCAAAGCG
* *
190537 AGTAACTAGCT-TTTCGAAGGCATGAGTAACTATAAATGGACTTTTCTTGTCAATGGATGGCTTC
255 AGTAACTAG-TATTTCAAAGGCATGAGTGACTATAAATGGAC-TTTCTTGTCAATGGATGGCTTC
* * * * * *
190601 GCTTCACATTT-ACCAAGGCAAACATCCAATTATGATCTATTTTAACCAGAAATGAAAAAAATTT
318 GCTTTATATTTCA-CAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAAT-AAAAAAAATC
* * * * * * * *
190665 AACTTAAAATCATTTATAAGATTTTCAAACCATTTAAAGTGACTAACAAGTATTT-GAAAGGCAT
381 AACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGCGAGTAACTAGTCTTTCG-AAGGCAT
* * * * * ** * *
190729 GAGTGACTATGAATGGACTTTTCTTGT-CATGAAT-GATTTTCTCTTCATGTTACTTAAGGT
444 GAGTGACTATAAATGGACTTTTCTTGTAAATGGATGGCTTTT-GCTTCACATT--TTTAGGA
* * * * *
190789 AAACATCCAATTATCATCTGTTTGAATAAAAAATGAAAAAAATAATTCAACTTAAAAT
1 AAACATCCAATTATGATCTATTTTAATCAAAAATG--AAAAAGAATTCAACTTAAAAT
190847 AGACTTTTCT
Statistics
Matches: 1275, Mismatches: 242, Indels: 143
0.77 0.15 0.09
Matches are distributed among these distances:
505 4 0.00
506 39 0.03
507 84 0.07
508 60 0.05
509 129 0.10
510 253 0.20
511 390 0.31
512 153 0.12
513 60 0.05
514 92 0.07
515 7 0.01
516 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (502 bp):
AAACATCCAATTATGATCTATTTTAATCAAAAATGAAAAAGAATTCAACTTAAAATCATTTATAA
GATTATAAAACTATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTT
TTCTTGTCCATGGATGGCTTTCACTTCATATTTCCTAGGCAAACTTCCAATTATGTTAGTTTTAA
CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACATTCAAAGCGAGTAAC
TAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTTCTTGTCAATGGATGGCTTCGCTTTATA
TTTCACAAGGCAAACATCCAATTATGATCTGTTTTAACCAAAAATAAAAAAAATCAACTTAAAAT
CATTTATAAGACTATAAATCATTCAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAA
ATGGACTTTTCTTGTAAATGGATGGCTTTTGCTTCACATTTTTAGGA
Found at i:191117 original size:274 final size:272
Alignment explanation
Indices: 190570--191117 Score: 619
Period size: 274 Copynumber: 2.0 Consensus size: 272
190560 GAGTAACTAT
* *
190570 AAATGGACTTTTCTTGTCAATGGATGGCTTCGCTTCACATTTACCAAGGCAAACATCCAATTATG
1 AAATAGACTTTTCTTATCAATGGATGGCTTCGCTTCACATTTACCAAGGCAAACATCCAATTATG
* * * *
190635 ATCTATTTTAACCAGAAATGAAAAAAATTTAACTTAAAATCATTTATAAGATTTTCAAACCATTT
66 ATCTATTTGAACCAAAAATGAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTT
* * *
190700 AAAGTGACTAACAAGTATTTGAAAGGCATGAGTGACTATGAATGGACTTTTCTTGTCATGAATGA
131 AAAGCGACTAACAAGTATTTGAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCATGAATGA
* * * * * * *
190765 TTTTCTCTTCATGTTACTTAAGGTAAACATCCAATTATCATCTGTTTGAATAAAAAATGAAAAAA
196 CTTTCACTTCA-GTTACTTAAGGCAAACATCAAATTATAATCTATTTGAACAAAAAATGAAAAAA
190830 ATAATTCAACTTA
260 ATAATTCAACTTA
* * **
190843 AAATAGACTTTTCTTATCAATGGATGGCTTTTGCTTCATATTTTTCAAGGCAAACATCCAATTAT
1 AAATAGACTTTTCTTATCAATGGATGGC-TTCGCTTCACATTTACCAAGGCAAACATCCAATTAT
* * *
190908 GATCTGA-TTGGATCAAAAATGAAAAAAAATTTAACTTAAAATTATTTATAAGATTATAAAACCA
65 GATCT-ATTTGAACCAAAAATG-AAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCA
* * *
190972 -TTAAAGCGAGC-AACTAA-TATTTTGAAA-GCTTGAGTGGCTATATAAATAGAGTTTT-TTGTC
128 TTTAAAGCGA-CTAAC-AAGTA-TTTGAAAGGCATGAGTGAC--TATAAATAGACTTTTCTTGTC
* * * * * *
191032 AATGGATGGCTTTCACTTTGCA-TTCCTTGAGGCAAATATCAAATTATAATCTATTTTAACAAAA
188 -ATGAATGACTTTCAC-TT-CAGTTACTTAAGGCAAACATCAAATTATAATCTATTTGAACAAAA
* *
191096 AATG-ACAAAA-GATTCAACTTA
250 AATGAAAAAAATAATTCAACTTA
191117 A
1 A
191118 CATCACTTAC
Statistics
Matches: 230, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
273 26 0.11
274 80 0.35
275 60 0.26
276 60 0.26
277 2 0.01
278 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (272 bp):
AAATAGACTTTTCTTATCAATGGATGGCTTCGCTTCACATTTACCAAGGCAAACATCCAATTATG
ATCTATTTGAACCAAAAATGAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTT
AAAGCGACTAACAAGTATTTGAAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCATGAATGA
CTTTCACTTCAGTTACTTAAGGCAAACATCAAATTATAATCTATTTGAACAAAAAATGAAAAAAA
TAATTCAACTTA
Found at i:199842 original size:171 final size:169
Alignment explanation
Indices: 198749--220424 Score: 9262
Period size: 171 Copynumber: 127.3 Consensus size: 169
198739 TTTTTTGAGA
* * * * * *
198749 CAAACATCCAATCATGATATGTTTTAGCCAAAAATGAAAAAAAAAGCTCAAATTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAA-TTCAACTTAAAATCATTTA
* * * * * * * * **
198814 TAAGATTATAAAACTATTTAAAGTGAGTAATTAGTCTTTTGAA-GCATAAATGATTGTAAATCAA
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * *
198878 CTTTTCTTATCAATTGATGGCTTTCGATTCACATTT-TTCAAGG
128 CTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* * * * *
198921 CAAACATCCAATTATGGTCTATTTT--TAAAAAATGAAAAAAAA-TCTACTTAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
** * * * * *
198983 AGATTATAAAACCATTTAAATTGAGCAACTAGTATTTCAAAGGCATGAATGGCTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
199048 TTTCTAGTTAATGGATGGATTTCACTTCACGTTTCTCAAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * *
199089 CAAACATCCAATTATGTTCTG-TTTAACTAAACATAAAAAAAAATTCAACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * ** ** * *
199153 AGAATAT-AAATCATCCAAAATGAGTAATTAGCCTTTCGAAGGCATGAGTGACTATAAATGGAC-
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
199216 TGTGTTGTCAATGGATGGCTTTCATATCATGTTTCTTAAGA
130 TTTCTTGTCAATGGATGGCTTTGAT-TCACGTTTCTTAAGG
* * *** * * * ** *
199257 CAAACATCTAGTTATG-TCCCATTTAAC-CAAAATGAAAAAAAAAT-AGCTTAAAATCATCGATT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * * *
199319 ATATTTTAAAACCATTTACAGCGACTGACTAGTATGTGGAAGGTATAAGTGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
** ** * * * *
199384 TTTCTTACCAATGGATGATTTTCACTTCATGCTTCCCT-AGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACG-TTTCTTAAGG
* *
199425 CAAACATCCAATTATGATCTATTTTAACAAAAAATATAAAAAAA-TCAACTTAAAATCATTTATG
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATA-AAAAAAATTCAACTTAAAATCATTTATA
** * * * *
199489 AGATTATAAATTCATTTAAATCGAGTAACTAGTATTTCGAACGCATGAGTGACTATATATGGA-T
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
199553 TTCTCTAGTCAATGGATGGCTATCACTTCACATTT-TCAAAGA
130 TT-TCTTGTCAATGGATGGCTTTGA-TTCACGTTTCT-TAAGG
* * * * **
199595 CAAATATCTAATTATGAT-TTTTGTTCACAAAAAATGAATAAAAGGTTCAACTTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTT-TTAACAAAAAAT-AA-AAAAAATTCAACTTAAAATCATTTA
* * * * * * * *
199659 TAAGATTATAAAACCATTTAAAGTGAGTAATTAGTCTTCCGAAGGCCTAAATGAGTGTAAATGGA
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * *
199724 CTATTCTTGTCAATTGATAGGCTTTGATGCACCTTTCTTAAGG
128 CTTTTCTTGTCAATGGAT-GGCTTTGATTCACGTTTCTTAAGG
* *
199767 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAACAAATTTCAACTTAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAA-AAAATTCAACTTAAAATCATTTATA
* * * * * *
199832 AGATTATAAAACCATTGAAAGCAAGTAACTAGGCTTTCAAAGGCATGAGTGACAATAAATAGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * **
199897 TTTCTTGTTAATGGATTGCTTCTGCTTCATGTTTCCCAAGG
130 TTTCTTGTCAATGGATGGCTT-TGATTCACGTTTCTTAAGG
* * * *
199938 CAAGCATCCAATTATGATCTGTTTTGATC-AAAAATGAAAAAAATTCAACTTAAAGTCATTTATA
1 CAAACATCCAATTATGATCTGTTTT-AACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * *
200002 AGACTT-TAAAACCATTGAAAGCGAGTAACTAGGCTTTCGAAGGTATGAGTAACTATAAATGGAC
65 AGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * ** * *
200066 TTTTTTTGTTAATGGATGGCTTTCACTTTTCATTTCCTAAGG
129 TTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* *
200108 CAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAGAAAATTCAACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAA-AAAATTCAACTTAAAATCATTTATA
** * * * * **
200173 AGATTATAAAACC-TTTAAATTGAGTAACTAGTATTTTGGAGGCATGAGTGA-TGTAAATACACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
200236 TATCTAGTTAATGGATGACTTCT-ACTTCATGTTTCTTAAGG
130 TTTCTTGTCAATGGATGGCTT-TGA-TTCACGTTTCTTAAGG
* * ** * * * * *
200277 AAAATATTTAATTATGATCTATTTTAACCAAAATTGAAAGAAAATTCAATTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * ** * ** * *
200342 AGATCATAATATCATTTAAAGAAAGTAATTAACCTTTCGAAGGCATAAG-GTACTATAAATAGAC
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTG-ACTATAAATGGAC
** * * ** * * * *
200406 -TTTCTCATCAGTAGATGGCTTTCTCTTCATGTTTTTTGAGA
129 TTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * *
200447 CAAAAATCAAATTATGATCTATTTTAACAAAAAATAAAAAACAA-TCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAA-AATTCAACTTAAAATCATTTATA
* * * * * *
200511 GGATTATAAATCCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTAACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * ** *
200576 TCTCTAGTCAATGGATAGCTTTCTCTTCACATTT-TTCAAGG
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* * * *
200617 CAAACATCCAATTATGTTCTGTTTTAACTAAAAATTAAAAAAAATT-AACTTAAAATCATTCACA
1 CAAACATCCAATTATGATCTGTTTTAAC-AAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* ** * ** * * * *
200681 AGATTGT-AAATGATTCAAAATGAGTAACTAGCCTTTTGAAGGTATAAGTGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * *
200745 TTTCTTGTCAATGAATGACTTTCCCTTCATGTTTCTCAAGA
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * *
200786 AAAATATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAAATTGAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTAT
* * ** * ** * *
200851 AAGATTTTAAAA-CATTGAAAGTTAGTAACTAGTATTTAAAAGGCATGAGTAACTATAAATGGGC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * *** * * * * *
200915 TTTTCTTATCAATAGATAATTTTCACTTTACATTTTTTGAGG
129 TTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* *
200957 CAAACATCTAATTATGATCTATTTTAACAAAAGAAT-AAAAAAA-TCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAA-AATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * * *
201020 AAATTACAAAACCATTTGAAGCGAGTAATTAGGCCTTCAAAGGCATAAATGACTATAAATGGAAT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
** * * * **
201085 TTTCTTGTCAATAAATGGCTTTCACTTGACGTTT-TCCAACA
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCT-TAAGG
* * * * * * * *
201126 TAAATATCAAATTATGATATGTGTTAACAAAAAAT-AAAAAAA-TCAATTTAAAATTATTTTTAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * * * * *
201189 -AGTTACAAAATCACTTAAAACGAGTAACAAGGCTTTCAAAGGCATTAATGACTATTAATGGACT
66 GA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
201253 TTTGTT-ACAAATGAATGGCTTTCACTTCACATTTC-TAGAGG
130 TTTCTTGTC-AATGGATGGCTTTGA-TTCACGTTTCTTA-AGG
* * * * *** * *
201294 TAAACATCAAATTATGATATGTTGTAGTGAAAAATGAAAAGAAATTCAACTCT-AAACCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACT-TAAAATCATTTAT
* * * * * * ** * *
201358 AAGATTATAAAACTATTTAAAGTGAGTAATTAATATTTTGAAGATATAAGTGGCTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * *
201423 TTTTCTTGTCAATAGATAGCTTTTGCTTCACATTTCTTAAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * *
201465 TC-AACATCCAATTATGATCTATTTGAGCCAAAAATAAAAAATAATTTAACTTAAAATCATTTAT
1 -CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAA-AATTCAACTTAAAATCATTTAT
* ** * * ** *
201529 AAGATTTTAAAACCATTTAAAATGACTAACTAGTATTTCGAAGGCATGAGTGACTGCAAATGAAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
** * ** * * *
201594 TTTTCTTGTGGAGGGATGATTTTTGCTTCATGTTTCATAAGG
129 TTTTCTTGTCAATGGATG-GCTTTGATTCACGTTTCTTAAGG
* * * * * *
201636 AAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAAATTTAAGTTAAAAATTATTTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTT-AAAATCATTTAT
* * * ** * * *
201701 ATGATTATAAAACCA-TTAGAAGCGAGTAATTAGACTTTTAAAGGCATAAATGACTATAAATGAA
64 AAGATTATAAAACCATTTA-AAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * *
201765 CTTTTCTTGTCAATTGATGACTTTTGCTTCATGTTT-TCCAATG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCT-TAAGG
* * * * * * *
201808 CAAACATCAAATTATGATCTATGTGTAACAAAAAATGAAAAAAAAAGTGAACTTAAAACCATTTT
1 CAAACATCCAATTATGATCTGT-TTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTA
* ** * * * *
201873 TAAGGTTATAAAATAACTTAAAGCGAGTAACTAGGC-TTCTAAAGG-ATGAGTGTCTATAAATGG
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC-GAAGGCATGAGTGACTATAAATGG
* * * *
201936 ACTTTTCTAGTCAATGGATGGCTTTTGCTTCACATTTCTCAAGG
127 ACTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
** * * ** *
201980 TGAACATCCAATTATGATTTTTTTTAATGAAAAATGAAAAAAAAATTCAACTTAAAATCATTTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTAT
** * * *
202045 AAGATTATAAAACCATTTAATA-TAAGTAACTTGTCTTTC-AAGGGCATAAGTGAGTATAAATGG
64 AAGATTATAAAACCATTTAA-AGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGG
* * * * * *
202108 ACTTTTTTTGTTAATGAATGACTTTCGGTTCATGTTTCTCT-AGG
127 ACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCT-TAAGG
* ** * *** * * *
202152 CAAACATTCAACAATGATTTGTTTTATTGAAAAATAAAAAAAAATCAACTTAGAATCATTTACAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * * ** * *
202217 GATTCTAAAATCATTTAAAGTGAGTAACAAGCCATTCCAAGATATAAATGACTATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * *
202282 TTCTTGTAAATGGATGGCTTTCATTTCATGTTT-TTCACGG
131 TTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTT-AAGG
* * * *
202322 CAAGCATCCAATTATGATATGTTTTAACCAAAAAAGAAAAGAAATTCAA-TGTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACT-TAAAATCATTTAT
* * * * *
202386 AAGATTATAAAACCATTTAAAGTGAATAACTAGTATTTCGAAGGCATGAATGTCTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * ** * *
202451 TTTTCTTGTCAATGGATAGCTATAACTTTGCATTTCCTAAGG
129 TTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
202493 CGAACATCCAATTATGATCTGTTTGAGCTAAAAATAAAAATAAAGTT-AACTTTAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAA-AAA-TTCAACTTAAAATCATTTAT
* * * * * *
202557 AAGATTTTAAAACCATTTAAAACG-GCTAACTAGTATTTAGAAGTCATGAGTGACTATAAATAGA
64 AAGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * *** * * * *
202621 CTTTTTTTATCAATGGATCATTTTTACTTTACGTTTCATGAGG
128 CTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
202664 CAAACATCCAATTATGATCTATTTTAAC-TAAAATAAAAAAACTTCAAGTTAAAATCATTTATAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * ** * * *
202728 GATTATAAAACCATTTGAAGCAAGTAATTAGGCTTTTAAAGGCATGAATAACCATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * *
202793 TTGTTGTCAATTGATGACTTTCACTTTACGTTT-TTTAGTG
131 TTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAG-G
* * * * *
202833 TAAACATCAAATTATGATCTGTGTGTAACAAAAAATGAAAAAAAAGTCAATTTAAAATCAGTTT-
1 CAAACATCCAATTATGATCTGT-TTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCA-TTTA
* * * ** * * * *
202897 TAA-AGTTATAAAATCACTTAAAGCGAGTAACTAGTATTTTAAAAGCGTGAGTGGCTATAAATAG
63 TAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * **
202961 A-TATTT-TTAATCAATGGATGACTTTTACTTCACTTTTCCTATTG
127 ACT-TTTCTT-GTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * ***
203005 CAAACATCCAATTATGATCTATTTGAGTTAAAAATGAAAAAAAAAGTT-AACTTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAA-TTCAACTTAAAATCATTTA
* * * * *
203069 TAAGATTTTAAAACTATTTAAGGCG-GTTAACTAG-CATTT-GAAAGGCATGACTAACTATAAAT
63 TAAGATTATAAAACCATTTAAAGCGAG-TAACTAGTC-TTTCG-AAGGCATGAGTGACTATAAAT
* ** * * **
203131 GGACTTTTCTTATCAATGGATGATTTTTGCTTCACATTTCTCGAGG
125 GGACTTTTCTTGTCAATGGATG-GCTTTGATTCACGTTTCTTAAGG
* * * * * * * * *
203177 AAAACATCCAATTATAATGTATTTTAACAAAAAATGAAAACAAGTCAAGTTAAAATCATTTATAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * *
203242 GATTATAAAACCATTTGAAGCGAGTAATTAGGCTTTCAAAGGAATAAATGACTATAAATGGA-TA
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT-
** * * * * * *
203306 TTTCTCATCAATCGATGACTTTCGCTTAACGTTT-TTCTATG
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* * * * * *
203347 TAAACATCAAATTATGATCAATG-TGTAACAAAAAATGAAACAAAAGTT-AATTTAAAATTATTT
1 CAAACATCCAATTATGATC--TGTTTTAACAAAAAAT-AAA-AAAAATTCAACTTAAAATCATTT
* * * * *
203410 -TAA-AGTAATAAAATCACTTAAAGCGAGTAACTAGGCTTTCAAAGG-ATGAGTGACTATAAATG
62 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATG
* * * * * *
203472 TACTTCTT-TAGTCAATAGATGGCTTTTGCTTCACATTTTTTAAGG
126 GACTT-TTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* ** * * * * *
203517 CAAACATCCAATTATGACCAATTTTAATGAAAAATTAAAAACAATTGAACTTAAAATCGTTTATA
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
203582 AGATTATAAAACTATTTAAAG-GAAGCAACTTA-TCTTTCTAGGGTATGAGTGAATATAAATAGA
65 AGATTATAAAACCATTTAAAGCG-AGTAAC-TAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* ** * * *
203645 CTTTTCATGTGTATGGATGGCTTTTGGTTCACATTT-TCCAAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCT-TAAGG
* ** * ** * * * * *
203688 AAAACATCCAACGATGATTTGTTTT-ATGAAAAATGAAAAACAATTCAACTTAGAGTCATATAGA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
** * * * * * * *
203752 AGATTCCAAAACCATTTAAAGCTAGTAACAAGACATTCCAAGGCATAAGTGGCTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* *
203817 TTTCTTGTCAATGGATGGCTTTCATTTCATGTTT-TTCAAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTT-AAGG
* * * * *
203858 AAAACATCCAATTATAATATGTTTTAACTAAAAATAAAAAATAATTCAACTCAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAA-AATTCAACTTAAAATCATTTATA
* * * * *
203923 AGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAAGGCATGAGTGCCTATAAATGGACA
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* *
203988 TTTCTTGTCAATGGATGGCTTTCGACTT-ATGTTT-TCTAAGA
130 TTTCTTGTCAATGGATGGCTTT-GA-TTCACGTTTCT-TAAGG
* * * * * * * * * *
204029 AAAACATCTAAGTATAAGCTGTTTGAGCTAAAAATGAAAAATAAAATTTAACCTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAA-AAAATTCAACTTAAAATCATTTA
* ** *
204094 TAAGACTATAAAACCATTTAAAATGAGTAACTAG-CATTTCGAAGGCATTAGTGACTATAAAT-G
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGG
* * * * *** * **
204157 AATTTGTTTTGTCAATGGAAGGCTTTCGCTTCGTATTTCCTAAAC
127 ACTTT-TCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * ** * * *
204202 CAAATATACAATTATGATCTGTTTGAGCCAAACGTGATAAAAAATTTAACTTGAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * ** * *
204267 AGATTTTAAAACCATTTAAAGC-AGCTAACTAGTATTTCAAAGGCACAAGTGACTGTACATGGAC
65 AGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
204331 TTCTCTAGTCAAGGGATGGCTTTCGCTTCACATTTCTTGAGG
129 TTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * *
204373 CAAACATCCAATTATGATATGTTTTAACCAAAAATAAAAAAATATT-AACTTAAAAACATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAA-ATTCAACTTAAAATCATTTATA
* * * * * *
204437 AGACTAT-AAATCATTTAAAGCGAGTAACTAGCCTTTTGAAGGCATGAGTGGCTATCAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *** * * * *
204501 TTT-TCTATCAATTGACAACTTTCGCTTTAC-ATTCTTCAATG
130 TTTCT-TGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* * * * *
204542 TAAACATCGAATTATGATC-GTTGTGTAACAAAAAATGAAAAAAAAATTGAATTTAAAATTATTT
1 CAAACATCCAATTATGATCTGTT-T-TAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTT
* * ** * * *
204606 TTAA-AGTTCTAAAATAATTTAAAGCGAGTAACTA-TGCTTTCAAAAG-ATGAGTGACCATAAAT
62 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCGAAGGCATGAGTGACTATAAAT
* * * * * *
204668 GTACTTTT-TTAGTCAATAGATGGCTTTTACATCATGTTTCTTGAGG
125 GGACTTTTCTT-GTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
204714 AAAACATTCAATTATGATATGTTTTAACTAAAAATAAAAAAATTTCAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * *
204779 GACTAT-AAATCATTTAAAGCAAGTAAATAGCCTTTTGAAGGCATGAGTGGCTATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * * * *
204843 TT-TCTATCAATTGATAGCTTTCGCTTTAC-ATTCTTCAATG
131 TTCT-TGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* ** * * * *
204883 TAAACATTGAATTATGATC-GTTGTGTAACAAAAAATGAAAAAAAAAGTGAATTTAAAATTATAT
1 CAAACATCCAATTATGATCTGTT-T-TAACAAAAAAT--AAAAAAAATTCAACTTAAAATCAT-T
* * * * *
204947 T-TAA-AGTTCT-AAACTCATTTAAAGCGAGTAACTAGGCTTTCAAAAG-ATGAGTGACCATAAA
61 TATAAGA-TTATAAAAC-CATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAA
** * * * *
205008 TATACTTTT-TTAGTCAATGGATAGCTTTTACTTCATGTTTCTTGAGG
124 TGGACTTTTCTT-GTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * ** * * * *
205055 GAAACATCCAATTATGATTTGTTTTAATGAAAAATTAAAACAATTCAACTCAAAATCTTTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
** * * *
205120 GATTATAAAACCATTTAAAGTAAATAACTTGTCTTTC-AAGGGCATAAGTGACTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACT
* * * * ** *
205184 TTTGTTGTCAATGGATAGCTTTTAATTCATGTTTCTCGAGC
130 TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * * *
205225 CAAACATCCAATGATGATTTGTTTTAACTAAAAATAAAAAAAATTCAGCTTAGAATCATCTACAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * **
205290 GATTCTAAAACCATTTAAAGCGAGTAACAAGCCATTCTAAGGCAAAAGTGACTATAAATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
205355 TTCTTGTCAATGGATGGCTTTTGTTTTACGTTTTTTAAGG
131 TTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * *
205395 CTAACATCCAATTATGATATGTTTTAATCAAAAAA-GAAAAGAATTCAACTTAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
** * * * ** * *
205459 AGATTATAAAACCATTTAAAATGAGTAATTGGTATTTTAAAGGCATGAGTGACTATAAATGAACA
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * **
205524 TTTCTTATCAATGGATGGCTTTCACTCTATGTTT-TCTAATA
130 TTTCTTGTCAATGGATGGCTTTGATTC-ACGTTTCT-TAAGG
* * * * * * * * *
205565 CAAATATCCAGTTCTAATCTATTTGAGCCAAAAAGTTAAAAAAAAATT-AACTTAAAATCTTTTA
1 CAAACATCCAATTATGATCTGTTTTA-ACAAAAA-AT-AAAAAAAATTCAACTTAAAATCATTTA
* * * * *
205629 CAAGATTTTAAAACCATTTAAAGCG-GCTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAG
63 TAAGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * * *
205693 ACTTCTCTAGTCAA-GGATAGCTTTCACTTCACATTT-TTAGATG
127 ACTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTA-AGG
* * *
205736 CAAACATCTAATTATGATGTCTTTTAA-ACAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACA-AAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
205800 AG-TCTAT-AAATCTTTTAAAGCAAGTAATTAGCCTTTTC-AAGGCACGAGTGACTATAAATGGA
65 AGAT-TATAAAACCATTTAAAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGA
* ** * * * * *
205862 CTTCTCTTACCAATTGATAGCTTTTATTTCATGTTT-TTCAGTG
128 CTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAG-G
* * ** * * * *
205905 TAAACATCGAATTATGATC-GATGTGCAACAAAAAATGAAAACAAAAGTGAATTTAAAATTATTT
1 CAAACATCCAATTATGATCTG-T-TTTAACAAAAAAT-AAAA-AAAATTCAACTTAAAATCATTT
* * * * ** *
205969 TTAA-AGTTATAAAATCACTTAAAGCGAGTAACTAGGCTTTTAAAGG-ATGAGTGACTATTAATG
62 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATG
* * * *
206032 GACTTCTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGG
126 GACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * *
206077 CAAACATTCAATTATTATCTATTTTAATGAAAAATGAAAAAAAAAACTCAACTTAAAAAT-ATTT
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAA--ATAAAAAAAATTCAACTT-AAAATCATTT
* *** * * * *
206141 ATAAGATTGTAAAACCATTTAAATTAAGTAACTTGTCTTTC-AAGGGTATAAGTGACTATAAATA
62 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATG
* ** * *
206205 GAC-TTTCTTGTCAATAGATGATTTTTGGTTCATGTCTTC-TAAGG
126 GACTTTTCTTGTCAATGGATG-GCTTTGATTCACGT-TTCTTAAGG
* * * * * * **
206249 AAAACATCAAATGATGAT-TTTTTCTAACTAAAAATGAAAAAAGAAATTCAACTTAGAATCAGCT
1 CAAACATCCAATTATGATCTGTTT-TAACAAAAAAT--AAAAA-AAATTCAACTTAAAATCATTT
* * * * * * * * *
206313 ACAAGATTCTAAAACTATTTAAACCTAGTAACAAG-CTATTCCATGGCATAAGTGACTATAAATG
62 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCT-TTCGAAGGCATGAGTGACTATAAATG
* * *
206377 GACTTTTCTTATCAATGGATGGCTTTCATTTCATGTTT-TTCAAGG
126 GACTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTT-AAGG
* * * * *
206422 CAAACATCTAATTATGATATGTTTTAACCAAAAAAGAAAAGAAATTCAACTTAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
206487 AGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAGGGCATAAGTGGCTCTAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * ** * * *
206552 GTTCTTGTCAATGGATGGCTATCACTTTGCTTTTCCTGAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* ***
206593 CAAACATCCAATTATGATCT-ATTTAAGTGAAAAT-AAAAAAA-T-AACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * *
206654 GACTT-TAAAACCATTTAAAACGATTAACTAGTATATCGAAGGCATAAGTGACTATAAATGGACT
66 GA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * *
206718 TCTCTAGTCAAAGGTTGGCTTTCGCTTCACAATTTTTTGAGG
130 TTTCTTGTCAATGGATGGCTTT-GATTCAC-GTTTCTTAAGG
* * * * *
206760 CAAACATCCAATTATGATATGTTTTAACCAAAAATAAAAAAATTTCAACTGAAAATCATTTATAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * **
206825 GATTACAAAACCATTT-AA---AGTAACTTGTCTTTC-AAGGATATTAGTGGTTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGG-CATGAGTGACTATAAATGGACT
** * ** * *
206885 TTTCTTGTCAATGGATAGTTTTTGGTTCATATTT-TCAGAGA
130 TTTCTTGTCAATGGAT-GGCTTTGATTCACGTTTCTTA-AGG
* * * * * * * *
206926 CAAACATCTAATGATGAT-TTTTTTAACCAAAAATAAAAAAAAAATTCAACTTAGAATGATCTAC
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAA-ATAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * *
206990 AAGATTCTAAAACTATTTAAAGTGAGTAACAAGCTATTTC-AAGGCATAAGTGACTATAGATGGA
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAG-TCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * *
207054 CTTTTCTTCTCATTGGATAGCTTTTGTTTCATGTTTTTTTAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * *
207097 CAAACATCCAAATATGATATGTTTTAACCAAAAAATAAAAGAAATTCAACTTAAAACCACTTATA
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * *
207162 AGATTATAAAACCATTTAAAGCGAGTAACTAG-CATTTAGAAGGCATGAGTGACTATTAATGGGC
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGAC
* * ** * * *
207226 TTTTCTTGTCAATAGATGGCTTTCGCTTTGCATTT-TTCGAGC
129 TTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
* * * * * * * * *
207268 CAAATATACAATTATGATCTGTTTGAGCTAAACATGAAAACAAATTTAACTTGAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
207333 AGATTTTCAAACCATTTAAAGCG-GTTAACTTGTATTTCGAAGGTATAAGTGACTATAAATGGAC
65 AGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * **
207397 TTCTCTAGTCAAGGGATGGCTTTTGCTTCATATTTCTTAAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * *
207439 CAAACATCCAATTATGATATGTTTTAACCAAAAATAAAAAAATTTCAA-TTAAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTT-AAAATCATTTATA
* * * * ** *
207503 AGACTAT-AAATCATTTAAAGTGAGTAACTAGCCTTTCGAAGGCATGAGTGGTTATAAATAGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * **
207567 TTT-TCTATCAATTGACAGCTTTTGCTTCAC-TTTCCTTAACA
130 TTTCT-TGTCAATGGATGGC-TTTGATTCACGTTT-CTTAAGG
* ** * * * * * *
207608 TAAACATTGAATTATGATC-GATGTGTAAAAAAAAATGAAAAAAAAGTGAATTTAAAATCATTTT
1 CAAACATCCAATTATGATCTG-T-TTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTA
* * * *
207672 TAA-AGTTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCAAAGG-ATGAGTGACCATAAATGG
63 TAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGG
* * * * *
207735 ACTTCTCTAGTCAATGGATGGCTTTTGCTTCACATTTCTCAAGG
127 ACTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * ***
207779 GAGACATCCAATTATGATCTGTTTTAATGCAAAATGAGAAAAAAATT-AACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-A-AAAAAAATTCAACTTAAAATCATTTAT
* * ** * * * *
207843 AA-AATCTAAAATTATTTAAAG-TATGCAACTTGTCTTTC-AAGGGCATGAGTTACTATAAATGG
64 AAGATTATAAAACCATTTAAAGCGA-GTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGG
* * * * *
207905 ACTTTTCTTATGAATGGATGGCTTTCAGTTCACGTTTCCTAAGA
127 ACTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* ** * * ** * * * * *
207949 AAAACATCCAACGATGAT-TTTTTTTATGAGAAATGAAAAACAAATTCAACTTAGAGTCATCTAG
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAA-AAATTCAACTTAAAATCATTTAT
* * ** * * * * * *
208013 AAGATTCTAAAACTATTTAAAGCGAGTAAGAAGCCATTCCAAGACATAAGTGACTATAAATGAAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * *
208078 TTTTCTTATCAATGGATGGCTTTTATTTCATGTTT-TTCAAGG
129 TTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTT-AAGG
* * * * *
208120 CAAACATCCAATTATGATATGTTTTAACTAAAACATAAAAAAATTTCAACTTAAAGTCATTCATA
1 CAAACATCCAATTATGATCTGTTTTAAC-AAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* *
208185 AGATTATAAAACTATTTAAAACGAGTAACTAG-CATTTCG-AGGCATGAGTG-CTTATAAATGGA
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGAC-TATAAATGGA
* * * * *
208247 -TATTTCTTGTCAATGGATGGTTTTTACCTGACGTTTCCTAAGG
128 CT-TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
208290 CAAACATCCAATTATAAGCTGTTTGAGCCAAAAATAAAAAAAAATT-AACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
** ** * *** ** * *
208354 AGCCTATAAAA-CATCCAATTA-TGA-T--CTA-T-TTTAAC-AAAAAATGA-AAAC-A-AATTC
65 AGATTATAAAACCATTTAA--AGCGAGTAACTAGTCTTT--CGAAGGCATGAGTGACTATAAATG
* * * ** ** * *
208408 AAGTTAAAATCATT-T-ATAT-GATTAC--AAAATCA---TT-TGAAGG
126 GACTT---TTC-TTGTCA-ATGGATGGCTTTGATTCACGTTTCTTAAGG
* * * ** ** * * **
208448 --GA-GT--AATTA-GA-CTTTTAAAGTTATGAATGACTATAAACAAACTT-TTCTTGTCAATTA
1 CAAACATCCAATTATGATCTGTT----TTAACAA--AAAATAAAAAAAATTCAAC-T-T-AA--A
* * * * * * *** * * * * *
208505 ATGACCTTTGCTTCACGTTTTTCAGTGCA---AACATC-A--AATTATGATTTTTGTGTAA-CCA
55 AT--CATTT--AT-AAGATTATAAAACCATTTAA-AGCGAGTAACTA-G-TCTTT-CG-AAGGCA
** * * * * ** ** * * * * ** ** *
208563 AAAATGA-GA-AAAAGGTC-AAT-TT-AAAAT-TAT--TTTTAAAGTTATAAAATCACTTAAAG
110 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT---GAT-TCACGTTTCTTAAGG
* * * * ** * *** * *
208619 C-AA-GT--AATTA-G-GCT-TTTAAAGGATAAGTGGCTATATATGGACTTC-TCTAGTAAATGG
1 CAAACATCCAATTATGATCTGTTTTAA-CA-AA----AAATAAAAAAAATTCAACT--TAAA---
* * * * ** * *
208676 ATTGCTTTTGCTTAATGTTTCTCGAGGCAAA-CATCCAATTA-TGA-T-A-T-GT-TTT--AATG
55 A-T-CATTT--ATAA-GATTAT--A---AAACCATTTAA--AGCGAGTAACTAGTCTTTCGAAGG
* * * * ** ** * * * ** * *
208732 CA-AAATGA-AAAAAATTCAACTTAAAACCATTTATAAGAT-TATAAAACCATTTAAAGTAAGTA
108 CATGAGTGACTATAAA-TGGACTT---TTC--TTGTCA-ATGGAT---GGC-TTT---G--ATTC
208794 AC-TTATCTTTCAAGG
157 ACGTT-TC-TT-AAGG
** ** * * * ** * ** ***** * *
208809 GTATTAGTGACTATAAATGAAATTTTCTTGTC----AATAAATGGCTTTCGA-TT--GA-CATTT
1 CAAACA-T-CCAAT-TATGATCTGTT-TTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTT
* * ** * * * * * *
208866 ACCAAG----GAAAA-CA-TCCAA-CGA-TGATTTGT-TTT--AATGG-A-AAATGA--A-AAAA
62 A-TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAAT
** * * ** ** * * ** * *
208915 AAAATTTAACTTAGAATC-ATTTACAAGATTTTA-AAAC-TAT-TTAAAG
125 GGACTTT-TCTT-G--TCAATGGA-TGGCTTTGATTCACGTTTCTTAAGG
* * * ** * * * ** *** *** * *
208961 CAAGTGATAAGCC-ATTCCAAGGCATAAG---TGACTATAAAT--GGACTTTTCTTGTCAACCGA
1 CAA---A-CATCCAATT---ATG-ATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAA--AA
* * **** * * * **
209020 TGACTTT-T--GTTTCACGT-TTTTCATTGCAAA-C-ATCTAATTATGATCTATTTTAA--CA--
56 TCA-TTTATAAGATT-A--TAAAACCATT-TAAAGCGA-GTAACTA-G-TCT-TTCGAAGGCATG
** * ** * ** ** * *** ** * * * * *
209075 A-AAAAT-TAAA-AAAATTCAACTT-AAAAT-CATTTATAAGATTATAAAGCTAT-TGAAAG
112 AGTGACTATAAATGGACTT-TTCTTGTCAATGGATGGCTTTGA-T-TCACG-TTTCTTAAGG
* * * * ** * * * ***** * * *
209131 CGAGTAAC-TGACATTTCAATGGTATG-AGTGACTATAAAT---GCGCTTCTCTAGTCAATGAAT
1 C-A--AACAT-CCAATT--ATGATCTGTTTTAACAAAAAATAAAAAAAAT-TCAACTTAA--AAT
* * * * * * *** *
209191 GGC-TTTCGCTTCACGTTTCTCCAGACAAACATTCAATTTTGA-T-A-T-GT-TTT--AATTG-A
57 --CATTT---AT-AAGATTAT--A-A-AACCATTTAA-AGCGAGTAACTAGTCTTTCGAA-GGCA
* * ** * * ** **** ** * * * ** *
209247 -GAATTAAAACAATTCAAC--TTAAAATC-ATTTATAAGATTTTA-AAAC-TATT-TAAAGCG
110 TGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-GGCTTTGATTCACGT-TTCTTAAG-G
* * * ** * * * ******* * *
209303 ACTAACTAGT--ATTTA-GAAGGCATG-AGTGACTATAAATAGGCTTTTCTTGTCAA-TGAATGA
1 -CAAAC-A-TCCAATTATG-A-TC-TGTTTTAACAAAAAATA--AAAAAAAT-TCAACTTAA-AA
** * * * * * * * * * * ** * ** * *
209363 TTTTTGTTTCACGTTTTCTGAAGCACA--T-AA-CCAATTACGA-TCTGTTTTAA-CCAAAAATA
56 TCATT-TAT-AAG-ATTATAAAAC-CATTTAAAGCGAGTAACTAGTCT-TTCGAAGGCATGAGTG
** * * ** * * * ** *
209422 AAAACAATTCAACTTAAAATCATT-T--ATAAGAT---TTTAAAAC-CGTTTAAAGTGATGAA-G
116 ACTATAAATGGACTT---TTC-TTGTCAAT-GGATGGCTTTGATTCACGTTT---CT--T-AAGG
* * * * ** ** * * *
209479 TAGACTTTCAAAAGCATGAGTGGCTATAAGTTTTAATGAAAAAGAAAAAAAATTCATCATAAAAT
1 CAAAC-ATC-CAATTATGA-T--C--T--GTTTTAACAAAAAATAAAAAAAATTCAACTTAAAAT
* * * * * *
209544 CATTTATAAGATTGTAAAATCATTTAAAGCTAGTAACTTA-TCTTT-TAAGGGAATGAATGACTA
57 CATTTATAAGATTATAAAACCATTTAAAGCGAGTAAC-TAGTCTTTCGAA-GGCATGAGTGACTA
** * * ***
209607 TAAATATACTTTTATTGTCAATGGATGGCTTTCGCTTCACGTTTCCCCAGG
120 TAAATGGACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * * * *
209658 AAAAACATCAAATGATGATTTGTTTTAACCAAAAATGAAAAAAA-TCAACTTAAATTCATCTATA
1 -CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * ** * * * *
209722 AGATTATAAAACCATTAAAAACGGGTAAGAAGCCATTCCAAGGCATGACTGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * **
209787 TTTATTTTTAATGGATGGCTTTTGATTCACATTTCCCAAGG
130 TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * *
209828 CAAACATCCAATTATGATCTATTTTAACTAGAAATGAAAAAGAAAATT-GACTTAAAATCATGTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAA-AAAATTCAACTTAAAATCATTTA
* * * * * * * *
209892 TAAGATTTTAAAACCATATAAAACGACTAACTAATATTTGGAAGGCATAAGTGACTATAAATGGA
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * ** * * ** *
209957 CTTTTTTTATAAATGGATGATTTTTTGCTTCGCG-TTCCCATGG
128 CTTTTCTTGTCAATGGATG--GCTTTGATTCACGTTTCTTAAGG
* * * * * * * * *
210000 CAAAGAACCAATTATAATATATTTTAACAAAAATTGAAAATAATTCAACTTAAAATCAATTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * *
210065 GATTATAAAACCATTTGAAGGGAGTAACTTA-TCTTTC-AAGGGCATAAGTGACTAT-AATGGA-
66 GATTATAAAACCATTTAAAGCGAGTAAC-TAGTCTTTCGAA-GGCATGAGTGACTATAAATGGAC
* * * * ***
210126 ----CTTGTCAATGGATGCCTTTTGCTTTATGTTTCCCGAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * *
210164 CAAACATCCAATGATGAAT-TTTTTTAACCAAAAATGAAAAAAAATTTCAACTTAAAATCATCTA
1 CAAACATCCAATTATG-ATCTGTTTTAACAAAAAAT-AAAAAAAA-TTCAACTTAAAATCATTTA
** * * * * * *
210228 -AATGATTCCAAAACCATTTAAAGCGGGTAACAAGCCATTCCAAGGCATGAGCGACTATAAATGG
63 TAA-GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGG
* ** **
210292 ACTTTTTCTAT-T-AATGGATGGCTTTTGCTTCATATTTCCCAAGG
127 AC-TTTTCT-TGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * *
210336 CAAACATCCAATTATAATATGTTCTAACCAAAAGTAAAAAAAAGTTTAA-TTCAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAA-TTCAACTT-AAAATCATTTAT
* * * * * *
210400 AAGGTTTTAGAA-CATTAAAAGCGATTAACTAGTCTTTCGAAGGCATGAGCGACTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
210464 TTTTCTTATCAATGGATGACTTTTGCTTCACATTTTTTGAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * *
210506 TAAAAATCCAATTATGATATGTTGTAACAAAAAATGAAAAAAAAATTCAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTAT
* ** * * * * * * *
210571 ACGATTATAAAACCATTGCAAGTGAGTAATTAATATTTCGAAGGTATAAGTGACTATAAATAGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
** * * * * *
210636 TTTTCTTACCAATGGACT-ACTTTTGCTTAATGTTTCTCAAGG
129 TTTTCTTGTCAATGGA-TGGC-TTTGATTCACGTTTCTTAAGG
* * ** * * *
210678 CAAATATCCAATTATGATCTGCTTTAATGAAAAATGAAAAACAATTCAACTAAAAATCGTTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
210743 GGATTATAAAAACGTGTAAAG-GCAGTAAGT--TACCTTCCAAGAGTATGAGTGACTATAAATGG
65 AGATTATAAAACCATTTAAAGCG-AGTAACTAGT-CTTTCGAAG-GCATGAGTGACTATAAATGG
* * *
210805 ACTTTTCATGTCAATGGATGACTTTCGCTTCACGTTT-TTAAAGG
127 ACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTT-AAGG
**
210849 CAAACATCCAATTATGATCTGTTTTAACCCAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * ** ** *
210914 GATTTTAAAA-CAATAAAAGCGAGTAACTAGTCTTTCAAAGGTGTGAGCAACTATAAATAGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* *
210978 TTCTTGTCAATGGATGGCTTTCACTTCACATTT-TCTAAGG
131 TTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCT-TAAGG
* * * * *
211018 TAAACATCTAAATATGATCTATTTTAAC------CAAAAAAAA-TCAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * *
211076 -ATT-TATAAATCATTCAAAGCGAGTAACTAGCCTTTCGAAGGCATGAGAGACTATAAGTAGACT
66 GATTATA-AAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * *
211139 TTACTTGTCAATGGATGGCTTTCACTTCACATTTCCTAAGA
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* ** * *
211180 CAAATATATAATTATGATCTGTTTTAGCAAAAAATAAAAACAAGATTCAACTCAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAA-AA-ATTCAACTTAAAATCATTTAT
* * * * **
211245 AAGATTATGAAACCATTTAAA-TGAGTAACTAG-CATTTCGAAAGCATGAGTGGCTATAAATAAA
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGA
* *
211308 CTTTTCTTGTCAATGGATGGCATTCGTTTCACGTTTC-TAGAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTA-AGG
* * * * *
211351 CAAACATCCAATTATGATATGTTTTAACGAAAAATGAAAAAAAAATCAACTAAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
211416 AGATTATAAAACCATTTAAAGCGAGTTAGTAATATTTTGAAGGCATGAGTGACTATAAATAGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
211481 TTTCTTATCAATGGATGGCTTTCGCTTCATGTTTCTTAAGG
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * *
211522 TAAGCATCCAATGATGATTTGTTTTAACCAAAAATGAAAGAAAAATTCAACTTAAAATCATTCA-
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAA-AAAAATTCAACTTAAAATCATTTAT
* * ** * * * * ** * *
211586 AAG-TGACGAACAAGTATTTCGAAGGTATAAGTGACTATAAATAGACTTTTCTTA-TCA-AAGGA
64 AAGATTA-TAA-AACCA-TT------TA-AAGCGA--GTAACTAGTC-TTTCGAAGGCATGA-G-
* * * * ** * * * **
211648 TGATTTTCACAT-TACGTTTCTCCAGCTAAAT--AT-TCAATT-ATT-ATC-TATT-TTAACA
114 TGACTAT-AAATGGAC-TTT-TCTTG-TCAATGGATGGC-TTTGATTCA-CGT-TTCTTAAGG
* * ** ** * * * ** * **
211703 AAAAAATTAAAATTAAAATC--ATTT-A-TAAAATTACAAAACCATTTAAAGT-AAAT-A-TT-T
1 CAAACA-TCCAATTATGATCTGTTTTAACAAAAAATA-AAAAAAATTCAACTTAAAATCATTTAT
* * * ** * * * * * ** * * *
211760 AGGCTT-TCGAAGGCA-TGAATGACTA-TAAATAGACTTT-GTTTTGTCAATTGA-TGGCT-TCC
64 AAGATTAT-AAAACCATTTAAAG-CGAGTAACTAGTCTTTCG--AAGGC-A-TGAGTGACTAT-A
* ** * ** *** *
211819 ACTTCATGTTTTCTCATGT-AA-ACATCAAATTATGA-T-ATG-TT-TTAA--
122 AATGGA-CTTTTCT--TGTCAATGGAT-GGCTT-TGATTCACGTTTCTTAAGG
* ** ** ** *** * *
211864 -AAAAAT--AAAAAAAAT-TAATTTAA-AATCATTTTTAAAGTTATAAAA-TCAA-TTAAAGTGA
1 CAAACATCCAATTATGATCTGTTTTAACAA--A-AAATAAA---A-AAAATTCAACTTAAAATCA
* * * ** * * * * *
211922 -GTACCAATGCTT-TCAAAGGCA--TAAGTGCCTA-TAAATAGACTTTTCTTGTAAGTGGAT-A-
59 TTTA-TAA-GATTAT-AAAACCATTTAA-AG-CGAGTAACTAGTC-TTTC--G-AAG-GCATGAG
* * * * *** *** * * ***
211980 -G-CT-T--TTGTTA-TATGT-TTCTCAA-GGAAAACATCCAATT-ATG-ATC-TATTT
114 TGACTATAAATG-GACT-TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* ** * ** * ** ** * * *
212028 C-AA-GTGAAATT-T--T-TTTTAAAAAAAAAGGTTCAACGTAAAATTC-ATTTATAA-GATTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAA-AAT-AA-AAAAAATTCAACTTAAAATCATT-T
* * * * * * *
212085 AAAACCATT-T-AAA-G---T-----GAGTAATTAGT-TTGTTGAAGGCATGAATCA-TAGT-AA
62 ATAA-GATTATAAAACCATTTAAAGCGAGTAACTAGTCTT-TCGAAGGCATGAGTGACTA-TAAA
* * * * * *
212136 TGGAACTTTTCTTATCAATTGATGGCTTTCAATTAACCTTTCTTGAGG
124 TGG-ACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
** * * * **
212184 CAAACATCCAAACATGATTTGTTTTGATC-AAAAATGAAAAACAATTTTACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTT-AACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * *
212248 CAGATTATAAAACCATTAAAAGTGAATAACAAGTCTTTCGAAGGTATGAGTGATTATAAATGAAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * **
212313 TTTTCTTGTCTATGAATGGCTTTTGCTTCACATTTCCCAAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * *
212355 AAAACATCCAATTATAATCTATGTTATCAAAAAATGAAAAAAAA-TCAACTTAAAATAATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
212419 TGATTATGAAACCATTGAAA-TGAGTAACTAGACCTTT-AAAGGCATGCATGAGTGGCTACAAAT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAG-TCTTTCGAA-G---GCATGAGTGACTATAAAT
* * * * * * * *
212482 AGACTTTTGTTATCAATAGATGGATTTTGCTTCACATTTCTCAAGG
125 GGACTTTTCTTGTCAATGGATGG-CTTTGATTCACGTTTCTTAAGG
* *
212528 TAAACA-CTCAATTATGATATGTTTT----AAAAA-AAAAAAAATTCAACTTAAAATCATTTATA
1 CAAACATC-CAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * **
212587 AGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAAAGTATGAGTGGCTATATAAATAAA
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGAC--TATAAATGGA
* * * *
212652 CTTTTCTTATCAATGGATGGCTTTTGCTTCACG-TTCATGAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * *
212694 CAGACATCCAATTATGATATATTTTAACAAAAAATGAAACAAAA-TCAACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
212758 AGATTATAAAATCATTTAAATCGAGTACCTAGTATTTTGAAAGCATGAGTGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * ** * *
212823 TCTCTAGTCAATGGATGGCTTTCATTTCATATTTCTTTAGA
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * *
212864 CAAACATTCAATTATGATTTG-TTTAACTAAAAATAAAATAAATTTAACTTAAAATCATTTATAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * *
212928 GACTAT-AAATCATTCAAAGTGAGTAACTAGCCTCTT-AAAGGTATGAGTGACTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCT-TTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * * *
212991 TTTCTTATCTAATGCATAGCTTTCACTACAAGTTATC-CAAGA
130 TTTCTTGTC-AATGGATGGCTTTGA-TTCACGTT-TCTTAAGG
* * * * *
213033 CAAACATCCAATTATGATATGTTTTAGCCAAAAATGAAAAAAAAATTCAATTTCAAATCATTT-T
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTAT
* ** * * * * *
213097 CAAGATTATAAAACCATTAAAAATGAGTAGCTAGGCTTTCAAAGGCATAAGAGACTATAAATGGA
64 -AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * * * *
213162 TTTTTCATCTTAATGGATGGCTTTTACTTCATGTTTCTTGAGG
128 CTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * * *
213205 CAAACATCCAATTATGAACT-CTTAAGACTAAAAAAGAAAAAAATTTTAACTTAAAATTATTTAT
1 CAAACATCCAATTATGATCTGTTTTA-AC-AAAAAATAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * *
213269 AAGATTATAAAACCATATGAACGCGAGTAACTAGGCTTTCGAAGGTATAAGTGACTATAAATAGA
64 AAGATTATAAAACCAT-TTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * ** *
213334 CTTTCCTTATCAATGGATGGCTTTTGCTTCAGGTTTGATGAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* ** * *
213377 CAAACATCCAATTATGATATGTTTTAATGAAAAATGAAAAAAAATTCAACTCAAAATAATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
213442 AGATTATAAAATCATTAAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGGCTATAAGTGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * *
213507 ATTCTTGTTAATACATAGCTTTTGCTTCACATTTCTTAAGG
130 TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * ** * *
213548 CAAACATCTACTTATGATCCGTTTTAATGAAAAATGAAGAAAAATTCAACTTAAAATCATTTGTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * **
213613 AGATTATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAGTGGCTATAAATAAACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * *
213678 TTTCTAGTC--TGCGAATGGCTTTTACTTCATGTTTC-TAGAGG
130 TTTCTTGTCAATG-G-ATGGCTTTGA-TTCACGTTTCTTA-AGG
* * * * *
213719 AAAACATCCAATTATGATTTGTTTTAACTAAAAATAAAAAAAATT-AACTTATAATTATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * ** * *
213783 GACTAT-AAATC-TTTCAAAGCGAGTAACTAACCTTTC-AAGGCATGAGTGACTGTAAGTGGACT
66 GATTATAAAACCATTT-AAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * **
213845 TTTCTTATCAATTGATTGCTTTCAGTTCACCTTGCTCGAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * * *
213886 CAAATATCAAATTATGATCCGTTTTAATC-AAAAGTGAAAAAAGTTCAACTTAAAATCAGTTATA
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * * *
213950 AGATTATAAAATCATTGAAATCGAATAACTAATATTTCAAAGGCATGAATGACTATATATGAACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * *
214015 TTTCTTGTCAATGGATGGTTGTTGCTTCATGTTCCTT---G
130 TTTCTTGTCAATGGATGGCT-TTGATTCACGTTTCTTAAGG
* * * *
214053 ---AGA--CAATTATGATCTAGTTTTAGCTAAAAGTTAA-AAAAAAAAGGTTCAACATAAAATAA
1 CAAACATCCAATTATGATCT-GTTTTAAC-AAAA---AATAAAAAAAA--TTCAACTTAAAATCA
* * * * * *
214112 TTTATAAGATTATAAAACCATTTAAAGTGAGTAAATAGT-TTGTTGAAGGCATGAATGATTGTAA
59 TTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTT-TCGAAGGCATGAGTGACTATAA
* * * * ** * * *
214176 ATGGACTTTTTTTATAAATTGATGGCTTCCAATTAACCTTTCCTAAGG
123 ATGGACTTTTCTTGTCAATGGATGGCTT-TGATTCACGTTTCTTAAGG
* * * * * *
214224 CAAATATCCAATTATGATATG-TTTGACAAAAAAATAAAAAAAACTGAACTTAAAATCATTGATA
1 CAAACATCCAATTATGATCTGTTTTAAC-AAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
214288 AGATTATAAAATCATTGAAAGCGGGTAACTAGTCTTTCGAACGCATAAGTGACTATGAACGAACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * *
214353 TTTCTTGTCTATGGATAGCTTTTCCTTTATGTTTCTCAAGG
130 TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
** * ** * *
214394 CAAGTATCCAATTATGATCTATTTTATGAAAAAATAAAAAAAAAGTTTCAACCTAAAATAATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAA--TTCAACTTAAAATCATTTA
* * * * * * * * * * * ***
214459 TAAGATTATAAAACCACTGAATGTGAGTAAATAGTCCTTCAAAGGTATTAGTGGCTACAAATATT
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * *
214524 CTTTT-TCTGTCAATGGATAGCTTTTACTTCACATTT-TCCAAGA
128 CTTTTCT-TGTCAATGGATGGCTTTGA-TTCACGTTTCT-TAAGG
* * * *
214567 CAAACATCCAATTATGATATGTTTTAATAACAAATTAAAAACAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAA-AAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * ** *
214632 AGGTTATAAAACTATTTAAAGCAAGTAACTAGTATTTTGAAGGCATGGGTGGTTGTATGAATGGA
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGT-G-ACTATAAATGGA
* * ** *
214697 CTTTTCTTGTCAATCGATGGCTTTCGCTTCAAATTTCCTAAGG
128 CTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* **
214740 CAAACATCCAATTATGATCTG-TTTAACTAAAAAT-AAAAAAATAAAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * ** *
214803 GACTAT-AAATCATTCAAAGTGAGTGACTAGCCTTTTAAAGGTATGAGTGACTATAAATGGACCT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA-CT
* ** * *
214867 TTT-TTATTTGATGGATGGCTTTTGCAATAT-A-ATTT-TTGAGAG
130 TTTCTT-GTCAATGGATGGC-TTTG--AT-TCACGTTTCTTAAG-G
* * *
214909 -AAACATCCAATTATGATATGTTTTAGCAAAAAATGAAAAACAATTCAAAC-TAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTC-AACTTAAAATCATTTAT
* * * * * * **
214972 AAGATTATAAAACCATTGAAAGTGAGTAA-TCAGGCTATCGATGGCATAAGTGACTATAAATAAA
64 AAGATTATAAAACCATTTAAAGCGAGTAACT-AGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * *
215036 TTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCTAAGG
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * * * * *
215079 CAAACATCCAACTATGACCTATTTTGACCAAAAATGAAAACAGTTCAACTTAATATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * *
215144 GATTATAAAATCATCTAAAAGC-ATTGAATTAGGCTTTCGAAGGCATGAGTGACTATAAAAT-GA
66 GATTATAAAACCAT-TTAAAGCGAGT-AACTAGTCTTTCGAAGGCATGAGTGACTAT-AAATGGA
* * * * * * *
215207 C-TTTCAGTATCAACGGATAGCTTTTGCTTCATGTTTCTTGAGG
128 CTTTTC-TTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * ** * *
215250 TAAACATCCAATTGTGATCTGTTTTAATGAAAAATGAAAAAAATTCAACTTAAAATAATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * *
215315 GATTATAAAATC-TTTGAAAGCGAGCAACTAGT-TCTTCAAAGGCATGAGTGGCTATAAGTGGAC
66 GATTATAAAACCATTT-AAAGCGAGTAACTAGTCT-TTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
215378 TATTCTTATGAATGGATGGCTTTTGCTTCA-GTGTGCTCAAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGT-TTCTTAAGG
** * * ** * *
215420 TGAACATCCATTTATGATCCGTTTTAATGAAAAATGAAAAAAAACTTCAACTCAAAACCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAA-TTCAACTTAAAATCATTTAT
* ** * * * *
215485 AAGATTATAAAACTATTTGGAGCGAGTAACTAGTATTTCAAAGGCATAAGTGGCTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * ** * *
215550 TTTTCTTTTGAAAGGATGGCTTTGGCTTCTTGTTTCCTGAGG
129 TTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * *
215592 TAAACATCCAATTATAATATGTTTTAACAAACAATGAAAAAATAATTTAACTTAAAATCATTTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAA-AATTCAACTTAAAATCATTTAT
* * * * *
215657 AAGATTATAAAACCATTTAAATCGAGTAGCTAGTATTTCGAAGACATGAGTGACAATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
215722 TTCTCTAGGCAATGGATGGCTTTCACTTCATGTTTCTCAAGG
129 TTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * * *
215764 AAAACATCCAATTATGATATCTTTTAACTAAAAATAAAAAAAAACTCAACTTAAAATTATTGATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * *
215829 AGACTAT-AAATCATTCAAAGTGAGTAACTAGCCTTTC-AAGGGCATGAGTGACTATAAATGGAC
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGAC
* ** * * * * *
215892 TTTTCTTATCAATGGATAACTTTTGCTCCATGTTTCTTGAGA
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
** * * * *** * *
215934 TGAACATTCAATTATGATCTGTTTTACCTAAAAAAATTTTTTTTAAAATTGTTCAACGTAAAATA
1 CAAACATCCAATTATGATCTGTTTTAAC--AAAAAA------TAAAAAAAATTCAACTTAAAATC
** * * * * ** * * * *
215999 ATTTATAAGATTATAAAATTATTGT-AAGTGCGTAATTAAT-TTGTTAAAAGCATGAATGATTGT
58 ATTTATAAGATTATAAAACCATT-TAAAGCGAGTAACTAGTCTT-TCGAAGGCATGAGTGACTAT
* * * * * * **
216062 AAATAGACTTTTCTTATTAATTGATGGCTTTCGATTTACCTTTCCAAAGG
121 AAATGGACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * *
216112 CAAACATCCAATTCTGATATGTTTTGACCAAAAATAAAAAAAAAATTCAA-TCTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTT-AACAAAAA-ATAAAAAAAATTCAACT-TAAAATCATTTA
* * * * * *
216176 TAAGATTATAAAACCATTTGATGCTAGTAACTAGTCTTTCAAATGCATGAGTGACTGTAAATGGA
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA
* * * * ** ** *
216241 CTTTTCTTATCCATGGATGTCTTTTGCTTCATATTTCCCAAGA
128 CTTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * *
216284 AAAACATCCAATTATGATATGTTTTACCAAGAAATAAAAAAAGACATTCAACTTAAAATAATTTT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAA-A-ATTCAACTTAAAATCATTTA
* * ** * * *
216349 TAAGATTATGAAACCATTGAAAGTTAGTAACTAGTCCTTT-AAAGGCATGAGTGGCTACAAATGG
63 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCGAAGGCATGAGTGACTATAAATGG
* * * **
216413 ACTTTT-TCTATCAATAGATGGCTTTTGATTCACATTTCCCAAGG
127 ACTTTTCT-TGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * ** * *
216457 CAATCATCCAATTATGATCTATTTTAGTAAAAAATGAAAAAAACATTCATCTTAAAATAATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAA-ATTCAACTTAAAATCATTTAT
* * * * * * * * *
216522 ATGATTATAAAACTATTTAAAGCAAGTAACTACTATTTTGAAAGCATGAGTGGCTATATGAATCG
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATA--AATGG
* * * * * * *
216587 ACTTTTCTTCTCAGTGGATGCCTTTCGCTTCACATTTCCTAAGA
127 ACTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * *
216631 CAAACATCTAATTATGATCTGTTTTAATAAAAAATAAAAAAAAATT-AACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * *
216695 AGATTATCAAACCATTTAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * ** * * *
216760 TCTT-TAGTCAAGGGATAGTTTTTGCTTCATGTTTCTTGAGG
130 T-TTCTTGTCAATGGAT-GGCTTTGATTCACGTTTCTTAAGG
* * * * * * * *
216801 TAAACATCAAATTATGATATATTTTAACTAAATATAAAAAAAAATCAACTTAAAATTATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * * *
216866 GACTAT-AAATCATTCAAAGCAAGTTACTAATCTTTTGAATAG-ATGAGTGACTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACT
* * * * ** *
216929 TTTCTTATCACTAGATGGCTTTCGCTTCATATTTCTTGAGG
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * *
216970 CAAATATCCAATTATGATCTGTTTTAATAACAAATGAAAAAAAACTCAA-TTTAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
217034 AGTTTATAAAACCATTTAAAGCAAGTAACTAGTATGTCGACGGCATGAGTGGCTATAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * *
217099 TCTCTTGTCAATAGATGGCTTTCACTTCACATCTCCTAAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * * * *
217140 GAAACATTCAATTATAATCTGTTTGAACTAAAAATGAAAAACAATTTAACTTAATATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * *
217205 AGATTTTAAAACCATTTAAAGCG-GTTAACTAG-CATTTAGAAGGCATGAGTGACAATAAATGGA
65 AGATTATAAAACCATTTAAAGCGAG-TAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGA
* ** *** * * * *
217268 TTTTTCTTCCCAATGGATTTTTTTTGCTTCATGTTTCCCT-ATG
128 CTTTTCTTGTCAATGGA-TGGCTTTGATTCACGTTT-CTTAAGG
* * * *
217311 TAAACATCCAATTATGATGTATTTTAACAAAAAATGAAAAAAAATTCAAGTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* ** ** * * * * * **
217376 AGATTATAAAACTATTTGTATTGAGTAATTAGGCTTTCAAAAGCATGAATGACTATCTATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
217441 TTTCTTATCAATTGATGGTTTTTGCTTCACATTT-TTCAGTA
130 TTTCTTGTCAATGGATGG-CTTTGATTCACGTTTCTTAAG-G
* * * * * * *
217482 TAAACATCAAATTATGATCTATGTGTAACAAAAAAAAGAAAAAAGAAATCAATTTAAAATCATTT
1 CAAACATCCAATTATGATCTGT-TTTAAC--AAAAAATAAAAAA-AATTCAACTTAAAATCATTT
* * * * * * *
217547 TTAA-AGTTAGAAAATCACTTAAAGCGAGTAACTAGGCTTTC-AATGG-ATGAATGACAATAAAT
62 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAAT
* * * * * * *
217609 AGACTTCTCTAGTCAATGGATGGATTTCACTTCACGTTTCTCAAAG
125 GGACTTTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* ** *
217655 CAAACATCCAATTATGATATGTTTTAATGAAAAAT-GAAAAAATTCAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* ** * * * **
217719 GATTATAAAACTATTTAAAGTAAGTAACTTGTCTTTC-AAGGGCATCAATGGTTATAAATGGACT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACT
* * ** ** *
217783 TTTCTTGTCAATGAATGGCTTTCGGTTCATATTTCCCAAGA
130 TTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * * *
217824 AAAATATCC-ATTGATGATTTATTTTAACTAAAAATGAAAAAAAAAATTC-ACTTAGAATCATCT
1 CAAACATCCAATT-ATGATCTGTTTTAAC-AAAAA--ATAAAAAAAATTCAACTTAAAATCATTT
* * * * * * * * * *
217887 ATATGATTCTAAAACCATTTAAAGTGAGTAACAAGCCATTCCAGGGTAT-ACGTGACTATAAATA
62 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGA-GTGACTATAAATG
* * * *
217951 GA-TTTTTTTCGTCAATGGATGGCTTTCATTTCACCTTTTTTAAGG
126 GACTTTTCTT-GTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * *
217996 CAAACATCCAATTATGATATGTTTTAGCCAAAAAAGAAAAGAAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTA-ACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * ** ** *
218061 AGATTATAAAATCATTTAAAGCTAGTAACTAGTATTTTAAAGGCATGAGTGGGTACAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* ** * * ** *
218126 TTTGTTGTTGATGGATGGCTTTCACATCGTGTTTCCTAAGG
130 TTTCTTGTCAATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
218167 CAAGCATCCAATTATGATCTATTTAAACCAAAAATAAAAAAAA-T-AACTTAAAATCGTTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * *
218230 GATTTTAAAAGCATTTAAAGCG-GTTAACTAG-CATTTAGAAGGTATGAGTGACTATAAATGGAC
66 GATTATAAAACCATTTAAAGCGAG-TAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
218293 TTTTCTTATCAATGAATGTCTTTTGCTTCACATTTCTTGAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * * * ****
218335 CAAACATCCAATTATCATTTATTTTAACAAAAAATGAAAAAAGTTTGTGTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * ** *
218400 GATTATAAATCTATTTGAAGCGAGTAATTAGACTTTCAAAGATATGAGTGACTATAGATAGG-CT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAAT-GGACT
* * * * * * * *
218464 TTTTTTATAAATTGATGCCTTTTGCTTCATG-TTCTTCAGTG
130 TTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAG-G
* * * * * * * * * * *
218505 TAAACATCAAATTATGATTTATGTGTAACCAAAAATGAAAAAAAGTCAATTTAAAATTATTTTTA
1 CAAACATCCAATTATGATCTGT-TTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * *
218570 A-AGTTATAAAATCATTTAAAGCAAGTAACTAGGCTTTCAAAGG-ATGAGTGACGATAAATGGAC
65 AGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* ** * * **
218633 TTCTCTAATCAATGGATGGCATTTGCTTCAC-TGTCCCAAGG
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTTAAGG
* * * ** * *
218674 TAAATATCCAATTATGATATGTTTTAATGAAAAATGAATAAAAATTCAACTTAAAACCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
** * *
218739 AGATTATAAAACCATTTAGAA-TAAGTAACTTGTCTTTC-AAGGGCATGAGTGACCATAAATGGA
65 AGATTATAAAACCATTTA-AAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGA
* * *
218802 CTTTTCTTATCAATGGATGGCTTTCGGTTCACGTTTCCTAAGG
128 CTTTTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * * *
218845 CAAACATCCAATGATAATTTGTTTTAACCAAAAATGGAAAAAAAATTCAACTTAGAATCATGTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * * * *
218910 AAGATTCTAAAATCATTTAAAGCGAGTGACAAGCCATTCCAAGGCATAAGTGACCATAAATAGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
218975 TTTTTTTGTTAGTGGATGGCTTTTGTTTCATGTTTTTTGAA-G
129 TTTTCTTGTCAATGGATGGC-TTTGATTCACGTTTCTT-AAGG
* ** * * * *
219017 CAAAGATCCAATTATTTTCTATTTTAACCATAAAT-AAAAAAATTTAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * ** * * * *
219081 GACTAT-AAATCATTCAAAGTAAATAGCTAGCCTTTCGAAGGCATGAGTGACTATAAATAGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * *
219145 TTCTTATCAATGGATGGCTTTCGCTTCATGTTT-TTAAGG
131 TTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * * ***
219184 TAAAAATCTAATTATAATATGTTTTAACCAAAAATGAAAATAAAA-AGGACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAA-AAAATTCAACTTAAAATCATTTAT
* * * * *
219248 AAGATTATAAAACCATTGAAAGCGAATAACTAGTATTTTGAAGGCATGCGTGACTATAAATGGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
219313 TTCTCTAG-CAAATGGATGGCTTTCACTTCATGCTTCTGAAGG
129 TTTTCTTGTC-AATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * *
219355 CAAACATCCAATTATGATCTATTTTAACCAATAATAAAAAAAAATTCAACTCAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * *
219420 AGAGTAT-AAATCATTCAAAACGAGTAACTAGCCTCTAGAAGGCAAGAGTGACTACAAATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * * ** * * *
219484 TCTCTAGTCAAGGGATGGATTTCTTGTCATGTTTCTCAAGA
130 TTTCTTGTCAATGGATGGCTTTGAT-TCACGTTTCTTAAGG
* * * * * * *
219525 CAAACATCCAATTATGATGTCTTTTAACTAAAAAGAAAAAAAAATCAACTTAAAATCACTTAAAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * *
219590 GAGTAT-AAATCATTCAAAGCAAGTAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * * *
219654 TTCTTGTCACTGGTTGGCTTTCGCTTCACATTTCCTAAGG
131 TTCTTGTCAATGGATGGCTTT-GATTCACGTTTCTTAAGG
* * * * * *
219694 TAAATATCCAACTT-TGATCTGTTTTAAGAACAAATGAAAAAAAATTCCACTTAAAATAATTTAT
1 CAAACATCCAA-TTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * * * *
219758 AACATTATAAAACAATTTAAAGAGAGTAATTAGTCTTTTGAAGGAATGAATGATTGTAAATAGAC
64 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGAC
* ** * ** *
219823 TTTTCTTGTCAATTGATAGTTTTTGATTCATGTTTCTCGAGA
129 TTTTCTTGTCAATGGAT-GGCTTTGATTCACGTTTCTTAAGG
*
219865 CAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
219930 ATATTATAAAACTATTGAAAGC-ATGTAACTAGACTTT-GAAAGGTATGAGTGATTATAAATGGA
65 AGATTATAAAACCATTTAAAGCGA-GTAACTAGTCTTTCG-AAGGCATGAGTGACTATAAATGGA
* * ** * *
219993 ATTTTCTTAT-ACATGGATACCTTTCACTTCACGTGTCTTAAGG
128 CTTTTCTTGTCA-ATGGATGGCTTTGA-TTCACGTTTCTTAAGG
* * * * * *
220036 TAAACATCCAATTATGATTTGTTTTATCAAAAAGTGAAAAAAAATTCAACTTGAAATAATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
220101 AGATTATAAAACCATTGAAAGGGAGTAATTAGTCTTTCAAATGCGTGAGTGTCTATACATGGACT
65 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT
* * * ** * *
220166 TTTATTGTTAATGGATGGTTTTTTCTTCATGATTTC-TCAGG
130 TTTCTTGTCAATGGATGG-CTTTGATTCACG-TTTCTTAAGG
* * * * *
220207 CAAACATCCAATTATTATATGCTTTAACCACAAATAAAAAAAA-TCAACTTAAAATCATTTATAA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * * ** * *
220271 GACTAT-AAATCATGTAAAGTGAGTAACAAGCCTTTCAAAGATATGAGTGACTCTATATGGACTT
66 GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
* * * *
220335 TTCTTATCAATGGATGGCTTTTGCTTTC-C-TTTTTTCAATG
131 TTCTTGTCAATGGATGGC-TTTG-ATTCACGTTTCTT-AAGG
* * *
220375 AAAACATCCAATTATGATCTGCTTTAACCAAAAATGAAAAAAAATTCAAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAATTCAAC
220425 CATTTAAAGT
Statistics
Matches: 16385, Mismatches: 4057, Indels: 2126
0.73 0.18 0.09
Matches are distributed among these distances:
145 3 0.00
146 4 0.00
147 1 0.00
148 3 0.00
149 2 0.00
150 7 0.00
151 9 0.00
152 16 0.00
153 16 0.00
154 6 0.00
155 10 0.00
156 23 0.00
157 15 0.00
158 14 0.00
159 17 0.00
160 27 0.00
161 42 0.00
162 190 0.01
163 69 0.00
164 80 0.00
165 58 0.00
166 261 0.02
167 449 0.03
168 1178 0.07
169 1995 0.12
170 3343 0.20
171 4239 0.26
172 2694 0.16
173 978 0.06
174 200 0.01
175 27 0.00
176 23 0.00
177 63 0.00
178 114 0.01
179 33 0.00
180 33 0.00
181 40 0.00
182 22 0.00
183 20 0.00
184 16 0.00
185 2 0.00
186 4 0.00
187 8 0.00
188 4 0.00
189 3 0.00
190 3 0.00
191 12 0.00
193 1 0.00
196 2 0.00
197 1 0.00
198 1 0.00
199 1 0.00
200 2 0.00
201 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (169 bp):
CAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT
TTCTTGTCAATGGATGGCTTTGATTCACGTTTCTTAAGG
Found at i:200133 original size:341 final size:341
Alignment explanation
Indices: 198749--220424 Score: 8904
Period size: 341 Copynumber: 63.1 Consensus size: 341
198739 TTTTTTGAGA
* * * * * *
198749 CAAACATCCAATCATGATATGTTTTAGCCAAAAATGAAAAAAAAAGCTCAAATTAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATG-AAAAAAAA-TTCAACTTAAAATCATTTA
* * * ** * * * * **
198814 TAAGATTATAAAACTATTTAAAGTGAGTAATTAGTCTTTTGAA-GCATAAATGATTGTAAATCAA
64 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGA
* * * * ** * *
198878 CTTTTCTTATCAATTGATGGCTTTCGATTCACATTT-TTCAAGGCAAACATCCAATTATGGTCTA
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTG
* * * * **
198942 TTTT--TAAAAAATGAAAAAAAATCTACTTAAAATTATTTATAAGATTATAAAACCATTTAAATT
193 TTTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * * * *
199005 GAGCAACTAGTATTTCAAAGGCATGAATGGCTATAAATGGACTTTTCTAGTTAATGGATGGATTT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
** *
199070 CACTTCACGTTT-CTCAAGG
323 CACTTTTCATTTCCT-AAGG
* * * * *
199089 CAAACATCCAATTATGTTCTG-TTTAACTAAACATAAAAAAAAATTCAACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * ** ** * * *
199153 AGAATAT-AAATCATCCAAAATGAGTAATTAGCCTTTCGAAGGCATGAGTGACTATAAATGGAC-
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * ***
199216 TGTGTTGTCAATGGATGGC-TTT-CATATCATGTTTCTTAAGACAAACATCTAGTTATG-TCCCA
131 TTTCTTGTCAATGGATGGCTTTTGC-T-TCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * ** * * * *
199278 TTTAA-CCAAAATGAAAAAAAAAT-AGCTTAAAATCATCGATTATATTTTAAAACCATTTACAGC
194 TTTAATCAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * * * ** **
199341 GACTGACTAGTATGTGGAAGGTATAAGTGACTATAAATGGACTTTTCTTACCAATGGATGATTTT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
199406 CAC--TTCATGCTTCCCT-AGG
323 CACTTTTCAT--TT-CCTAAGG
*
199425 CAAACATCCAATTATGATCTATTTTAACAAAAAAT-ATAAAAAAA-TCAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGA-AAAAAAATTCAACTTAAAATCATTTAT
* ** * * * * *
199488 GAGATTATAAATTCATTTAAATCGAGTAACTAGTATTTCGAACGCATGAGTGACTATATATGGA-
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * ** * * * *
199552 TTTCTCTAGTCAATGGATGGCTATCACTTCACAT-TTTC-AAAGACAAATATCTAATTATGAT-T
130 TTT-TCTTGTCAATGGATGGCTTTTGCTT--CATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * *
199614 TTTGTTCA-CAAAAAATGAATAAAAGGTTCAACTTAAAATCATTTATAAGATTATAAAACCATTT
192 GTT-TTAATC-AAAAATGAA-AAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTT
* * * * * * * * * *
199678 AAAGTGAGTAATTAGTCTTCCGAAGGCCTAAATGAGTGTAAATGGACTATTCTTGTCAATTGATA
253 AAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT-
* *** * *
199743 GGCTTTGA-TGCACCTTTCTTAAGG
317 GGCTTTCACTTTTCATTTCCTAAGG
* *
199767 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAACAAATTTCAACTTAAAATTATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAA-AAAATTCAACTTAAAATCATTTAT
* * * * *
199831 AAGATTATAAAACCATTGAAAGCAAGTAACTAGGCTTTCAAAGGCATGAGTGACAATAAATAGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** *
199896 TTTTCTTGTTAATGGATTGCTTCTGCTTCATGTTTCCCAAGGCAAGCATCCAATTATGATCTGTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * *
199961 TTGATCAAAAATGAAAAAAATTCAACTTAAAGTCATTTATAAGACTT-TAAAACCATTGAAAGCG
195 TTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCG
* * * * *
200025 AGTAACTAGGCTTTCGAAGGTATGAGTAACTATAAATGGACTTTTTTTGTTAATGGATGGCTTTC
259 AGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTC
200090 ACTTTTCATTTCCTAAGG
324 ACTTTTCATTTCCTAAGG
* *
200108 CAAACATCCAATTATGATATGTTTTAACAAAAAAT-AAAAGAAAATTCAACTTAAAATCATTTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAA-AAAATTCAACTTAAAATCATTTAT
** * *** * **
200172 AAGATTATAAAACC-TTTAAATTGAGTAACTAGTATTTTGGAGGCATGAGTGA-TGTAAATACAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * ** *
200235 TTATCTAGTTAATGGATGACTTCTACTTCATGTTTCTTAAGGAAAATATTTAATTATGATCTATT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * **
200300 TTAACCAAAATTGAAAGAAAATTCAATTTAAAATCATTTATAAGATCATAATATCATTTAAAGAA
195 TTAATCAAAAATGAAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* ** * * ** * *
200365 AGTAATTAACCTTTCGAAGGCATAAG-GTACTATAAATAGAC-TTTCTCATCAGTAGATGGCTTT
259 AGTAACTAGTCTTTCGAAGGCATGAGTG-ACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* ** * *
200428 --CTCTTCATGTTTTTTGAGA
323 CACTTTTCA--TTTCCTAAGG
* * *
200447 CAAAAATCAAATTATGATCTATTTTAACAAAAAAT-AAAAAACAA-TCAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAA-AATTCAACTTAAAATCATTTAT
* * * * * * *
200510 AGGATTATAAATCCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTAACTATAAATGGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** *
200575 TTCTCTAGTCAATGGATAGCTTTCT-CTTCACATTT-TTCAAGGCAAACATCCAATTATGTTCTG
130 TTTTCTTGTCAATGGATGGCTTT-TGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTG
* * * * ** *
200638 TTTTAA-CTAAAAATTAAAAAAAATT-AACTTAAAATCATTCACAAGATTGT-AAATGATTCAAA
193 TTTTAATC-AAAAA-TGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
** * * * * * *
200700 ATGAGTAACTAGCCTTTTGAAGGTATAAGTGACTATAAATGGACTTTTCTTGTCAATGAATGACT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * *
200765 TTC-C-CTTCATGTTTCTCAAGA
321 TTCACTTTTCAT-TTCCT-AAGG
* * *
200786 AAAATATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAAATTGAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTAT
* * ** * * * *
200851 AAGATTTTAAAA-CATTGAAAGTTAGTAACTAGTATTTAAAAGGCATGAGTAACTATAAATGGGC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * ** * * *
200915 TTTTCTTATCAATAGAT-AATTTTCACTTTACAT-TTT-TTGAGGCAAACATCTAATTATGATCT
130 TTTTCTTGTCAATGGATGGCTTTT-GC-TT-CATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * *
200977 ATTTTAA-CAAAAGAAT-AAAAAAA-TCAACTTAAAATCATTTATAAAATTACAAAACCATTTGA
192 GTTTTAATC-AAA-AATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * * * **
201039 AGCGAGTAATTAGGCCTTCAAAGGCATAAATGACTATAAATGGAATTTTCTTGTCAATAAATGGC
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
** * **
201104 TTTCACTTGACGTTTTCC-AACA
320 TTTCACTTTTC-ATTTCCTAAGG
* * * * * * * *
201126 TAAATATCAAATTATGATATGTGTTAACAAAAAAT--AAAAAAA-TCAATTTAAAATTATTTTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * * *
201188 A-AGTTACAAAATCACTTAAAACGAGTAACAAGGCTTTCAAAGGCATTAATGACTATTAATGGAC
66 AGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** ** * * *
201252 TTTTGTT-ACAAATGAATGGCTTTCACTTCACATTTC-TAGAGGTAAACATCAAATTATGATATG
130 TTTTCTTGTC-AATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTG
* * * * *
201315 TTGTAGTGAAAAATGAAAAGAAATTCAACTCT-AAACCATTTATAAGATTATAAAACTATTTAAA
193 TTTTAATCAAAAATGAAAA-AAATTCAACT-TAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * ** * * * *
201379 GTGAGTAATTAATATTTTGAAGATATAAGTGGCTATAAATGGACTTTTCTTGTCAATAGATAGCT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
** ** *
201444 TTTGCTTCACATTTCTTAAGG
321 TTCACTTTTCATTTCCTAAGG
* * * * *
201465 TC-AACATCCAATTATGATCTATTTGAGCCAAAAAT-AAAAAATAATTTAACTTAAAATCATTTA
1 -CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAA-AATTCAACTTAAAATCATTTA
* ** * * * ** *
201528 TAAGATTTTAAAACCATTTAAAATGACTAACTAGTATTTCGAAGGCATGAGTGACTGCAAATGAA
64 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGA
** * ** * * *
201593 CTTTTCTTGTGGAGGGATGATTTTTGCTTCATGTTTCATAAGGAAAACATCCAATTATGATCTAT
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * * * *
201658 TTTAA-CAAAAAATAAAAAAAAATTTAAGTTAAAAATTATTTACATGATTATAAAACCA-TTAGA
194 TTTAATC-AAAAAT-GAAAAAAATTCAACTT-AAAATCATTTATAAGATTATAAAACCATTTA-A
* * ** * * * * *
201721 AGCGAGTAATTAGACTTTTAAAGGCATAAATGACTATAAATGAACTTTTCTTGTCAATTGATGAC
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
** * ** *
201786 TTTTGCTTCATGTTTTCC-AATG
320 TTTCACTT-TTCATTTCCTAAGG
* * * * * * *
201808 CAAACATCAAATTATGATCTATGTGTAACAAAAAATGAAAAAAAAAGTGAACTTAAAACCATTTT
1 CAAACATCCAATTATGATCTGT-TTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTA
* ** * * *
201873 TAAGGTTATAAAATAACTTAAAGCGAGTAACTAGGC-TTCTAAAGG-ATGAGTGTCTATAAATGG
64 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC-AAAGGCATGAGTGACTATAAATGG
* ** * ** * *
201936 ACTTTTCTAGTCAATGGATGGCTTTTGCTTCACATTTCTCAAGGTGAACATCCAATTATGATTTT
128 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* *
202001 TTTTAATGAAAAATGAAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAT
193 TTTTAATCAAAAATG--AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA-
** * * * * * * *
202066 A-TAAGTAACTTGTCTTTC-AAGGGCATAAGTGAGTATAAATGGACTTTTTTTGTTAATGAATGA
255 AGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
**
202129 CTTT--CGGTTCATGTTTCTCT-AGG
319 CTTTCACTTTTCA--TTTC-CTAAGG
* ** * *** * * *
202152 CAAACATTCAACAATGATTTGTTTTATTGAAAAAT-AAAAAAAAATCAACTTAGAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * ** * *
202216 AGATTCTAAAATCATTTAAAGTGAGTAACAAGCCATTCCAAGATATAAATGACTATAAATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* *** * * *
202281 TTTCTTGTAAATGGATGGCTTTCATTTCATGTTT-TTCACGGCAAGCATCCAATTATGATATGTT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTGTT
* * *
202345 TTAACCAAAAAAGAAAAGAAATTCAA-TGTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
195 TTAATCAAAAATGAAAA-AAATTCAACT-TAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * *
202409 GAATAACTAGTATTTCGAAGGCATGAATGTCTATAAATGGACTTTTCTTGTCAATGGATAGCTAT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* *
202474 AACTTTGCATTTCCTAAGG
323 CACTTTTCATTTCCTAAGG
* * * * *
202493 CGAACATCCAATTATGATCTGTTTGAGCTAAAAAT-AAAAATAAAGTT-AACTTTAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAA-AAA-TTCAACTTAAAATCATTTA
* * * * *
202556 TAAGATTTTAAAACCATTTAAAACG-GCTAACTAGTATTT-AGAAGTCATGAGTGACTATAAATA
64 TAAGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCA-AAGGCATGAGTGACTATAAATG
* * *** * * * * *
202619 GACTTTTTTTATCAATGGATCATTTTTACTTTACGTTTCATGAGGCAAACATCCAATTATGATCT
127 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * * *
202684 ATTTTAA-CTAAAAT-AAAAAAACTTCAAGTTAAAATCATTTATATGATTATAAAACCATTTGAA
192 GTTTTAATCAAAAATGAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * ** * * * * * *
202747 GCAAGTAATTAGGCTTTTAAAGGCATGAATAACCATAAATGGACTTTTGTTGTCAATTGATGACT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * *
202812 TTCACTTTACGTTT-TTTAGTG
321 TTCACTTTTCATTTCCTAAG-G
* * * * *
202833 TAAACATCAAATTATGATCTGTGTGTAACAAAAAATGAAAAAAAAGTCAATTTAAAATCAGTTT-
1 CAAACATCCAATTATGATCTGT-TTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCA-TTTA
* * * * * * * *
202897 TAA-AGTTATAAAATCACTTAAAGCGAGTAACTAGTATTTTAAAAGCGTGAGTGGCTATAAATAG
64 TAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * * **
202961 A-TATTT-TTAATCAATGGATGACTTTTACTTCACT-TTTCCTATTGCAAACATCCAATTATGAT
128 ACT-TTTCTT-GTCAATGGATGGCTTTTGCTTCA-TGTTTCTTAAGGCAAACATCCAATTATGAT
* * * * * *
203023 CTATTTGAGTTAAAAATGAAAAAAAAAGTT-AACTTAAAATCATTTATAAGATTTTAAAACTATT
190 CTGTTTTAATCAAAAATG--AAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATT
* * * *
203087 TAAGGCG-GTTAACTAG-CATTT-GAAAGGCATGACTAACTATAAATGGACTTTTCTTATCAATG
252 TAAAGCGAG-TAACTAGTC-TTTCG-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
** ** ** *
203149 GATGATTTTTGCTTCACATTT-CTCGAGG
314 GATGGCTTTCACTTTTCATTTCCT-AAGG
* * * * * * *
203177 AAAACATCCAATTATAATGTATTTTAACAAAAAATG-AAAACAAGTCAAGTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
203241 TGATTATAAAACCATTTGAAGCGAGTAATTAGGCTTTCAAAGGAATAAATGACTATAAATGGA-T
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
** * * * * * * * * *
203305 ATTTCTCATCAATCGATGACTTTCGCTTAACGTTT-TTCTATGTAAACATCAAATTATGATCAAT
131 -TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATC--T
* * * * * *
203369 G-TGTAA-CAAAAAATGAAACAAAAGTT-AATTTAAAATTATTT-TAA-AGTAATAAAATCACTT
192 GTTTTAATC-AAAAATGAAA-AAAA-TTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTT
* * * * *
203429 AAAGCGAGTAACTAGGCTTTCAAAGG-ATGAGTGACTATAAATGTACTTCTT-TAGTCAATAGAT
253 AAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTT-TTCTTGTCAATGGAT
** ** **
203492 GGCTTTTGCTTCACATTTTTTAAGG
317 GGCTTTCACTTTTCATTTCCTAAGG
* ** ** * * * *
203517 CAAACATCCAATTATGACCAATTTTAATGAAAAATTAAAAACAATTGAACTTAAAATCGTTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
203582 AGATTATAAAACTATTTAAAG-GAAGCAACTTA-TCTTTCTAGGGTATGAGTGAATATAAATAGA
66 AGATTATAAAACCATTTAAAGCG-AGTAAC-TAGTCTTTCAAAGGCATGAGTGACTATAAATGGA
* ** * * * ** *
203645 CTTTTCATGTGTATGGATGGCTTTTGGTTCACAT-TTTC-CAAGGAAAACATCCAACGATGATTT
129 CTTTTCTTGTCAATGGATGGCTTTTGCTT--CATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * * * **
203708 GTTTT-ATGAAAAATGAAAAACAATTCAACTTAGAGTCATATAGAAGATTCCAAAACCATTTAAA
192 GTTTTAATCAAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * * *
203772 GCTAGTAACAAGACATTCCAAGGCATAAGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGCT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
**
203837 TTCA--TTTCATGTTTTTCAAGG
321 TTCACTTTTCAT-TTCCT-AAGG
* * * * *
203858 AAAACATCCAATTATAATATGTTTTAACTAAAAAT-AAAAAATAATTCAACTCAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAA-AATTCAACTTAAAATCATTTAT
* * ** *
203922 AAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAAGGCATGAGTGCCTATAAATGGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * ** * * * *
203987 ATTTCTTGTCAATGGATGGCTTTCGACTT-ATGTTT-TCTAAGAAAAACATCTAAGTATAAGCTG
130 TTTTCTTGTCAATGGATGGCTTTTG-CTTCATGTTTCT-TAAGGCAAACATCCAATTATGATCTG
* * * * *
204050 -TTTGAGCTAAAAATGAAAAATAAAATTTAACCTAAAATCATTTATAAGACTATAAAACCATTTA
193 TTTTAATC-AAAAATG--AAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTA
** * * * *
204114 AAATGAGTAACTAG-CATTTCGAAGGCATTAGTGACTATAAAT-GAATTTGTTTTGTCAATGGAA
254 AAGCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTT-TCTTGTCAATGGAT
* * **
204177 GGCTTTCGCTTCGT-ATTTCCTAAAC
317 GGCTTTCACTT-TTCATTTCCTAAGG
* * * * * ** * * *
204202 CAAATATACAATTATGATCTGTTTGAGCCAAACGTGATAAAAAATTTAACTTGAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * ** * *
204267 AGATTTTAAAACCATTTAAAGC-AGCTAACTAGTATTTCAAAGGCACAAGTGACTGTACATGGAC
66 AGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * ** * *
204331 TTCTCTAGTCAAGGGATGGCTTTCGCTTCACATTTCTTGAGGCAAACATCCAATTATGATATGTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * *
204396 TTAACCAAAAAT-AAAAAAATATTAACTTAAAAACATTTATAAGACTAT-AAATCATTTAAAGCG
195 TTAATCAAAAATGAAAAAAAT-TCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* * * * * * ***
204459 AGTAACTAGCCTTTTGAAGGCATGAGTGGCTATCAATGGACTTTT-TCTATCAATTGACAACTTT
259 AGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCTTT
* * * *
204523 CGCTTTACA-TTCTTCAATG
323 CACTTTTCATTTCCT-AAGG
* * * * *
204542 TAAACATCGAATTATGATC-GTTGTGTAACAAAAAATGAAAAAAAAATTGAATTTAAAATTATTT
1 CAAACATCCAATTATGATCTGTT-T-TAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTT
* * ** * *
204606 TTAA-AGTTCTAAAATAATTTAAAGCGAGTAACTA-TGCTTTCAAAAG-ATGAGTGACCATAAAT
63 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCAAAGGCATGAGTGACTATAAAT
* * * * * * *
204668 GTACTTTT-TTAGTCAATAGATGGCTTTTACATCATGTTTCTTGAGGAAAACATTCAATTATGAT
126 GGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGAT
* * *
204732 ATGTTTTAA-CTAAAAAT-AAAAAAATTTCAACTTAAAATCATTTATAAGACTAT-AAATCATTT
190 CTGTTTTAATC-AAAAATGAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTT
* * * * * * *
204794 AAAGCAAGTAAATAGCCTTTTGAAGGCATGAGTGGCTATAAATGGACTTTT-TCTATCAATTGAT
253 AAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGAT
* * * * *
204858 AGCTTTCGCTTTACA-TTCTTCAATG
317 GGCTTTCACTTTTCATTTCCT-AAGG
* ** * * * *
204883 TAAACATTGAATTATGATC-GTTGTGTAACAAAAAATGAAAAAAAAAGTGAATTTAAAATTATAT
1 CAAACATCCAATTATGATCTGTT-T-TAACAAAAAATG-AAAAAAAATTCAACTTAAAATCAT-T
* * * *
204947 T-TAA-AGTTCT-AAACTCATTTAAAGCGAGTAACTAGGCTTTCAAAAG-ATGAGTGACCATAAA
62 TATAAGA-TTATAAAAC-CATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAA
** * * * *
205008 TATACTTTT-TTAGTCAATGGATAGCTTTTACTTCATGTTTCTTGAGGGAAACATCCAATTATGA
125 TGGACTTTTCTT-GTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGA
* * * * * *
205072 TTTGTTTTAATGAAAAATTAAAACAATTCAACTCAAAATCTTTTATAAGATTATAAAACCATTTA
189 TCTGTTTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTA
** * * * * *
205137 AAGTAAATAACTTGTCTTTC-AAGGGCATAAGTGACTATAAATGGACTTTTGTTGTCAATGGATA
254 AAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* * * * *
205201 GCTTTTA--ATTCATGTTTCTCGAGC
318 GCTTTCACTTTTCAT-TTCCT-AAGG
* * * * * * *
205225 CAAACATCCAATGATGATTTGTTTTAACTAAAAAT-AAAAAAAATTCAGCTTAGAATCATCTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * **
205289 AGATTCTAAAACCATTTAAAGCGAGTAACAAGCCATTCTAAGGCAAAAGTGACTATAAATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * *
205354 TTTCTTGTCAATGGATGGCTTTTGTTTTACGTTTTTTAAGGCTAACATCCAATTATGATATGTTT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTT
* * * **
205419 TAATCAAAAAAGAAAAGAATTCAACTTAAAATTATTTATAAGATTATAAAACCATTTAAAATGAG
196 TAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAG
* * * ** * * *
205484 TAATTGGTATTTTAAAGGCATGAGTGACTATAAATGAACATTTCTTATCAATGGATGGCTTTCAC
261 TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCAC
* * * **
205549 TCTAT-GTTTTCTAATA
326 T-TTTCATTTCCTAAGG
* * * * * * * * * *
205565 CAAATATCCAGTTCTAATCTATTTGAGCCAAAAAGTTAAAAAAAAATT-AACTTAAAATCTTTTA
1 CAAACATCCAATTATGATCTGTTTTA-ACAAAAA-ATGAAAAAAAATTCAACTTAAAATCATTTA
* * * *
205629 CAAGATTTTAAAACCATTTAAAGCG-GCTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAG
64 TAAGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * ** ** * * *
205693 ACTTCTCTAGTCAA-GGATAGCTTTCACTTCACATTT-TTAGATGCAAACATCTAATTATGATGT
128 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCT
* * * * *
205756 CTTTTAAACAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAG-TCTAT-AAATCTTTTAAA
192 GTTTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGAT-TATAAAACCATTTAAA
* * * * * ** * *
205819 GCAAGTAATTAGCCTTTTC-AAGGCACGAGTGACTATAAATGGACTTCTCTTACCAATTGATAGC
256 GCGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* ** *
205883 TTTTA--TTTCATGTTTTTCAGTG
320 TTTCACTTTTCAT-TTCCTAAG-G
* * ** * * * *
205905 TAAACATCGAATTATGATC-GATGTGCAACAAAAAATGAAAACAAAAGTGAATTTAAAATTATTT
1 CAAACATCCAATTATGATCTG-T-TTTAACAAAAAATGAAAA-AAAATTCAACTTAAAATCATTT
* * * * * *
205969 TTAA-AGTTATAAAATCACTTAAAGCGAGTAACTAGGCTTTTAAAGG-ATGAGTGACTATTAATG
63 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * * *
206032 GACTTCTCTAGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGCAAACATTCAATTATTATCT
127 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * *
206097 ATTTTAATGAAAAATGAAAAAAAAAACTCAACTTAAAAAT-ATTTATAAGATTGTAAAACCATTT
192 GTTTTAATCAAAAATG---AAAAAAATTCAACTT-AAAATCATTTATAAGATTATAAAACCATTT
*** * * * * *
206161 AAATTAAGTAACTTGTCTTTC-AAGGGTATAAGTGACTATAAATAGAC-TTTCTTGTCAATAGAT
253 AAAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGAT
* *
206224 -GATTT---TTGGTTCATGTCTTCTAAGG
317 GGCTTTCACTT--TTCAT-T-TCCTAAGG
* * * * * * **
206249 AAAACATCAAATGATGAT-TTTTTCTAACTAAAAATGAAAAAAGAAATTCAACTTAGAATCAGCT
1 CAAACATCCAATTATGATCTGTTT-TAACAAAAAATG-AAAAA-AAATTCAACTTAAAATCATTT
* * * * * * * * *
206313 ACAAGATTCTAAAACTATTTAAACCTAGTAACAAG-CTATTCCATGGCATAAGTGACTATAAATG
63 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCT-TTCAAAGGCATGAGTGACTATAAATG
* *** * *
206377 GACTTTTCTTATCAATGGATGGCTTTCATTTCATGTTT-TTCAAGGCAAACATCTAATTATGATA
127 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATC
* * * *
206441 TGTTTTAACCAAAAAAGAAAAGAAATTCAACTTAAAATTATTTATAAGATTATAAAACTATTTAA
191 TGTTTTAATCAAAAATGAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * * *
206506 AGCGAGTAACTAGTATTTTGAGGGCATAAGTGGCTCTAAATGGACTGTTCTTGTCAATGGATGGC
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * * *
206571 TATCACTTTGCTTTTCCTGAGG
320 TTTCACTTTTCATTTCCTAAGG
* ***
206593 CAAACATCCAATTATGATCT-ATTTAAGTGAAAAT--AAAAAAA-T-AACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
206653 AGACTT-TAAAACCATTTAAAACGATTAACTAGTATATCGAAGGCATAAGTGACTATAAATGGAC
66 AGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * ** * * *
206717 TTCTCTAGTCAAAGGTTGGCTTTCGCTTCACAATTTTTTGAGGCAAACATCCAATTATGATATGT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * *
206782 TTTAACCAAAAAT-AAAAAAATTTCAACTGAAAATCATTTATATGATTACAAAACCATTT-AA--
194 TTTAATCAAAAATGAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * ** * *
206843 -AGTAACTTGTCTTTC-AAGGATATTAGTGGTTATAAATGGACTTTTCTTGTCAATGGATAGTTT
258 GAGTAACTAGTCTTTCGAAGG-CATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
*** * * *
206906 TTGGTTCAT-ATTTTC-AGAGA
322 TCACTT-TTCATTTCCTA-AGG
* * * * * * * * *
206926 CAAACATCTAATGATGAT-TTTTTTAACCAAAAATAAAAAAAAAATTCAACTTAGAATGATCTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-GAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * *
206990 AAGATTCTAAAACTATTTAAAGTGAGTAACAAGCTATTTC-AAGGCATAAGTGACTATAGATGGA
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAG-TCTTTCAAAGGCATGAGTGACTATAAATGGA
* * * * * * * *
207054 CTTTTCTTCTCATTGGATAGCTTTTGTTTCATGTTTTTTTAGGCAAACATCCAAATATGATATGT
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * *
207119 TTTAACCAAAAAAT-AAAAGAAATTCAACTTAAAACCACTTATAAGATTATAAAACCATTTAAAG
194 TTTAATC-AAAAATGAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * *
207183 CGAGTAACTAG-CATTTAGAAGGCATGAGTGACTATTAATGGGCTTTTCTTGTCAATAGATGGCT
257 CGAGTAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * * *
207247 TTCGCTTTGCATTT-TTCGAGC
321 TTCACTTTTCATTTCCT-AAGG
* * * * * * * * *
207268 CAAATATACAATTATGATCTGTTTGAGCTAAACATGAAAACAAATTTAACTTGAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
207333 AGATTTTCAAACCATTTAAAGCG-GTTAACTTGTATTTCGAAGGTATAAGTGACTATAAATGGAC
66 AGATTATAAAACCATTTAAAGCGAG-TAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * *
207397 TTCTCTAGTCAAGGGATGGCTTTTGCTTCATATTTCTTAAGGCAAACATCCAATTATGATATGTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * *
207462 TTAACCAAAAAT-AAAAAAATTTCAA-TTAAAAATCATTTATAAGACTAT-AAATCATTTAAAGT
195 TTAATCAAAAATGAAAAAAA-TTCAACTT-AAAATCATTTATAAGATTATAAAACCATTTAAAGC
* ** * * * **
207524 GAGTAACTAGCCTTTCGAAGGCATGAGTGGTTATAAATAGACTTTT-TCTATCAATTGACAGCTT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGCTT
** **
207588 TTGC--TTCACTTTCCTTAACA
322 TCACTTTTCA-TTTCC-TAAGG
* ** * * * * * *
207608 TAAACATTGAATTATGATC-GATGTGTAAAAAAAAATGAAAAAAAAGTGAATTTAAAATCATTTT
1 CAAACATCCAATTATGATCTG-T-TTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTA
* * *
207672 TAA-AGTTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCAAAGG-ATGAGTGACCATAAATGG
64 TAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * ** * * *
207735 ACTTCTCTAGTCAATGGATGGCTTTTGCTTCACATTTCTCAAGGGAGACATCCAATTATGATCTG
128 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* * **
207800 TTTTAATGC-AAAATGAGAAAAAAATT-AACTTAAAATCATTTATAA-AATCTAAAATTATTTAA
193 TTTTAAT-CAAAAAT--GAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * *
207862 AG-TATGCAACTTGTCTTTC-AAGGGCATGAGTTACTATAAATGGACTTTTCTTATGAATGGATG
255 AGCGA-GTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * *
207925 GCTTTCAGTTCACGTTTCCTAAGA
318 GCTTTCACTTTTCATTTCCTAAGG
* ** * * ** * * * * *
207949 AAAACATCCAACGATGAT-TTTTTTTATGAGAAATGAAAAACAAATTCAACTTAGAGTCATCTAG
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAA-AAATTCAACTTAAAATCATTTAT
* * ** * * * * * *
208013 AAGATTCTAAAACTATTTAAAGCGAGTAAGAAGCCATTCCAAGACATAAGTGACTATAAATGAAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* ** *
208078 TTTTCTTATCAATGGATGGCTTTTATTTCATGTTT-TTCAAGGCAAACATCCAATTATGATATGT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTGT
* * *
208142 TTTAA-CTAAAACAT-AAAAAAATTTCAACTTAAAGTCATTCATAAGATTATAAAACTATTTAAA
194 TTTAATC-AAAA-ATGAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
*
208205 ACGAGTAACTAG-CATTTCG-AGGCATGAGTG-CTTATAAATGGA-TATTTCTTGTCAATGGATG
256 GCGAGTAACTAGTC-TTTCGAAGGCATGAGTGAC-TATAAATGGACT-TTTCTTGTCAATGGATG
* * * ** *
208266 GTTTTTACCTGACGTTTCCTAAGG
318 GCTTTCACTTTTCATTTCCTAAGG
* * * * * *
208290 CAAACATCCAATTATAAGCTGTTTGAGCCAAAAATAAAAAAAAATT-AACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
** ** * ** ** * *
208354 AGCCTATAAAA-CATCCAATTA-TGA-T--CTA-T-TTTAACAAA-AAATGA-AAAC-A-AATTC
66 AGATTATAAAACCATTTAA--AGCGAGTAACTAGTCTTT--CAAAGGCATGAGTGACTATAAATG
* * * * * *** ** * * *
208408 AAGTTAAAATCATT-T--AT--AT-G--ATTACAAAATCATT-TGAAGG--GA-GT--AATTA-G
127 GACTT---TTC-TTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATG
* * ** * * **** * * *
208458 A-CT-TTTAAAGTTATGAATGACTATAAA--CAAACTTTTCTTGTCAATTA-ATGACCTT-TGCT
188 ATCTGTTTTAA-TCAAAAATGA-AAAAAATTC-AAC--TTAAAATCATTTATAAGA--TTAT--A
** ** ** * **** * * * * **
208517 TCACGTTTTTCAGTGCA--AAC-A-TCAAATTAT-G-ATTTTTGTGTAACCAAAAATGAGAAAAA
244 AAACCATTTAAAGCG-AGTAACTAGTC---TT-TCGAAGGCATGAGTGACTATAAATG-G--ACT
** * * * * * * * ** *
208576 GGTCAATT-TAAAAT-TAT--TTTTAAAGTTATAAAATCACTTAAAG
301 TTTC--TTGT-CAATGGATGGCTTT-CACTTTTCATTTC-C-TAAGG
* * * ** * * *** * *
208619 C-AA-GT--AATTA-G-GCT-TTTAAAGGATAAGTGGCTATATATGGACTTC-TCTAGTAAATGG
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAAT-G--A-A-AAAAAATTCAACT--TAAA---
* * * * ** * *
208676 ATTGCTTTTGCTTAATGTTTCTCGAGGCAAA-CATCCAATTA-TGA-T-A-T-GT-TTT--AATG
56 A-T-CATTT--ATAA-GATTAT--A---AAACCATTTAA--AGCGAGTAACTAGTCTTTCAAAGG
* * * * ** ** * * * ** **** *
208732 CA-AAATGA-AAAAAATTCAACTTAAAACCATTTATAAGAT-TATAAAACCATTTAAAGTAAGTA
109 CATGAGTGACTATAAA-TGGACTT---TTC--TTGTCA-ATGGAT---GGC-TTTTGCTTCA-T-
* ** ** * * * ** ** ***
208794 ACTTATCTTTCAAGGGTATTAGTGACTATAAATGAAAT-TTTCTTGTCAATAAATG----GCTTT
161 -GTT-TC-TT-AAGGCAAACA-T-CCAAT-TATGATCTGTTT-TAATCAA-AAATGAAAAAAATT
* * * * ** * * *
208854 CGA-TT--GA-CATTTACCAAG----GAAAA-CA-TCCAA-CGA-TGATTTGT-TTT--AATGG-
217 CAACTTAAAATCATTTA-TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCGAA-GGC
* * *** * * * ** * ** *
208903 A-AAATGA--A-AAAAAAAATTTAACTTAGAATCATTTACAAGATTTTAAAACTATTTAAAGCAA
280 ATGAGTGACTATAAATGGACTTT-TCTT-G--TCA-ATGGATGGCTTT--CACT-TTT----C-A
*
208964 GTGATAAGCCATTCCAAGG
332 -T--T--TCC--T--AAGG
* * * * * ** *** ******* *
208983 CATAA-GTGACTATAAATGGA-CTTTTCTTGTCAACCGATGACTTTTGTTTCACGTTTTTCATTG
1 CA-AACAT-CCAAT-TAT-GATCTGTT-TTAACAAAAAATGAAAAAAAATTCA------AC-TT-
* ** * ** * *** * *
209046 CAAACATCTAATTATGATCTATTTTAACAAAAAATTAAAAAAATTCAACTTAAAATCATTT-ATA
53 -AAA-ATC-ATTTAT-A-AGATTATAA-AACCATTTAAAGCGAGT-AAC-T--AGTC-TTTCA-A
* * * **
209110 A-G-ATTA-TAAAGCTATTGAAA-GCGAGTAACTGACATT-TCAATGGTATGAG----TGACTAT
106 AGGCATGAGT-GA-CTA-T-AAATG-GACT---TTTC-TTGTCAATGG-ATG-GCTTTTG-CT-T
* * * * * * * * *
209166 AAATGCGCTTCTCT-AGTCAATGA-ATGGC--TT-TCGCTTCACG-TTT-CTC---CA-GACAAA
158 -CAT--GTTTCT-TAAGGCAA--ACAT-CCAATTAT-G-ATC-TGTTTTAATCAAAAATGAAAAA
* * * * ** * * * * * * *
209220 CATTCAATTTTGATATGTTTTAATTGAGAAT-TAAAA-CAATTCAA-C--TTAA--AATCATTTA
213 AATTCAA-CTTAAAATCATTT-A-TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTC
* *** * ** ** * * * * * * *
209278 TAAGATTTTA-AAACTATTTAAA-GCGAC-TAACTAGT-ATTTAGAAGGCATGAGTGACTATAAA
274 GAAGGCATGAGTGACTA--TAAATG-GACTTTTCTTGTCA-ATGGATGGC-T--TTCACT-T--T
* * *
209339 T-AGGCTTTTCT-TGT
329 TCA---TTTCCTAAGG
* * * * *
209353 CAATGA-AT-GATTTTTGTTTCACGTTTTCTGAAGCACATAACCAATTACGATCTGTTTTAACCA
1 CAA--ACATCCAATTATG-ATC-TG-TTT-T-AA-CA-A-AA--AA-T--GA--------AA--A
* * * * * * *
209416 AAAA-T-AA--AAACAATTCAACTTAAAATCATTTATAAGA--TTTTAAAACCGTTTAAAGTGAT
41 AAAATTCAACTTAA-AA-TC-ATTTATAA-GA-TTATAAAACCATTT-AAAGCG-----AG---T
* * * * ** ** * * ******
209475 GAAGTAGACTTTCAAAAGCATGAGTGGCTAT-AA--G--TTTTAATGAAAAAGAAAAAAAATT-C
92 -AACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC
* * * ** * * * * **
209534 ATCATAAAATCATT-TATAAGATTGTAAAATCATTTAAAGCTAGTAACTTATCTTTTAAGGGAAT
156 TTCAT---GT--TTCT-TAAG---G-CAAA-CA-TCCAA-TTA-TGA--TCTGTTTTAA-TCAA-
* ** ** * * * **** ***
209598 GAATGACTATAAATATACTTTTA-TTGTCAATGGATGGCTT-T-CGCTTCACGTTTCCCCAGGAA
203 AAATGA--A-AAA-A-A-TTCAACTT-AAAAT-CAT---TTATAAGATT-A--TAAAACCATTTA
* * * ** * ** * * * ** *** * *
209660 AAAC-A-TCAAATGATGATTTGTTTTAA-CCAAAAATGA-AAAAAATCAACTTAAATTCATCTAT
254 AAGCGAGT-AACT-A-G-TCT-TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-GTCAAT
* ** *** ** * *** *
209721 AAGAT-TATAAAACCATTAAAAACGGGTAA-G
313 -GGATGGCTTTCACTTTTCATTTC--CTAAGG
* ** * * * ***** * *
209751 -AAGCCATTCCAAGGCATGA-CTG-----ACTATAAATGGACTTTTATT---TTTAATGGATGGC
1 CAA-ACA-TCCAA-TTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAA--AAT--C
* * * * * * * * * *** ** *
209806 TTTTGATTCACATTTCCCAAGGCAAACATCCAATTATGATCTATTTTAACTAGAAATGAAAAAG-
59 ATTT-A-TAAGA-TT----A--TAAA-A-CCATTTA-AAGCGA--GTAACTAGTCTTTCAAAGGC
** * * ***** ** * * ** * *
209870 AAAATTGACTTAAAATCATGTATAAGA-TTTTAAAACCATATAAAACGAC--TAAC-TAATATTT
110 ATGAGTGAC-TATAA--ATG-----GACTTTTCTTGTCA-AT-GGATGGCTTTTGCTTCATGTTT
** * * * * * * * ****** *
209931 -GGAAGGCATAA-GTGACTATAAATGGA-CTTTTTTTAT-AAATGGATGATTTTTTGCTTC-GCG
165 CTTAAGGCA-AACAT-CCAAT-TAT-GATCTGTTTTAATCAAA--AATGA--AAAAAATTCAAC-
* * * * ** * *** * *
209991 TTCCCATGGCAAAGAACCAATTATAATATATTTTAACAAAAATTGAAAATAATTCAACTTAAAAT
221 -T----T----AA-AATCATTTAT-A-AGATTATAA-AACCATTTAAAGCGAGT-AAC-T--AGT
* ** * * *
210056 CAATTATAAGATTATAAAACCATTTGAAGGGAGTAACTTATCTTTCAAGGGCATAAGTGACTATA
269 C--TT-T-CG------AAGGCA--T-----GAGTGAC-TA----T-AA----AT--G-GACTTTT
* * * * * ** * **
210121 ATGGACTTGTCAATGGATGCCTTTTGCTTTAT-GTTTCCCGAGG
304 CTTGTC-A----ATGGATGGCTTTCACTTT-TCATTTCCTAAGG
* * * *
210164 CAAACATCCAATGATGAAT-TTTTTTAACCAAAAATGAAAAAAAATTTCAACTTAAAATCATCTA
1 CAAACATCCAATTATG-ATCTGTTTTAACAAAAAATGAAAAAAAA-TTCAACTTAAAATCATTTA
** * * * * * *
210228 -AATGATTCCAAAACCATTTAAAGCGGGTAACAAGCCATTCCAAGGCATGAGCGACTATAAATGG
64 TAA-GATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* ** * *
210292 ACTTTTTCTAT-T-AATGGATGGCTTTTGCTTCATATTTCCCAAGGCAAACATCCAATTATAATA
128 AC-TTTTCT-TGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATC
* * * * * * * * *
210355 TGTTCTAACCAAAAGTAAAAAAAAGTTTAA-TTCAAAATCATTTATAAGGTTTTAGAA-CATTAA
191 TGTTTTAATCAAAAATGAAAAAAA-TTCAACTT-AAAATCATTTATAAGATTATAAAACCATTTA
* * * *
210418 AAGCGATTAACTAGTCTTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTATCAATGGATGA
254 AAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
** ** ** *
210483 CTTTTGCTTCACATTTTTTGAGG
319 CTTTCACTTTTCATTTCCTAAGG
* * * *
210506 TAAAAATCCAATTATGATATGTTGTAACAAAAAATGAAAAAAAAATTCAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATG-AAAAAAAATTCAACTTAAAATCATTTAT
* ** * * * * * * * *
210571 ACGATTATAAAACCATTGCAAGTGAGTAATTAATATTTCGAAGGTATAAGTGACTATAAATAGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
** * * * * *
210636 TTTTCTTACCAATGGACT-ACTTTTGCTTAATGTTTCTCAAGGCAAATATCCAATTATGATCTGC
130 TTTTCTTGTCAATGGA-TGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * * * * *
210700 TTTAATGAAAAATGAAAAACAATTCAACTAAAAATCGTTTATAGGATTATAAAAACGTGTAAAG-
194 TTTAATCAAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * *
210764 GCAGTAAGT--TACCTTCCAAGAGTATGAGTGACTATAAATGGACTTTTCATGTCAATGGATGAC
258 G-AGTAACTAGT-CTTTCGAAG-GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* ** * *
210827 TTTCGCTTCACGTTT-TTAAAGG
320 TTTCACTTTTCATTTCCT-AAGG
**
210849 CAAACATCCAATTATGATCTGTTTTAACCCAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * ** ** *
210913 AGATTTTAAAA-CAATAAAAGCGAGTAACTAGTCTTTCAAAGGTGTGAGCAACTATAAATAGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
** * * * *
210977 TTTCTTGTCAATGGATGGCTTTCACTTCACAT-TTTC-TAAGGTAAACATCTAAATATGATCTAT
131 TTTCTTGTCAATGGATGGCTTTTGCTT--CATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * *
211040 TTTAA-C---CA--AAAAAAA-TCAACTTAAAATCATTTATAA-ATT-TATAAATCATTCAAAGC
194 TTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATA-AAACCATTTAAAGC
* * * * *
211096 GAGTAACTAGCCTTTCGAAGGCATGAGAGACTATAAGTAGACTTTACTTGTCAATGGATGGCTTT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
** *
211161 CACTTCACATTTCCTAAGA
323 CACTTTTCATTTCCTAAGG
* ** * *
211180 CAAATATATAATTATGATCTGTTTTAGCAAAAAAT-AAAAACAAGATTCAACTCAAAATCATTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAA-AA-ATTCAACTTAAAATCATTTA
* * * *
211244 TAAGATTATGAAACCATTTAAA-TGAGTAACTAG-CATTTCGAAA-GCATGAGTGGCTATAAATA
64 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTC-AAAGGCATGAGTGACTATAAATG
* * * * * *
211306 AACTTTTCTTGTCAATGGATGGCATTCGTTTCACGTTTC-TAGAGGCAAACATCCAATTATGATA
127 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATC
* * *
211370 TGTTTTAA-CGAAAAATGAAAAAAAAATCAACTAAAAATCATTTACAAGATTATAAAACCATTTA
191 TGTTTTAATC-AAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTA
* * * * * * *
211434 AAGCGAGTTAGTAATATTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGGATGG
254 AAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* *
211499 CTTTCGC--TTCATGTTTCTTAAGG
319 CTTTCACTTTTCA--TTTCCTAAGG
* * * * * *
211522 TAAGCATCCAATGATGATTTGTTTTAACCAAAAATGAAAGAAAAATTCAACTTAAAATCATTCA-
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAA-AAAAATTCAACTTAAAATCATTTAT
* * * * * * *
211586 AAG--------------T-GA-C--G-AACAAGTATTTCGAAGGTATAAGTGACTATAAATAGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * ** * * *
211632 TTTTCTTATCAAAGGAT-GATTTTCACATT-ACGTTTCTCCA-GCTAAATATTCAATTATTATCT
130 TTTTCTTGTCAATGGATGGCTTTT-GC-TTCATGTTTCTTAAGGC-AAACATCCAATTATGATCT
* * * * *
211694 ATTTTAA-C-------AAAAAAATTAAAATTAAAATCATTTATAAAATTACAAAACCATTTAAAG
192 GTTTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
** * ** * * * * *
211751 TAAATATTTAGGCTTTCGAAGGCATGAATGACTATAAATAGACTTTGTTTTGTCAATTGATGGCT
257 CGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTT-TCTTGTCAATGGATGGCT
* * * *
211816 TCCAC--TTCATGTTTTCTCATG
321 TTCACTTTTCA--TTTCCTAAGG
* * * * *
211837 TAAACATCAAATTATGATATGTTTT-A-AAAAAAT-AAAAAAAATT-AATTTAAAATCATTTTTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
211898 A-AGTTATAAAATCAATTAAAGTGAGT-ACCAATGCTTTCAAAGGCATAAGTGCCTATAAATAGA
66 AGA-TTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCAAAGGCATGAGTGACTATAAATGGA
* * * *
211961 CTTTTCTTGT-AAGTGGATAGCTTTTG-TTATATGTTTCTCAAGGAAAACATCCAATTATGATCT
129 CTTTTCTTGTCAA-TGGATGGCTTTTGCTT-CATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * ** * *
212024 ATTTCAAGTGAAATTTTTTTTAAAAAAAAAGGTTCAACGTAAAATTCATTTATAAGATTATAAAA
192 GTTTTAA-TCAAA-----AAT-GAAAAAAA--TTCAACTTAAAA-TCATTTATAAGATTATAAAA
* * * * * *
212089 CCATTTAAAGTGAGTAATTAGT-TTGTTGAAGGCATGAATCA-TAGT-AATGGAACTTTTCTTAT
247 CCATTTAAAGCGAGTAACTAGTCTT-TCGAAGGCATGAGTGACTA-TAAATGG-ACTTTTCTTGT
* * ** * * *
212151 CAATTGATGGCTTTCAATTAACCTTTCTTGAGG
309 CAATGGATGGCTTTCACTTTTCATTTCCTAAGG
** * * * **
212184 CAAACATCCAAACATGATTTGTTTTGATC-AAAAATGAAAAACAATTTTACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTT-AACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * * *
212248 CAGATTATAAAACCATTAAAAGTGAATAACAAGTCTTTCGAAGGTATGAGTGATTATAAATGAAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * ** ** * * * *
212313 TTTTCTTGTCTATGAATGGCTTTTGCTTCACATTTCCCAAGGAAAACATCCAATTATAATCTATG
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * *
212378 TT-ATCAAAAAATGAAAAAAAATCAACTTAAAATAATTTATATGATTATGAAACCATTGAAA-TG
195 TTAATC-AAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* * * * * * * *
212441 AGTAACTAGACCTTT-AAAGGCATGCATGAGTGGCTACAAATAGACTTTTGTTATCAATAGATGG
259 AGTAACTAG-TCTTTCGAA-G---GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGG
* ** **
212505 ATTTTGCTTCACATTT-CTCAAGG
319 CTTTCACTTTTCATTTCCT-AAGG
* *
212528 TAAACA-CTCAATTATGATATGTTTT----AAAAA--AAAAAAAATTCAACTTAAAATCATTTAT
1 CAAACATC-CAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * *
212586 AAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAAA-GTATGAGTGGCTATATAAATA
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCAAAGGCATGAGTGAC--TATAAATG
* * * * * * *
212650 AACTTTTCTTATCAATGGATGGCTTTTGCTTCACG-TTCATGAGGCAGACATCCAATTATGATAT
127 GACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * *
212714 ATTTTAA-CAAAAAATGAAACAAAA-TCAACTTAAAATCATTTACAAGATTATAAAATCATTTAA
192 GTTTTAATC-AAAAATGAAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * * *
212777 ATCGAGTACCTAGTATTTTGAAAGCATGAGTGACTATAAATGGACTTCTCTAGTCAATGGATGGC
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * *
212842 TTTCA--TTTCATATTTCTTTAGA
320 TTTCACTTTTC--ATTTCCTAAGG
* * * * *
212864 CAAACATTCAATTATGATTTG-TTTAACTAAAAAT-AAAATAAATTTAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
212927 TGACTAT-AAATCATTCAAAGTGAGTAACTAGCCTCTT-AAAGGTATGAGTGACTATAAATGGAC
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCT-TTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** * * * * *
212990 TTTTCTTATCTAATGCATAGCTTTCACTACAAGTTATC-CAAGACAAACATCCAATTATGATATG
130 TTTTCTTGTC-AATGGATGGCTTTTGCTTCATGTT-TCTTAAGGCAAACATCCAATTATGATCTG
** * * *
213054 TTTTAGCCAAAAATGAAAAAAAAATTCAATTTCAAATCATTT-TCAAGATTATAAAACCATTAAA
193 TTTTAATCAAAAATG--AAAAAAATTCAACTTAAAATCATTTAT-AAGATTATAAAACCATTTAA
** * * * * * * * * *
213118 AATGAGTAGCTAGGCTTTCAAAGGCATAAGAGACTATAAATGGATTTTTCATCTTAATGGATGGC
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC
* * *
213183 TTTTAC--TTCATGTTTCTTGAGG
320 TTTCACTTTTCA--TTTCCTAAGG
* * * * * *
213205 CAAACATCCAATTATGAACT-CTTAAGACTAAAAAA-GAAAAAAATTTTAACTTAAAATTATTTA
1 CAAACATCCAATTATGATCTGTTTTA-AC-AAAAAATGAAAAAAAATTCAACTTAAAATCATTTA
* * * * * * *
213268 TAAGATTATAAAACCATATGAACGCGAGTAACTAGGCTTTCGAAGGTATAAGTGACTATAAATAG
64 TAAGATTATAAAACCAT-TTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * ** * *
213333 ACTTTCCTTATCAATGGATGGCTTTTGCTTCAGGTTTGATGAGGCAAACATCCAATTATGATATG
128 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* * * * *
213398 TTTTAATGAAAAATGAAAAAAAATTCAACTCAAAATAATTTATAAGATTATAAAATCATTAAAAG
193 TTTTAATCAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * * * * * ** *
213463 TGAGTAACTAGTCTTTCAAAGGTATGAGTGGCTATAAGTGGACTATTCTTGTTAATACATAGCTT
257 CGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
** ** *
213528 TTGCTTCACATTTCTTAAGG
322 TCACTTTTCATTTCCTAAGG
* * * ** * *
213548 CAAACATCTACTTATGATCCGTTTTAATGAAAAATGAAGAAAAATTCAACTTAAAATCATTTGTA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * **
213613 AGATTATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAGTGGCTATAAATAAACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * *
213678 TTTCTAGTC--TGCGAATGGCTTTTACTTCATGTTTC-TAGAGGAAAACATCCAATTATGATTTG
131 TTTCTTGTCAATG-G-ATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTG
* * * * *
213740 TTTTAA-CTAAAAATAAAAAAAATT-AACTTATAATTATTTATAAGACTAT-AAATC-TTTCAAA
193 TTTTAATC-AAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTT-AAA
** * * * * *
213801 GCGAGTAACTAACCTTTC-AAGGCATGAGTGACTGTAAGTGGACTTTTCTTATCAATTGATTGCT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* * * *
213865 TTCA--GTTCACCTTGCTCGAGG
321 TTCACTTTTCA-TTTCCT-AAGG
* * * * * *
213886 CAAATATCAAATTATGATCCGTTTTAATC-AAAAGTG-AAAAAAGTTCAACTTAAAATCAGTTAT
1 CAAACATCCAATTATGATCTGTTTTAA-CAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * * *
213949 AAGATTATAAAATCATTGAAATCGAATAACTAATATTTCAAAGGCATGAATGACTATATATGAAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* *
214014 TTTTCTTGTCAATGGATGG-TTGTTGCTTCATGTTCCTT---G---AGA--CAATTATGATCTAG
130 TTTTCTTGTCAATGGATGGCTT-TTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCT-G
* ** * *
214070 TTTT-AGCTAAAAGTTAAAAAAAAAAGGTTCAACATAAAATAATTTATAAGATTATAAAACCATT
193 TTTTAATC-AAAA---ATGAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAACCATT
* * * * * * * * * *
214134 TAAAGTGAGTAAATAGT-TTGTTGAAGGCATGAATGATTGTAAATGGACTTTTTTTATAAATTGA
252 TAAAGCGAGTAACTAGTCTT-TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGA
* * ** *
214198 TGGCTTCCAATTAACCTTTCCTAAGG
316 TGGCTTTCACTTTTCATTTCCTAAGG
* * * * * *
214224 CAAATATCCAATTATGATATG-TTTGACAAAAAAAT-AAAAAAAACTGAACTTAAAATCATTGAT
1 CAAACATCCAATTATGATCTGTTTTAAC-AAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * * * * *
214287 AAGATTATAAAATCATTGAAAGCGGGTAACTAGTCTTTCGAACGCATAAGTGACTATGAACGAAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * ** *
214352 TTTTCTTGTCTATGGATAGCTTTTCCTTTATGTTTCTCAAGGCAAGTATCCAATTATGATCTATT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * *
214417 TT-ATGAAAAAATAAAAAAAAAGTTTCAACCTAAAATAATTTATAAGATTATAAAACCACTGAAT
195 TTAAT-CAAAAAT-GAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * * * * *** *
214481 GTGAGTAAATAGTCCTTCAAAGGTATTAGTGGCTACAAATATTCTTTT-TCTGTCAATGGATAGC
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCT-TGTCAATGGATGGC
* ** *
214545 TTTTACTTCACATTTTCC-AAGA
320 TTTCACTTTTCA-TTTCCTAAGG
* * * * *
214567 CAAACATCCAATTATGATATGTTTTAATAACAAATTAAAAACAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * ** * ** *
214632 AGGTTATAAAACTATTTAAAGCAAGTAACTAGTATTTTGAAGGCATGGGTGGTTGTATGAATGGA
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGT-G-ACTATAAATGGA
* * ** *
214697 CTTTTCTTGTCAATCGATGGCTTTCGCTTCAAATTTCCTAAGGCAAACATCCAATTATGATCTG-
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
** * * * *
214761 TTTAA-CTAAAAAT-AAAAAAATAAAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGT
194 TTTAATC-AAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * ** * * **
214823 GAGTGACTAGCCTTTTAAAGGTATGAGTGACTATAAATGGACCTTTT-TTATTTGATGGATGGCT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGA-CTTTTCTT-GTCAATGGATGGC-
* * * * *
214887 TTTGCA-ATATAATTT-TTGAGAG
320 TTT-CACTTTTCATTTCCTAAG-G
* * *
214909 -AAACATCCAATTATGATATGTTTTAGCAAAAAATGAAAAACAATTCAAAC-TAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTC-AACTTAAAATCATTTAT
* * * * * * * **
214972 AAGATTATAAAACCATTGAAAGTGAGTAA-TCAGGCTATCGATGGCATAAGTGACTATAAATAAA
65 AAGATTATAAAACCATTTAAAGCGAGTAACT-AGTCTTTCAAAGGCATGAGTGACTATAAATGGA
* * * * * *
215036 TTTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAACTATGACCTAT
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * * * * *
215101 TTTGACCAAAAATGAAAACAGTTCAACTTAATATCATTTATAAGATTATAAAATCATCTAAAAGC
194 TTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCAT-TTAAAGC
* * * * * * *
215166 -ATTGAATTAGGCTTTCGAAGGCATGAGTGACTATAAAAT-GAC-TTTCAGTATCAACGGATAGC
258 GAGT-AACTAGTCTTTCGAAGGCATGAGTGACTAT-AAATGGACTTTTC-TTGTCAATGGATGGC
** * *
215228 TTTTGC--TTCATGTTTCTTGAGG
320 TTTCACTTTTCA--TTTCCTAAGG
* * ** *
215250 TAAACATCCAATTGTGATCTGTTTTAATGAAAAATG-AAAAAAATTCAACTTAAAATAATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * *
215314 AGATTATAAAATC-TTTGAAAGCGAGCAACTAGT-TCTTCAAAGGCATGAGTGGCTATAAGTGGA
66 AGATTATAAAACCATTT-AAAGCGAGTAACTAGTCT-TTCAAAGGCATGAGTGACTATAAATGGA
* * * * * ** * *
215377 CTATTCTTATGAATGGATGGCTTTTGCTTCA-GTGTGCTCAAGGTGAACATCCATTTATGATCCG
129 CTTTTCTTGTCAATGGATGGCTTTTGCTTCATGT-TTCTTAAGGCAAACATCCAATTATGATCTG
* * * * **
215441 TTTTAATGAAAAATGAAAAAAAACTTCAACTCAAAACCATTTATAAGATTATAAAACTATTTGGA
193 TTTTAATCAAAAATG-AAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * * *
215506 GCGAGTAACTAGTATTTCAAAGGCATAAGTGGCTATAAATGGACTTTTCTTTTGAAAGGATGGCT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
** * *
215571 TTGGCTTCTT-GTTTCCTGAGG
321 TTCACTT-TTCATTTCCTAAGG
* * * * * *
215592 TAAACATCCAATTATAATATGTTTTAACAAACAATGAAAAAATAATTTAACTTAAAATCATTTAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAA-AATTCAACTTAAAATCATTTAT
* * * * * *
215657 AAGATTATAAAACCATTTAAATCGAGTAGCTAGTATTTCGAAGACATGAGTGACAATAAATGGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * ** * * * *
215722 TTCTCTAGGCAATGGATGGCTTTCACTTCATGTTTCTCAAGGAAAACATCCAATTATGATATCTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * * *
215787 TTAA-CTAAAAATAAAAAAAAACTCAACTTAAAATTATTGATAAGACTAT-AAATCATTCAAAGT
195 TTAATC-AAAAAT-GAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * **
215850 GAGTAACTAGCCTTTC-AAGGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAACTT
258 GAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
** * * * *
215914 TTGC--TCCATGTTTCTTGAGA
322 TCACTTTTCA--TTTCCTAAGG
** * * ** *** * *
215934 TGAACATTCAATTATGATCTGTTTTACCTAAAAAAATTTTTTTTAAAATTGTTCAACGTAAAATA
1 CAAACATCCAATTATGATCTGTTTTAAC--AAAAAA-----TGAAAAAAAATTCAACTTAAAATC
** * * * * * * * * *
215999 ATTTATAAGATTATAAAATTATTGT-AAGTGCGTAATTAAT-TTGTTAAAAGCATGAATGATTGT
59 ATTTATAAGATTATAAAACCATT-TAAAGCGAGTAACTAGTCTT-TCAAAGGCATGAGTGACTAT
* * * * * * * ** ** *
216062 AAATAGACTTTTCTTATTAATTGATGGCTTTCGATTTACCTTTCCAAAGGCAAACATCCAATTCT
122 AAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTAT
* * * *
216127 GATATGTTTTGACCAAAAATAAAAAAAAAATTCAA-TCTAAAATCATTTATAAGATTATAAAACC
187 GATCTGTTTTAATCAAAAAT--GAAAAAAATTCAACT-TAAAATCATTTATAAGATTATAAAACC
* * * * * * * *
216191 ATTTGATGCTAGTAACTAGTCTTTCAAATGCATGAGTGACTGTAAATGGACTTTTCTTATCCATG
249 ATTTAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* ** * * *
216256 GATGTCTTTTGCTTCAT-ATTTCCCAAGA
314 GATGGCTTTCACTT-TTCATTTCCTAAGG
* * * * * * *
216284 AAAACATCCAATTATGATATGTTTTACCAAGAAATAAAAAAAGACATTCAACTTAAAATAATTTT
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAA-A-ATTCAACTTAAAATCATTTA
* * ** * *
216349 TAAGATTATGAAACCATTGAAAGTTAGTAACTAGTCCTTT-AAAGGCATGAGTGGCTACAAATGG
64 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTCAAAGGCATGAGTGACTATAAATGG
* * * ** ** *
216413 ACTTTT-TCTATCAATAGATGGCTTTTGATTCACATTTCCCAAGGCAATCATCCAATTATGATCT
128 ACTTTTCT-TGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCT
* * * * * * *
216477 ATTTTAGTAAAAAATGAAAAAAACATTCATCTTAAAATAATTTATATGATTATAAAACTATTTAA
192 GTTTTAATCAAAAATG-AAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * * * * *
216542 AGCAAGTAACTACTATTTTGAAAGCATGAGTGGCTATATGAATCGACTTTTCTTCTCAGTGGATG
255 AGCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATA--AATGGACTTTTCTTGTCAATGGATG
* * ** *
216607 CCTTTCGCTTCACATTTCCTAAGA
318 GCTTTCACTTTTCATTTCCTAAGG
* * * *
216631 CAAACATCTAATTATGATCTGTTTTAATAAAAAATAAAAAAAAATT-AACTTAAAATCATTTACA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * *
216695 AGATTATCAAACCATTTAAATCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * *
216760 TCTT-TAGTCAAGGGATAGTTTTTGCTTCATGTTTCTTGAGGTAAACATCAAATTATGATATATT
131 T-TTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * * *
216824 TTAA-CTAAATATAAAAAAAAATCAACTTAAAATTATTTATAAGACTAT-AAATCATTCAAAGCA
195 TTAATC-AAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* * * * * * *
216887 AGTTACTAATCTTTTGAATAG-ATGAGTGACTATAAATGGACTTTTCTTATCACTAGATGGCTTT
259 AGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
* * * *
216951 CGCTTCAT-ATTTCTTGAGG
323 CACTT-TTCATTTCCTAAGG
* * * * * *
216970 CAAATATCCAATTATGATCTGTTTTAATAACAAATGAAAAAAAACTCAA-TTTAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
217034 AGTTTATAAAACCATTTAAAGCAAGTAACTAGTATGTCGACGGCATGAGTGGCTATAAATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * ** ** * * * * *
217099 TCTCTTGTCAATAGATGGCTTTCACTTCACATCTCCTAAGGGAAACATTCAATTATAATCTGTTT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTT
* * * *
217164 GAA-CTAAAAATGAAAAACAATTTAACTTAATATCATTTATAAGATTTTAAAACCATTTAAAGCG
196 TAATC-AAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* * * ** ***
217228 -GTTAACTAG-CATTTAGAAGGCATGAGTGACAATAAATGGATTTTTCTTCCCAATGGATTTTTT
259 AG-TAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTT
** *
217291 TTGC--TTCATGTTTCCCT-ATG
322 TCACTTTTCA--TTT-CCTAAGG
* * * *
217311 TAAACATCCAATTATGATGTATTTTAACAAAAAATGAAAAAAAATTCAAGTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* ** ** * * * * **
217376 AGATTATAAAACTATTTGTATTGAGTAATTAGGCTTTCAAAAGCATGAATGACTATCTATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * ** * ** * *
217441 TTTCTTATCAATTGATGGTTTTTGCTTCACATTT-TTCAGTATAAACATCAAATTATGATCTATG
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAG-GCAAACATCCAATTATGATCTGT-
* * * * * * * *
217505 TGTAA-CAAAAAAAAGAAAAAAGAAATCAATTTAAAATCATTTTTAA-AGTTAGAAAATCACTTA
194 TTTAATC--AAAAATG-AAAAA-AATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTA
* * * * * *
217568 AAGCGAGTAACTAGGCTTTC-AATGG-ATGAATGACAATAAATAGACTTCTCTAGTCAATGGATG
254 AAGCGAGTAACTAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATG
* ** * *
217631 GATTTCACTTCACGTTT-CTCAAAG
318 GCTTTCACTTTTCATTTCCT-AAGG
* **
217655 CAAACATCCAATTATGATATGTTTTAATGAAAAATG--AAAAAATTCAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* ** * * * * **
217718 AGATTATAAAACTATTTAAAGTAAGTAACTTGTCTTTCAAGGGCATCAATGGTTATAAATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * ** ** * * *
217783 TTTCTTGTCAATGAATGGCTTTCGGTTCATATTTCCCAAGAAAAATATCC-ATTGATGATTTATT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATT-ATGATCTGTT
* * * *
217847 TTAA-CTAAAAATGAAAAAAAAAATTC-ACTTAGAATCATCTATATGATTCTAAAACCATTTAAA
195 TTAATC-AAAAATG---AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * * * * *
217910 GTGAGTAACAAGCCATTCCAGGGTAT-ACGTGACTATAAATAGA-TTTTTTTCGTCAATGGATGG
256 GCGAGTAACTAGTCTTTCGAAGGCATGA-GTGACTATAAATGGACTTTTCTT-GTCAATGGATGG
**
217973 CTTTCA--TTTCACCTTTTTTAAGG
319 CTTTCACTTTTCA--TTTCCTAAGG
* * *
217996 CAAACATCCAATTATGATATGTTTTAGCCAAAAAA-GAAAAGAAATTCAACTTAAAATCATTTAT
1 CAAACATCCAATTATGATCTGTTTTA-ACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * ** *
218060 AAGATTATAAAATCATTTAAAGCTAGTAACTAGTATTTTAAAGGCATGAGTGGGTACAAATGGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* ** ** * * * * *
218125 TTTTGTTGTTGATGGATGGCTTTCACATCGTGTTTCCTAAGGCAAGCATCCAATTATGATCTATT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * *
218190 TAAACCAAAAAT-AAAAAAAAT-AACTTAAAATCGTTTATAAGATTTTAAAAGCATTTAAAGCG-
195 TTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA
* * * * *
218252 GTTAACTAG-CATTTAGAAGGTATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGTCTTT
260 G-TAACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
** ** * *
218316 TGCTTCACATTTCTTGAGG
323 CACTTTTCATTTCCTAAGG
* * * * ****
218335 CAAACATCCAATTATCATTTATTTTAACAAAAAATG-AAAAAAGTTTGTGTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * ** *
218399 AGATTATAAATCTATTTGAAGCGAGTAATTAGACTTTCAAAGATATGAGTGACTATAGATAGG-C
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAAT-GGAC
* * * * * * * * * *
218463 TTTTTTTATAAATTGATGCCTTTTGCTTCATG-TTCTTCAGTGTAAACATCAAATTATGATTTAT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAG-GCAAACATCCAATTATGATCTGT
* * * * * * *
218527 GTGTAACCAAAAATGAAAAAAAGTCAATTTAAAATTATTTTTAA-AGTTATAAAATCATTTAAAG
194 -TTTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAG
* * * * * **
218591 CAAGTAACTAGGCTTTCAAAGG-ATGAGTGACGATAAATGGACTTCTCTAATCAATGGATGGCAT
257 CGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGC-T
* * *
218655 TT-GC--TTCACTGTCCCAAGG
321 TTCACTTTTCA-TTTCCTAAGG
* * * ** * *
218674 TAAATATCCAATTATGATATGTTTTAATGAAAAATGAATAAAAATTCAACTTAAAACCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
** * * *
218739 AGATTATAAAACCATTTAGAA-TAAGTAACTTGTCTTTCAAGGGCATGAGTGACCATAAATGGAC
66 AGATTATAAAACCATTTA-AAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * * *
218803 TTTTCTTATCAATGGATGGCTTTCGGTTCACGTTTCCTAAGGCAAACATCCAATGATAATTTGTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * *
218868 TTAACCAAAAATGGAAAAAAAATTCAACTTAGAATCATGTACAAGATTCTAAAATCATTTAAAGC
195 TTAATCAAAAAT-G-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * * * * * * *
218933 GAGTGACAAGCCATTCCAAGGCATAAGTGACCATAAATAGACTTTTTTTGTTAGTGGATGGCTTT
258 GAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
**
218998 ---TGTTTCATGTTTTTTGAA-G
323 CACT-TTTCA--TTTCCT-AAGG
* ** * * * *
219017 CAAAGATCCAATTATTTTCTATTTTAACCATAAAT--AAAAAAATTTAACTTAAAATCATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * ** * * * * *
219080 AGACTAT-AAATCATTCAAAGTAAATAGCTAGCCTTTCGAAGGCATGAGTGACTATAAATAGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
219144 TTTCTTATCAATGGATGGCTTTCGCTTCATGTTT-TTAAGGTAAAAATCTAATTATAATATGTTT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTT
* **** *
219208 TAACCAAAAATGAAAATAAAAAGGACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCGA
196 TAATCAAAAATGAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA
* * * * * *
219273 ATAACTAGTATTTTGAAGGCATGCGTGACTATAAATGGACTTCTCTAG-CAAATGGATGGCTTTC
260 GTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTC
219337 AC--TTCATGCTT-CTGAAGG
324 ACTTTTCAT--TTCCT-AAGG
* * * * * *
219355 CAAACATCCAATTATGATCTATTTTAACCAATAATAAAAAAAAATTCAACTCAAAATTATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * * *
219420 AGAGTAT-AAATCATTCAAAACGAGTAACTAGCCTCT-AGAAGGCAAGAGTGACTACAAATGGAC
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCA-AAGGCATGAGTGACTATAAATGGAC
* * * * * * * *
219483 TTCTCTAGTCAAGGGATGG-ATTT-CTTGTCATGTTTCTCAAGACAAACATCCAATTATGATGTC
130 TTTTCTTGTCAATGGATGGCTTTTGC-T-TCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* * * * * *
219546 TTTTAA-CTAAAAA-GAAAAAAAAATCAACTTAAAATCACTTAAAAGAGTAT-AAATCATTCAAA
193 TTTTAATC-AAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * *
219608 GCAAGTAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCACTGGTTGGCT
256 GCGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCT
* **
219673 TTCGCTTCACATTTCCTAAGG
321 TTCACTTTTCATTTCCTAAGG
* * * * * *
219694 TAAATATCCAACTT-TGATCTGTTTTAAGAACAAATGAAAAAAAATTCCACTTAAAATAATTTAT
1 CAAACATCCAA-TTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTAT
* * * * ** * * * * *
219758 AACATTATAAAACAATTTAAAGAGAGTAATTAGTCTTTTGAAGGAATGAATGATTGTAAATAGAC
65 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * ** *
219823 TTTTCTTGTCAATTGATAGTTTTTGATTCATGTTTCTCGAGACAAACATCCAATTATGATCTGTT
130 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * *
219888 TTAA-CTAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAATATTATAAAACTATTGAAAGC
195 TTAATC-AAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGC
* * * * * **
219952 -ATGTAACTAGACTTT-GAAAGGTATGAGTGATTATAAATGGAATTTTCTTAT-ACATGGATACC
258 GA-GTAACTAGTCTTTCG-AAGGCATGAGTGACTATAAATGGACTTTTCTTGTCA-ATGGATGGC
** * * *
220014 TTTCACTTCACGTGTCTTAAGG
320 TTTCACTTTTCATTTCCTAAGG
* * * * * *
220036 TAAACATCCAATTATGATTTGTTTTATCAAAAAGTGAAAAAAAATTCAACTTGAAATAATTTATA
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * * *
220101 AGATTATAAAACCATTGAAAGGGAGTAATTAGTCTTTCAAATGCGTGAGTGTCTATACATGGACT
66 AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * * *
220166 TTTATTGTTAATGGATGGTTTTTTCTTCATGATTTC-TCAGGCAAACATCCAATTATTATATGCT
131 TTTCTTGTCAATGGATGGCTTTTGCTTCATG-TTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * *
220230 TTAACCACAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGACTAT-AAATCATGTAAAGTGA
195 TTAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGA
* * * ** * * * **
220293 GTAACAAGCCTTTCAAAGATATGAGTGACTCTATATGGACTTTTCTTATCAATGGATGGCTTTTG
260 GTAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCA
* ** *
220358 C-TTTCCTTTTTTCAATG
325 CTTTTCATTTCCT-AAGG
* * *
220375 AAAACATCCAATTATGATCTGCTTTAACCAAAAATGAAAAAAAATTCAAC
1 CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAAC
220425 CATTTAAAGT
Statistics
Matches: 16111, Mismatches: 4009, Indels: 2433
0.71 0.18 0.11
Matches are distributed among these distances:
310 13 0.00
311 9 0.00
312 3 0.00
313 6 0.00
314 78 0.00
315 51 0.00
319 1 0.00
320 10 0.00
321 7 0.00
322 32 0.00
323 85 0.01
324 25 0.00
325 12 0.00
326 8 0.00
327 15 0.00
328 12 0.00
329 41 0.00
330 83 0.01
331 114 0.01
332 43 0.00
333 212 0.01
334 26 0.00
335 20 0.00
336 344 0.02
337 546 0.03
338 901 0.06
339 1481 0.09
340 2220 0.14
341 2886 0.18
342 2374 0.15
343 1161 0.07
344 1259 0.08
345 561 0.03
346 93 0.01
347 156 0.01
348 184 0.01
349 46 0.00
350 119 0.01
351 118 0.01
352 13 0.00
353 1 0.00
354 8 0.00
355 4 0.00
356 1 0.00
357 4 0.00
358 1 0.00
359 2 0.00
360 6 0.00
361 5 0.00
362 8 0.00
364 6 0.00
365 4 0.00
366 5 0.00
367 6 0.00
368 6 0.00
369 18 0.00
370 20 0.00
371 25 0.00
372 23 0.00
373 24 0.00
374 31 0.00
375 16 0.00
376 24 0.00
377 44 0.00
378 23 0.00
379 32 0.00
380 35 0.00
381 41 0.00
382 14 0.00
383 19 0.00
384 16 0.00
385 11 0.00
386 8 0.00
387 3 0.00
388 17 0.00
389 8 0.00
390 3 0.00
391 3 0.00
392 2 0.00
393 6 0.00
394 6 0.00
395 5 0.00
396 11 0.00
397 17 0.00
398 28 0.00
399 11 0.00
400 4 0.00
401 5 0.00
402 5 0.00
403 23 0.00
404 10 0.00
405 12 0.00
406 6 0.00
407 3 0.00
408 4 0.00
409 1 0.00
410 7 0.00
411 3 0.00
412 8 0.00
413 6 0.00
414 11 0.00
415 2 0.00
416 1 0.00
417 13 0.00
418 2 0.00
419 2 0.00
421 4 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.34
Consensus pattern (341 bp):
CAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTATA
AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGGACT
TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTT
TAATCAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAG
TAACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCAC
TTTTCATTTCCTAAGG
Found at i:200564 original size:509 final size:508
Alignment explanation
Indices: 198732--230860 Score: 10912
Period size: 510 Copynumber: 62.8 Consensus size: 508
198722 ATGGCTTGCG
* * * * * * * *
198732 CTTCATGTTTTTTGA-GACAAACATCCAATCATGATATGTTTTAGCCAAAAATGAAAAAAAAAGC
1 CTTCATGTTTCTTAAGGA-AAACATCCAATTATGATCTATTTTAACAAAAAATG-AAAAAAAA-T
* * * ** * * **
198796 TCAAATTAAAATCATTTATAAGATTATAAAACTATTTAAAGTGAGTAATTAGTCTTTTGAA-GCA
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCA
* * * * * * *
198860 TAAATGATTGTAAATCA-ACTTTTCTTATCAATTGATGGCTTTCGA-TTCACAT-TTTTC-AAGG
128 TAAGTGACTATAAAT-AGACTTTTCTTATCAATAGATGACTTTC-ACTT--CATGTTTCCTGAGG
* * * *
198921 CAAACATCCAATTATGGTCTATTTT--TAAAAAATGAAAAAAAATCTACTTAAAATTATTTATAA
189 CAAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAA
** * * * *
198984 GATTATAAAACCATTTAAATTGAGCAACTAGTATTTCAAAGGCATGAA-TGGCTATAAATGGACT
253 GATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGC-TTAAGTGACTATAAATGGACT
* * * * *
199048 TTTCTAGTTAATGGATGGATTTCACTTCACGTTTCTCAAGGCAAACATCCAATTATGTTCTG-TT
317 TTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTT
* * * * *
199112 TAACTAAACATAAAAAAAAATTCAACTTAAAATCATTTACAAGAATATAAATCATCCAAAATGAG
381 TAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAG
* * * * *
199177 TAATTAGCCTTTCGAAGGCATGAGTGACTATAAATGGAC-TGTGTTGTCAATGGATGGCTTTCA
445 TAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * *
199240 -TATCATGTTTCTTAA-GACAAACATCTAGTTATG-TCCCA-TTTAAC-CAAAATGAAAAAAAAA
1 CT-TCATGTTTCTTAAGGA-AAACATCCAATTATGAT-CTATTTTAACAAAAAATGAAAAAAAAT
* ** * * * * * * * * * ** *
199300 T-AGCTTAAAATCATCGATTATATTTTAAAACCATTTACAGCGACTGACTAGTATGTGGAAGGTA
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCA
* * * * *
199364 TAAGTGACTATAAATGGACTTTTCTTACCAATGGATGATTTTCACTTCATGCTTCCCT-AGGCAA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATG-TTTCCTGAGGCAA
*
199428 ACATCCAATTATGATCTATTTTAACAAAAAATATAAAAAAATCAACTTAAAATCATTTATGAGAT
192 ACATCCAATTATGATCTATTTTAACAAAAAATA-AAAAAAATCAACTTAAAATCATTTATAAGAT
** * * * * *
199493 TATAAATTCATTTAAATCGAGTAACTAGTATTTCGAACGCATGAGTGACTATATATGGA-TTTCT
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTT-T
* * * * * * *
199557 CTAGTCAATGGATGGCTATCACTTCACATTTTCAAAGACAAATATCTAATTATGAT-TTTTGTTC
320 CTAGTCAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATATGTT-TTA
** * * *
199621 ACAAAAAATGAATAAAAGGTTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAG
383 ACAAAAAAT-AA-AAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAG
* * * * * * * * * *
199686 TAATTAGTCTTCCGAAGGCCTAAATGAGTGTAAATGGAC-TATTCTTGTCAATTGATAGGCTTTG
445 TAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTA-TCTTGTCAATGGAT-GACTTTC
199750 A
508 A
* ** * * *
199751 -TGCACCTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAACAAATTTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAA-AAAATTC
* ** *
199814 AACTTAAAATTATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGGCTTTCAAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * ** *
199879 AGTGACAATAAATAGACTTTTCTTGTTAATGGATTG-C-TTCTGCTTCATGTTTCCCAAGGCAAG
130 AGTGACTATAAATAGACTTTTCTTATCAATAGA-TGACTTTC-ACTTCATGTTTCCTGAGGCAAA
* * * *
199942 CATCCAATTATGATCTGTTTTGATC-AAAAATGAAAAAAATTCAACTTAAAGTCATTTATAAGAC
193 CATCCAATTATGATCTATTTT-AACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGA-
* ** * *
200006 TT-TAAAACCATTGAAAGCGAGTAACTAGGCTTTCGAAGG-TATGAGTAACTATAAATGGACTTT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGACTTT
* * * **
200069 TTTTGTTAATGGATGGCTTTCACTTTTCATTTCCTAAGGCAAACATCCAATTATGATATGTTTTA
319 TCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTTTA
* * *
200134 ACAAAAAATAAAAGAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCTTTAAATTGAGTA
383 ACAAAAAATAAAA-AAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGTA
** * * * * ** * *
200199 ACTAGTATTTTGGAGGCATGAGTGA-TGTAAATACACTTATCTAGTTAATGGATGAC-TTCTA
447 ACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTC-A
* ** * * *
200260 CTTCATGTTTCTTAAGGAAAATATTTAATTATGATCTATTTTAACCAAAATTGAAAGAAAATTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * *** *
200325 ATTTAAAATCATTTATAAGATCATAATATCATTTAAAGAAAGTAATTAACCTTTCGAAGGCATAA
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATAA
* * * * ** * *
200390 G-GTACTATAAATAGAC-TTTCTCATCAGTAGATGGCTTTCTCTTCATGTTTTTTGAGACAAAAA
131 GTG-ACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAACA
* *
200453 TCAAATTATGATCTATTTTAACAAAAAATAAAAAACAATCAACTTAAAATCATTTATAGGATTAT
195 TCCAATTATGATCTATTTTAACAAAAAATAAAAAA-AATCAACTTAAAATCATTTATAAGATTAT
* * *
200518 AAATCCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTAACTATAAATGGACTTCTCTAG
259 AAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCTAG
* * * * *
200583 TCAATGGATAGCTTTCTCTTCACATTTTTCAAGGCAAACATCCAATTATGTTCTGTTTTAACTAA
324 TCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTTTAAC-AA
* * * **
200648 AAATTAAAAAAAATT-AACTTAAAATCATTCACAAGATTGTAAATGATTCAAAATGAGTAACTAG
387 AAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGTAACTAG
* * * * *
200712 CCTTTTGAAGGTATAAGTGACTATAAATGGACTTTTCTTGTCAATGAATGACTTTCC
452 CCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * *
200769 CTTCATGTTTCTCAAGAAAAATATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAAATTG
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATG-AAAAAAAATTC
* ** * *
200834 AACTTAAAATCATTTATAAGATTTTAAAA-CATTGAAAGTTAGTAACTAGTATTTAAAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * *
200898 AGTAACTATAAATGGGCTTTTCTTATCAATAGATAATTTTCACTTTACAT-TTT-TTGAGGCAAA
130 AGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCAC-TT-CATGTTTCCTGAGGCAAA
* *
200961 CATCTAATTATGATCTATTTTAACAAAAGAAT-AAAAAAATCAACTTAAAATCATTTATAAAATT
193 CATCCAATTATGATCTATTTTAACAAAA-AATAAAAAAAATCAACTTAAAATCATTTATAAGATT
* * * *** * * * *
201025 ACAAAACCATTTGAAGCGAGTAATTAGGCCTTCAAAGGCATAAATGACTATAAATGGAATTTTCT
257 ATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCT
* ** * * * *** * * *
201090 TGTCAATAAATGGCTTTCACTTGACGTTTTCCAACATAAATATCAAATTATGATATGTGTTAACA
322 AGTCAATGGATGGCTTTCACTTCAC-ATTTCTAAGGCAAACATCCAATTATGATATGTTTTAACA
* * * *
201155 AAAAAT-AAAAAAA-TCAATTTAAAATTATTTTTA-AAG-TTACAAAATCACTT-AAAACGAGTA
386 AAAAATAAAAAAAATTCAACTTAAAATCA--TTTACAAGATTATAAAA-CA-TTCAAAATGAGTA
* * * * * * * * *
201215 ACAAGGCTTTCAAAGGCATTAA-TGACTATTAATGGACTTTTGTT-ACAAATGAATGGCTTTCA
447 ACTAGCCTTTCGAAGGCA-TAAGTGACTATAAATGGACTTATCTTGTC-AATGGATGACTTTCA
** * * * * * *** *
201277 CTTCACATTTC-TAGAGGTAAACATCAAATTATGATATGTTGTAGTGAAAAATGAAAAGAAATTC
1 CTTCATGTTTCTTA-AGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * ** * * ** **
201341 AACTCT-AAACCATTTATAAGATTATAAAACTATTTAAAGTGAGTAATTAATATTTTGAAGATAT
65 AACT-TAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * ** ** * *
201405 AAGTGGCTATAAATGGACTTTTCTTGTCAATAGAT-AGCTTTTGCTTCACATTTCTTAAGGTC-A
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGA-CTTTCACTTCATGTTTCCTGAGG-CAA
* * * *
201468 ACATCCAATTATGATCTATTTGAGCCAAAAATAAAAAATAATTTAACTTAAAATCATTTATAAGA
192 ACATCCAATTATGATCTATTTTAACAAAAAATAAAAAA-AA-TCAACTTAAAATCATTTATAAGA
* ** * * * ** *
201533 TTTTAAAACCATTTAAAATGACTAACTAGTATTTCGAAGGCATGAGTGACTGCAAATGAACTTTT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTT
* ** * ** ** ** * * *
201598 CTTGTGGAGGGATGATTTTTGCTTCATGTTTCATAAGGAAAACATCCAATTATGATCTATTTTAA
320 CTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTTAA
* * * * **
201663 CAAAAAATAAAAAAAAATTTAAGTTAAAAATTATTTACATGATTATAAAACCATT-AGAAGCGAG
384 CAAAAAAT-AAAAAAAATTCAACTT-AAAATCATTTACAAGATTATAAAA-CATTCA-AAATGAG
* * ** * * * * **
201727 TAATTAGACTTTTAAAGGCATAAATGACTATAAATGAACTTTTCTTGTCAATTGATGACTTTTG
445 TAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * * *
201791 CTTCATGTTT-TCCAATGCAAACATCAAATTATGATCTATGTGTAACAAAAAATGAAAAAAAAAG
1 CTTCATGTTTCT-TAAGGAAAACATCCAATTATGATCTAT-TTTAACAAAAAATG-AAAAAAAAT
* * * * ** * **
201855 TGAACTTAAAACCATTTTTAAGGTTATAAAATAACTT-AAAGCGAGTAACTAG-GCTTCTAAAGG
63 TCAACTTAAAATCATTTATAAGATTATAAAACCA-TTGAAAGCAAGTAACTAGTATTTC-AAAGG
* * * * * ** ** *
201918 -ATGAGTGTCTATAAATGGACTTTTC-TAGTCAATGGATGGCTTTTGCTTCACATTT-CTCAAGG
126 CATAAGTGACTATAAATAGACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCT-GAGG
** * * ** *
201980 TGAACATCCAATTATGATTTTTTTTAATGAAAAATGAAAAAAAAATTCAACTTAAAATCATTTAC
189 CAAACATCCAATTATGATCTATTTTAACAAAAAAT--AAAAAAAA-TCAACTTAAAATCATTTAT
** * * * *
202045 AAGATTATAAAACCATTTAATA-TAAGTAACTTGTCTTTC-AAGGGCATAAGTGAGTATAAATGG
251 AAGATTATAAAACCATTTAA-AGCGAGTAACTAGTATTTCGAA-GGCTTAAGTGACTATAAATGG
* * * * * ** ** * * ** *
202108 ACTTTTTTTGTTAATGAATGACTTTCGGTTCATGTTTCTCTAGGCAAACATTCAACAATGATTTG
314 ACTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATG
*** * * * * *
202173 TTTTATTGAAAAATAAAAAAAAATCAACTTAGAATCATTTACAAGATTCTAAAATCATTTAAAGT
378 TTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* * * ** * * * *
202238 GAGTAACAAGCCATTCCAAGATATAAATGACTATAAATGGACTTTTCTTGTAAATGGATGGCTTT
442 GAGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTT
202303 CA
507 CA
* * * * * * *
202305 TTTCATGTTT-TTCACGGCAAGCATCCAATTATGATATGTTTTAACCAAAAAA-GAAAAGAAATT
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTATTTTAA-CAAAAAATGAAAAAAAATT
* * *
202368 CAA-TGTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAA-TAACTAGTATTTCGAAGGC
64 CAACT-TAAAATCATTTATAAGATTATAAAACCATTGAAAG-CAAGTAACTAGTATTTCAAAGGC
* * * * * * *
202431 ATGAA-TGTCTATAAATGGACTTTTCTTGTCAATGGAT-AGCTATAACTT--TGCATTTCCTAAG
127 AT-AAGTGACTATAAATAGACTTTTCTTATCAATAGATGA-CTTTCACTTCATG--TTTCCTGAG
* * * * * * *
202492 GCGAACATCCAATTATGATCTGTTTGAGCTAAAAATAAAAATAAAGTTAACTTTAAATCATTTAT
188 GCAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAA-AAA-TCAACTTAAAATCATTTAT
* * * * * * *
202557 AAGATTTTAAAACCATTTAAAACG-GCTAACTAGTATTTAGAAGTCATGAGTGACTATAAATAGA
251 AAGATTATAAAACCATTTAAAGCGAG-TAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGA
* *** * * * * * *
202621 CTTTTTTTA-TCAATGGATCATTTTTACTTTACGTTTCATGAGGCAAACATCCAATTATGATCTA
315 C-TTTTCTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATG
* * * * * ** **
202685 TTTTAAC-TAAAATAAAAAAACTTCAAGTTAAAATCATTTATATGATTATAAAACCATTTGAAGC
378 TTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* * * ** * * * * *
202749 AAGTAATTAGGCTTTTAAAGGCATGAA-TAACCATAAATGGACTTTTGTTGTCAATTGATGACTT
442 GAGTAACTAGCCTTTCGAAGGCAT-AAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTT
202813 TCA
506 TCA
* * * * * * * *
202816 CTTTACGTTT-TTTAGTGTAAACATCAAATTATGATCTGTGTGTAACAAAAAATGAAAAAAAAGT
1 CTTCATGTTTCTTAAG-GAAAACATCCAATTATGATCTAT-TTTAACAAAAAATGAAAAAAAATT
* * * * *
202880 CAATTTAAAATCAGTTT-TAA-AGTTATAAAATCACTT-AAAGCGAGTAACTAGTATTTTAAAAG
64 CAACTTAAAATCA-TTTATAAGA-TTATAAAACCA-TTGAAAGCAAGTAACTAGTATTTCAAAGG
* * * * *
202942 CGTGAGTGGCTATAAATAGA-TATTT-TTAATCAATGGATGACTTTTACTTCACT-TTTCCT-AT
126 CATAAGTGACTATAAATAGACT-TTTCTT-ATCAATAGATGACTTTCACTTCA-TGTTTCCTGA-
* * *** *
203003 TGCAAACATCCAATTATGATCTATTTGAGTTAAAAATGAAAAAAAAAGTTAACTTAAAATCATTT
187 GGCAAACATCCAATTATGATCTATTTTAACAAAAAAT--AAAAAAAA-TCAACTTAAAATCATTT
* * * * * * * *
203068 ATAAGATTTTAAAACTATTTAAGGCG-GTTAACTAGCATTT-GAAAGGCATGACTAACTATAAAT
249 ATAAGATTATAAAACCATTTAAAGCGAG-TAACTAGTATTTCG-AAGGCTTAAGTGACTATAAAT
** ** * * *
203131 GGACTTTTCTTA-TCAATGGATGATTTTTGCTTCACATTTCTCGAGGAAAACATCCAATTATAAT
312 GGACTTTTC-TAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGAT
* * * * * * * * **
203195 GTATTTTAACAAAAAATGAAAACAAGTCAAGTTAAAATCATTTATATGATTATAAAACCATTTGA
375 ATGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAA
** * * * * * * ** *
203260 AGCGAGTAATTAGGCTTTCAAAGGAATAAATGACTATAAATGGA-TATTTCTCATCAATCGATGA
439 AATGAGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACT-TATCTTGTCAATGGATGA
*
203324 CTTTCG
503 CTTTCA
* * * * * * * * *
203330 CTTAACGTTT-TTCTATGTAAACATCAAATTATGATCAATGTGTAACAAAAAATGAAACAAAAGT
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTAT-TTTAACAAAAAATGAAA-AAAAAT
* * * * * **
203394 T-AATTTAAAATTATTT-TAA-AGTAATAAAATCACTT-AAAGCGAGTAACTAGGCTTTCAAAGG
63 TCAACTTAAAATCATTTATAAGA-TTATAAAACCA-TTGAAAGCAAGTAACTAGTATTTCAAAGG
* * * ** ** ** *
203455 -ATGAGTGACTATAAAT-GTACTTCT-TTAGTCAATAGATGGCTTTTGCTTCACATTTTTTAAGG
126 CATAAGTGACTATAAATAG-ACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCTGAGG
* * * * * * *
203517 CAAACATCCAATTATGACCAATTTTAATGAAAAATTAAAAACAATTGAACTTAAAATCGTTTATA
189 CAAACATCCAATTATGATCTATTTTAA-CAAAAAATAAAAA-AAATCAACTTAAAATCATTTATA
* * * * * * * *
203582 AGATTATAAAACTATTTAAAG-GAAGCAACTTA-TCTTTC-TAGGGTATGAGTGAATATAAATAG
252 AGATTATAAAACCATTTAAAGCG-AGTAAC-TAGTATTTCGAAGGCT-TAAGTGACTATAAATGG
** *** * * ** *
203644 ACTTTTC-ATGTGTATGGATGGCTTTTGGTTCACATTTTCCAAGGAAAACATCCAACGATGATTT
314 ACTTTTCTA-GTCAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATAT
** * * * * * ** *
203708 GTTTT-ATGAAAAATGAAAAACAATTCAACTTAGAGTCATATAGAAGATTCCAAAACCATTTAAA
377 GTTTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAA
* * * * * * * *
203772 GCT-AGTAACAAGACATTCCAAGGCATAAGTGGCTATAAATGGACTTTTCTTGTCAATGGATGGC
440 -ATGAGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGAC
203836 TTTCA
504 TTTCA
* * * * *
203841 TTTCATGTTT-TTCAAGGAAAACATCCAATTATAATATGTTTTAACTAAAAAT-AAAAAATAATT
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAA-AATT
* * * * **
203904 CAACTCAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAAGGCAT
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * * * * * * * **
203969 GAGTGCCTATAAATGGACATTTCTTGTCAATGGATGGCTTTCGACTT-ATGTTTTCTAAGAAAAA
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTC-ACTTCATGTTTCCTGAGGCAAA
* * * * * * * * * *
204033 CATCTAAGTATAAGCTGTTTGAGCTAAAAATGAAAAATAAAATTTAACCTAAAATCATTTATAAG
193 CATCCAATTATGATCTATTTTAACAAAAAAT--AAAA-AAAA-TCAACTTAAAATCATTTATAAG
* ** * *
204098 ACTATAAAACCATTTAAAATGAGTAACTAGCATTTCGAAGGCATT-AGTGACTATAAAT-GAATT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGC-TTAAGTGACTATAAATGGACTT
* * * * ** ** * * *
204161 TGTTTTGTCAATGGAAGGCTTTCGCTTCGTATTTCCTAAACCAAATATACAATTATGATCTGTTT
318 T-TCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTT
* * * ** * * * * * *
204226 GAGCCAAACGTGATAAAAAATTTAACTTGAAATCATTTATAAGATTTTAAAACCATT-TAAA-GC
381 TAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATG-
** * * * * * * * *
204289 AGCTAACTAGTATTTCAAAGGCACAAGTGACTGTACATGGACTTCTCTAGTCAAGGGATGGCTTT
443 AG-TAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTT
*
204354 CG
507 CA
** * * * * *
204356 CTTCACATTTCTTGAGGCAAACATCCAATTATGATATGTTTTAACCAAAAAT-AAAAAAATATT-
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAA-ATTC
* * * * * ** ** *
204419 AACTTAAAAACATTTATAAGACTAT-AAATCATTTAAAGCGAGTAACTAGCCTTTTGAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * ** * * * *
204483 AGTGGCTATCAATGGACTTTT-TCTATCAATTGACAACTTTCGCTTTACAT-TCTT-C-AATGTA
130 AGTGACTATAAATAGACTTTTCT-TATCAATAGATGACTTTCAC-TT-CATGT-TTCCTGAGGCA
* * * * * *
204544 AACATCGAATTATGATCGT-TGTGTAACAAAAAATGAAAAAAAAATTGAATTTAAAATTATTTTT
191 AACATCCAATTATGATC-TAT-TTTAACAAAAAAT--AAAAAAAA-TCAACTTAAAATCATTTAT
* ** * * * * * * *
204608 AA-AGTTCTAAAATAATTTAAAGCGAGTAACTA-TGCTTTCAAAAG-ATGAGTGACCATAAATGT
251 AAGA-TTATAAAACCATTTAAAGCGAGTAACTAGT-ATTTCGAAGGCTTAAGTGACTATAAATGG
* * * * ** * * *
204670 ACTTTTTTAGTCAATAGATGGCTTTTACATCATGTTTCTTGAGGAAAACATTCAATTATGATATG
314 ACTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATG
* * * * * * ***
204735 TTTTAACTAAAAATAAAAAAATTTCAACTTAAAATCATTTATAAGACTATAAATCATTTAAAGCA
378 TTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATG
* * * * * * *
204800 AGTAAATAGCCTTTTGAAGGCATGAGTGGCTATAAATGGACTT-TTTCTATCAATTGAT-AGCTT
443 AGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCT-TGTCAATGGATGA-CTT
*
204863 TCG
506 TCA
* ** * * ** *
204866 CTTTA-CATTCTTCAATGTAAACATTGAATTATGATCGT-TGTGTAACAAAAAATGAAAAAAAAA
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATC-TAT-TTTAACAAAAAATG-AAAAAAAA
* * * * * * * **
204929 GTGAATTTAAAATTATATT-TAA-AGTTCT-AAACTCATTTAAAGCGAGTAACTAGGCTTTCAAA
62 TTCAACTTAAAATCAT-TTATAAGA-TTATAAAAC-CATTGAAAGCAAGTAACTAGTATTTCAAA
* * * * * * *
204991 AG-ATGAGTGACCATAAATATACTTTT-TTAGTCAATGGAT-AGCTTTTACTTCATGTTTCTTGA
124 GGCATAAGTGACTATAAATAGACTTTTCTTA-TCAATAGATGA-CTTTCACTTCATGTTTCCTGA
* * * * * * * * *
205053 GGGAAACATCCAATTATGATTTGTTTTAATGAAAAATTAAAACAATTCAACTCAAAATCTTTTAT
187 GGCAAACATCCAATTATGATCTATTTTAA-CAAAAAATAAAAAAAATCAACTTAAAATCATTTAT
** * * * *
205118 AAGATTATAAAACCATTTAAAGTAAATAACTTGTCTTTC-AAGGGCATAAGTGACTATAAATGGA
251 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAA-GGCTTAAGTGACTATAAATGGA
* * * * * ** * * * *
205182 CTTTTGTTGTCAATGGATAGCTTTTAATTCATGTTTCTCGAGCCAAACATCCAATGATGATTTGT
315 CTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGT
* * * * * * **
205247 TTTAACTAAAAATAAAAAAAATTCAGCTTAGAATCATCTACAAGATTCTAAAACCATTTAAAGCG
379 TTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATG
* * * * * * *
205312 AGTAACAAGCCATTCTAAGGCAAAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT
443 AGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTC
*
205377 G
508 A
* * * * ** * * *
205378 TTTTACGTTTTTTAAGGCTAACATCCAATTATGATATGTTTTAATCAAAAAA-G-AAAAGAATTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAA-CAAAAAATGAAAAAAAATTC
* * *** * * * *
205441 AACTTAAAATTATTTATAAGATTATAAAACCATTTAAAATGAGTAATTGGTATTTTAAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * **
205506 AGTGACTATAAAT-GAACATTTCTTATCAATGGATGGCTTTCAC-TCTATGTTTTCTAATACAAA
130 AGTGACTATAAATAG-ACTTTTCTTATCAATAGATGACTTTCACTTC-ATGTTTCCTGAGGCAAA
* * * * * * * * * *
205569 TATCCAGTTCTAATCTATTTGAGCCAAAAAGTTAAAAAAAAATTAACTTAAAATCTTTTACAAGA
193 CATCCAATTATGATCTATTTTA-ACAAAAA-AT-AAAAAAAATCAACTTAAAATCATTTATAAGA
* * * * * *
205634 TTTTAAAACCATTTAAAGCG-GCTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACTTC
255 TTATAAAACCATTTAAAGCGAG-TAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTT
* * * * * *
205698 TCTAGTCAA-GGATAGCTTTCACTTCACATTTTTAGATGCAAACATCTAATTATGATGTCTTTTA
319 TCTAGTCAATGGATGGCTTTCACTTCACATTTCTA-AGGCAAACATCCAATTATGATATGTTTTA
* * * * ***
205762 A-ACAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAG-TCTATAAATCTTTTAAAGCAAGT
383 ACA-AAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGAT-TATAAAACATTCAAAATGAGT
* ** * ** * *
205825 AATTAGCCTTTTC-AAGGCACGAGTGACTATAAATGGACTTCTCTTACCAATTGAT-AGCTTTTA
446 AACTAGCC-TTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CTTTCA
* * * * * ** *
205888 TTTCATGTTT-TTCAGTGTAAACATCGAATTATGATCGATGTGCAACAAAAAATGAAAACAAAAG
1 CTTCATGTTTCTTAAG-GAAAACATCCAATTATGATCTAT-TTTAACAAAAAATGAAAA-AAAAT
* * * * * * ** *
205952 TGAATTTAAAATTATTTTTAA-AGTTATAAAATCACTT-AAAGCGAGTAACTAGGCTTTTAAAGG
63 TCAACTTAAAATCATTTATAAGA-TTATAAAACCA-TTGAAAGCAAGTAACTAGTATTTCAAAGG
* * * * * * * * *
206015 -ATGAGTGACTATTAATGGACTTCTC-TAGTCAATGGATGGCTTTCGCTTCACGTTT-CTCAAGG
126 CATAAGTGACTATAAATAGACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCT-GAGG
* * * *
206077 CAAACATTCAATTATTATCTATTTTAATGAAAAATGAAAAAAAAAACTCAACTTAAAAAT-ATTT
189 CAAACATCCAATTATGATCTATTTTAA-CAAAAA--ATAAAAAAAA-TCAACTT-AAAATCATTT
* *** * * * *
206141 ATAAGATTGTAAAACCATTTAAATTAAGTAACTTGTCTTTC-AAGGGTATAAGTGACTATAAATA
249 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATG
* * ** *** ** * * *
206205 GAC-TTTCTTGTCAATAGATGATTTTTGGTTCATGTCTTCTAAGGAAAACATCAAATGATGAT-T
313 GACTTTTCTAGTCAATGGATGGCTTTCACTTCACAT-TTCTAAGGCAAACATCCAATTATGATAT
* * * ** * *
206268 TTTTCTAACTAAAAATGAAAAAAGAAATTCAACTTAGAATCAGCTACAAGATTCTAAAACTATTT
377 GTTT-TAACAAAAAAT--AAAAA-AAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTC
* * * * * *
206333 AAACCT-AGTAACAAG-CTATTCCATGGCATAAGTGACTATAAATGGACTTTTCTTATCAATGGA
437 AAA-ATGAGTAACTAGCCT-TTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGA
*
206396 TGGCTTTCA
500 TGACTTTCA
* * * * * *
206405 TTTCATGTTT-TTCAAGGCAAACATCTAATTATGATATGTTTTAACCAAAAAA-GAAAAGAAATT
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTATTTTAA-CAAAAAATGAAAAAAAATT
* * * * ** *
206468 CAACTTAAAATTATTTATAAGATTATAAAACTATTTAAAGCGAGTAACTAGTATTTTGAGGGCAT
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * * * * * *
206533 AAGTGGCTCTAAATGGACTGTTCTTGTCAATGGATGGCTATCACTT--TGCTTTTCCTGAGGCAA
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATG--TTTCCTGAGGCAA
***
206596 ACATCCAATTATGATCTA-TTTAAGTGAAAAT-AAAAAAAT-AACTTAAAATCATTTATAAGACT
192 ACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGA-T
* * * * *
206658 T-TAAAACCATTTAAAACGATTAACTAGTATATCGAAGGCATAAGTGACTATAAATGGACTTCTC
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTC
* * * * *
206722 TAGTCAAAGGTTGGCTTTCGCTTCACAATTTTTTGAGGCAAACATCCAATTATGATATGTTTTAA
321 TAGTCAATGGATGGCTTTCACTTCAC-A-TTTCTAAGGCAAACATCCAATTATGATATGTTTTAA
* * * * * * *
206787 CCAAAAATAAAAAAATTTCAACTGAAAATCATTTATATGATTACAAAACCATT--TAA--AGTAA
384 CAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAGTAA
* * ** * * **
206848 CTTGTCTTTC-AAGG-ATATTAGTGGTTATAAATGGACTTTTCTTGTCAATGGAT-AGTTTTTG
448 CTAGCCTTTCGAAGGCATA--AGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CTTTCA
* * * * * * * *
206909 GTTCAT-ATT-TTCAGAGACAAACATCTAATGATGAT-TTTTTTAACCAAAAATAAAAAAAAAAT
1 CTTCATGTTTCTTAAG-GA-AAACATCCAATTATGATCTATTTTAACAAAAAAT-GAAAAAAAAT
* * * * * * * ** *
206971 TCAACTTAGAATGATCTACAAGATTCTAAAACTATTTAAAGTGAGTAACAAGCTATTTC-AAGGC
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAG-TATTTCAAAGGC
* * * * * *** ** *
207035 ATAAGTGACTATAGATGGACTTTTCTTCTCATTGGAT-AGCTTTTGTTTCATGTTTTTTTAGGCA
127 ATAAGTGACTATAAATAGACTTTTCTTATCAATAGATGA-CTTTCACTTCATGTTTCCTGAGGCA
* * * * * *
207099 AACATCCAAATATGATATGTTTTAACCAAAAAATAAAAGAAATTCAACTTAAAACCACTTATAAG
191 AACATCCAATTATGATCTATTTTAA-CAAAAAATAAAA-AAAATCAACTTAAAATCATTTATAAG
* * * * * *
207164 ATTATAAAACCATTTAAAGCGAGTAACTAGCATTTAGAAGGCATGAGTGACTATTAATGGGCTTT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTT
* * * ** * * * * * * *
207229 TCTTGTCAATAGATGGCTTTCGCTTTGCATTTTTCGAGCCAAATATACAATTATGATCTGTTTGA
319 TCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTTTA
* * * * * * * * * * **
207294 GCTAAACATGAAAACAAATTTAACTTGAAATCATTTATAAGATTTTCAAACCATTTAAAGCG-GT
383 ACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTAT-AAAACATTCAAAATGAG-
* ** * * * * * **
207358 TAACTTGTATTTCGAAGGTATAAGTGACTATAAATGGACTTCTCTAGTCAAGGGATGGCTTTTG
445 TAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * * *
207422 CTTCATATTTCTTAAGGCAAACATCCAATTATGATATGTTTTAACCAAAAAT-AAAAAAATTTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * ** ** * *
207486 A-TTAAAAATCATTTATAAGACTAT-AAATCATTTAAAGTGAGTAACTAGCCTTTCGAAGGCATG
66 ACTT-AAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
** * * ** * * *
207549 AGTGGTTATAAATAGACTTTT-TCTATCAATTGA-CAGCTTTTGCTTCA-CTTTCCTTA-ACATA
130 AGTGACTATAAATAGACTTTTCT-TATCAATAGATGA-CTTTCACTTCATGTTTCCTGAGGC--A
** * * * * * *
207610 AACATTGAATTATGATCGATGTGTAAAAAAAAATGAAAAAAAAGTGAATTTAAAATCATTTTTAA
191 AACATCCAATTATGATCTAT-TTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAA
* ** * * * *
207675 -AGTTATAAAATCATTTAAAGCGAGTAACTAGGCTTTCAAAGG-ATGAGTGACCATAAATGGACT
253 GA-TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACT
* ** * * *
207738 TCTCTAGTCAATGGATGGCTTTTGCTTCACATTTCTCAAGGGAGACATCCAATTATGATCTGTTT
317 TTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTT
*** * * ** * *
207803 TAATGCAAAATGAGAAAAAAATT-AACTTAAAATCATTTATAAAATCTA-AAATTATTTAAAGT-
381 TAACAAAAAAT-A-AAAAAAATTCAACTTAAAATCATTTACAAGAT-TATAAAACATTCAAAATG
* * * * * * * * *
207865 ATGCAACTTGTCTTTC-AAGGGCATGAGTTACTATAAATGGACTTTTCTTATGAATGGATGGCTT
443 A-GTAACTAGCCTTTCGAA-GGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTT
207929 TCA
506 TCA
* * * * ** * * ** *
207932 GTTCACGTTTCCTAAGAAAAACATCCAACGATGAT-TTTTTTTATGAGAAATGAAAAACAAATTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAA-AAATTC
* * * * * * * * ** * * *
207996 AACTTAGAGTCATCTAGAAGATTCTAAAACTATTTAAAGCGAGTAAGAAGCCA-TTCCAAGACAT
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAG-TATTTCAAAGGCAT
* * * * * *
208060 AAGTGACTATAAAT-GAACTTTTCTTATCAATGGATGGCTTTTATTTCATGTTT-TTCAAGGCAA
129 AAGTGACTATAAATAG-ACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCT-GAGGCAA
* * * * * *
208123 ACATCCAATTATGATATGTTTTAACTAAAACATAAAAAAATTTCAACTTAAAGTCATTCATAAGA
192 ACATCCAATTATGATCTATTTTAAC-AAAAAATAAAAAAA-ATCAACTTAAAATCATTTATAAGA
* * * * *
208188 TTATAAAACTATTTAAAACGAGTAACTAGCATTTCG-AGGCATGAGTG-CTTATAAATGGA-TAT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGAC-TATAAATGGACT-T
* * * * * * * ** *
208250 TTCTTGTCAATGGATGGTTTTTACCTGACGTTTCCTAAGGCAAACATCCAATTATAAGCTGTTTG
318 TTCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTTT
* * * ** * *
208315 AGCCAAAAATAAAAAAAAATT-AACTTAAAATCATTTATAAGCCTATAAAACATCCAATTATGA-
382 AACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAA-AATGAG
* * * ** * ** *
208378 T--CTA---TTT-TAA--CAAAAAATGAAAACAAATTCAAGTTAAAATCATT-T--AT--ATGA-
445 TAACTAGCCTTTCGAAGGC-ATAAGTGACTATAAA-TGGACTT---ATC-TTGTCAATGGATGAC
*
208429 TTACAA
504 TTTC-A
** * * * * ** **
208435 AATCA---TT-TGAAGG--GA-GT--AATTA-GA-CT-TTTAAAGTTATGAATGACTATAAACAA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAA-CAAAAAATGA--A-AAA-AA
** * * * * * * ** *
208488 ACTT-TTCTTGTCAATTAATGACCTTTGCTTCACGTTTTTCAGTGCAAA-CA-TCAAATTATG-A
61 A-TTCAAC-T-T-AA--AAT--CATTT--AT-AAG--ATT-A-T-AAAACCATTGAAAGCAAGTA
** * * ** * * * * * * * *
208549 TTTTTGTGTAACCAAAAATGAGAAAAAGGTCAATTTAAA-ATTATTTTTAAAGTTAT-AA-A-AT
110 -ACTAGTAT-TTC--AAA-G-GCATAA-GTGACTATAAATA-GACTTTT---CTTATCAATAGAT
* * * * * * * * * * *
208610 CACTTAAAGCAAGTAATTAGGCTTT--TAAAGG-ATAA-GTGGCTATATATGGA-CT-TCTCTAG
164 GACTT---TC-ACT--TCATG-TTTCCT-GAGGCA-AACAT-CCAAT-TAT-GATCTAT-TTTAA
* * * ******** * * ** ** *** * * * *** *
208669 TAAATGGATTGCTTTTGCTTAATGTTTCTCGAGGCAAACATCCA-ATTATGATATGTTTTAATGC
216 CAAA--AAATAAAAAAAATCAA---CT-TAAAATCATTTAT-AAGATTATAAAACCATTTAAAGC
* * ** * * * ** * * ** ** * ** * **
208733 AAAATGAA--AAAAATTC-AA--CTTAA--AACCATTTATAAGA-TTATAAAACCATTTAAAGTA
274 -GAGT-AACTAGTATTTCGAAGGCTTAAGTGACTATAAAT-GGACTTTTCTAGTCAATGGATGGC
** * ** ** * * * * * ** *
208790 AGTAACTT-ATC-TTTC-AAGGGTATTAGTGACTATAAATGAAATTTTCTTGTC----AATAAAT
336 TTTCACTTCA-CATTTCTAAGGCAAACA-T-CCAAT-TATGATATGTT-TTAACAAAAAATAAAA
**** * * * * * * *
208848 GGCTTTCGA-TT--GA-CATTTACCAAG----GAAAACATCCAACGATGA-T---TTG--TTT-T
396 AAAATTCAACTTAAAATCATTTA-CAAGATTATAAAACATTCAA-AATGAGTAACTAGCCTTTCG
* ** * ** ** ** *
208898 AATGG-A-AAATGAAAAAAAAAATTTAACTTAGAATCATT-TACAAGATTTTAAAACTATTTA
459 AA-GGCATAAGTG--ACTATAAA-TGGACTT---ATC-TTGT-C-A-A-TGGATGACT-TTCA
*** ** * * * * * * ** ***
208958 AAGCAAGTGATAAGCCATTCCAAGGCATAA-GTGACTATAAATGGA-CTTTTCTTGTCAACCGAT
1 CTTC-A-TG-T--TTC-TT--AAGG-AAAACAT-CCAAT-TAT-GATCTATT-TTAACAAAAAAT
******* * * ** * **
209021 GACTTTTGTTTCACGTTTTTCATTGCAAACATCTAATTATGATCTATTTTAACAAAAAATT-AAA
53 GAAAAAAAATTCA------AC-TT--AAA-ATC-ATTTAT-A-AGATTAT-A-AAACCATTGAAA
** * * ** * * **
209085 AAAATTCAACTTAAAATCATTT-ATAAGATTATAA-AG-CTATTGAAAGCGAGTAAC-TGACATT
103 GCAAGT-AAC-T--AGT-ATTTCA-AAG-GCATAAGTGACTA-T-AAA--TAG--ACTTTTC-TT
*
209146 -TCAATGGTATGAGTGACTATAAATGCGCTTCTCTAGTCAATGAATGGCTTTCGCTTCACGTTTC
154 ATCAA---TA-GA-TGAC------T----TTCACT--TC-----AT-G-TTTC-C-T---G----
* * * * * ** * * * *
209210 TCCAGACAAACATTCAATTTTGATATGTTTTAATTGAGAATTAAAACAATTCAACTTAAAATCAT
186 ---AGGCAAACATCCAATTATGATCTATTTTAA-CAAAAAATAAAAAAAATCAACTTAAAATCAT
* * * * * *
209275 TTATAAGATTTTAAAACTATTTAAAGCGACTAACTAGTATTTAGAAGGCATGAGTGACTATAAAT
247 TTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAAT
* * ** *** * * * * *
209340 AGG-CTTTTCTTGTCAATGAATGATTTTTGTTTCACGTTTTCTGAA-GCACATAACCAATTACGA
312 -GGACTTTTCTAGTCAATGGATGGCTTTCACTTCAC-ATTTCT-AAGGCAAACATCCAATTATGA
* * * * * * *
209403 TCTGTTTTAACCAAAAATAAAAACAATTCAACTTAAAATCATTTATAAGATTTTAAAACCGTTTA
374 TATGTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCA
* * * * * * * * ** ** * * *
209468 AAGTGA-TGAAGTAGACTTTCAAAAGCATGAGTGGCTAT-AA--G--TTTTAATGAAAAAGAAAA
438 AAATGAGT-AACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATG-GAT
* **
209527 AAAATTCA
501 GACTTTCA
** * * ** * * * *
209535 TCATAAAATCATTT-ATAAGATTGTAAAATCATTTAAAGCTA-GTAACTTATCTTTTAAGGGAAT
1 -C-T-TCAT-GTTTCTTAAG---G-AAAA-CA-TCCAA-TTATG-ATC-TA--TTTTAA--CAAA
* * ** * * * * * *
209598 GAATGACTATAAATATACTTTTATTGTCAATGGATGGC-TTTCGCTTCACGTTTCCCCAGGAAAA
49 AAATGA--A-AAA-A-AATTCAACT-T-AA--AAT--CATTT---AT-AAGATT----A-TAAAA
* * * * * * * * * * ***
209662 ACA-TCAAATG--A-TGATTTGT-TTT--AA-CCAAAAATGA-AAAAAATCA-ACTTAAATTCAT
94 CCATTGAAA-GCAAGTAACTAGTATTTCAAAGGCATAAGTGACTATAAAT-AGACTTTTCTT-AT
* * *** *** * ** *
209717 CTATA-A-GA-TTATAAAACCAT-TAAAAAC-G-GGTAAGAAGCCATTCCAAGGCATGA-CTGAC
156 CAATAGATGACTT-TCACTTCATGT--TTCCTGAGG-CA-AA--CA-TCCAA-TTATGATCT-AT
* **** ***** * * ** * ** ** *
209775 TATAA-ATGGACTTTTATTTTTAATGGATGGCTTTTGATTCACATTTCCCAAG-GCA-AACATCC
211 TTTAACA---AAAAATAAAAAAAAT-CA--AC-TTAAAAT--CATTT-ATAAGATTATAA-AACC
* * * * * * * *** * ** * *
209837 AATTATGATCTATTTTAACTAGAAATGAAAAAG-AAAATTGACTTAAAATCATGTATAAGA-TTT
265 ATTTA-AAGCGA--GTAACTAGTATTTCGAAGGCTTAAGTGAC-TATAA--ATG-----GACTTT
** ** ** * * * * * ** * * * *
209900 TAAAACCATATAAAACGAC--TAAC-TAATATTTGGAAGGCATAA-GTGACTATAAATGGACT-T
319 TCTAGTCA-AT-GGATGGCTTTCACTTCACATTTCTAAGGCA-AACAT-CCAAT-TAT-GA-TAT
* *** ******* * * *
209960 TTTTTATA-AATGGATGATTTTTTGCTTC-GCGTTCCCATGGCAAAGAACCAATTATA-ATATAT
377 GTTTTA-ACAAAAAAT-A-AAAAAAATTCAAC--T----T----AA-AATC-ATT-TACA-AGAT
* * * * * * ** ** ** * * *
210022 TTTAACAAAAATTGAAAATAATTCAACTTAAAATCAATTATAAGATTATAA--AACCATTTGAAG
425 TAT-A-AAACATTCAAAATGAGT-AAC-T---AGCCTTTCGAAG-GCATAAGTGA-C-TAT-AAA
* * ** *
210085 GGAGTAACTTATCTT-TCAAGGGCAT-A-AGTGA
479 TG-G--ACTTATCTTGTCAATGG-ATGACTTTCA
* * * * *** * * * * * **
210116 CTATAATGGACTTGTCAATGGATGCCTTTTGC-TTTATGTTTCCCGAGGCAAACATCCAATGATG
1 CT-TCAT-G-TTTCTTAA-GGAAAAC--ATCCAATTATG-AT--C----TATT------------
* * **
210180 AATTTTTTTAACCAAAAATGAAAAAAAATTTCAACTTAAAATCATCTA-AATGATTCCAAAACCA
41 -------TTAACAAAAAATGAAAAAAAA-TTCAACTTAAAATCATTTATAA-GATTATAAAACCA
* ** * * * * * * *
210244 TTTAAAGCGGGTAACAAGCCA-TTCCAAGGCATGAGCGACTATAAATGGACTTTT-TCTATTAAT
97 TTGAAAGCAAGTAACTAG-TATTTCAAAGGCATAAGTGACTATAAATAGACTTTTCT-TATCAAT
* * ** * ** * * * * * *
210307 GGATGGCTTTTGCTTCATATTTCCCAAGGCAAACATCCAATTATAATATGTTCTAACCAAAAGTA
160 AGATGACTTTCACTTCATGTTTCCTGAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATA
* * * * * * *
210372 AAAAAAAGTTTAA-TTCAAAATCATTTATAAGGTTTTAGAA-CATTAAAAGCGATTAACTAGTCT
225 AAAAAAA--TCAACTT-AAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTAT
* * * * **
210435 TTCGAAGGCATGAGCGACTATAAATGGACTTTTCTTA-TCAATGGATGACTTTTGCTTCACATTT
287 TTCGAAGGCTTAAGTGACTATAAATGGACTTTTC-TAGTCAATGGATGGCTTTCACTTCACA-TT
* * * * *
210499 TTTGAGGTAAAAATCCAATTATGATATGTTGTAACAAAAAATGAAAAAAAAATTCAACTTAAAAT
350 TCTAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAAT--AAAAAAAATTCAACTTAAAAT
* * * * *** *
210564 CATTTATACGATTATAAAACCATTGC-AAGTGAGTAATTAATATTTCGAAGGTATAAGTGACTAT
413 CATTTACAAGATTATAAAA-CATT-CAAAATGAGTAACTAGCCTTTCGAAGGCATAAGTGACTAT
* * ** **
210628 AAATAGACTTTTCTTACCAATGGACT-ACTTTTG
476 AAATGGACTTATCTTGTCAATGGA-TGACTTTCA
* * * * ** ** *
210661 CTTAATGTTTCTCAAGGCAAATATCCAATTATGATCTGCTTTAATGAAAAATGAAAAACAATTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * * *
210726 ACTAAAAATCGTTTATAGGATTATAAAAAC-GTGTAAAGGC-AGTAAGT--TACCTTCCAAGAGT
66 ACTTAAAATCATTTATAAGATTATAAAACCATTG-AAA-GCAAGTAACTAGTA-TTTCAAAG-GC
* * * * * * * * *
210787 ATGAGTGACTATAAATGGACTTTTCATGTCAATGGATGACTTTCGCTTCACGTTT-TTAAAGGCA
127 ATAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCT-GAGGCA
* **
210851 AACATCCAATTATGATCTGTTTTAACCCAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGA
191 AACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAA-TCAACTTAAAATCATTTATAAGA
* * * * * * ** *
210916 TTTTAAAA-CAATAAAAGCGAGTAACTAGTCTTTCAAAGG-TGTGAGCAACTATAAATAGACTTT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGACTTT
* * * * * *
210979 TCTTGTCAATGGATGGCTTTCACTTCACATTTTCTAAGGTAAACATCTAAATATGATCTATTTTA
319 TCTAGTCAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATATGTTTTA
* * * **
211044 AC------CAAAAAAAA-TCAACTTAAAATCATTTATAA-ATTTATAAATCATTCAAAGCGAGTA
383 ACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGA-TTATAAAACATTCAAAATGAGTA
* * * * *
211101 ACTAGCCTTTCGAAGGCATGAGAGACTATAAGTAGACTT-TACTTGTCAATGGATGGCTTTCA
447 ACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTAT-CTTGTCAATGGATGACTTTCA
** * * ** * *
211163 CTTCACATTTCCTAA-GACAAATATATAATTATGATCTGTTTTAGCAAAAAAT-AAAAACAAGAT
1 CTTCATGTTTCTTAAGGA-AAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAA-AA-AT
* * * *
211226 TCAACTCAAAATCATTTATAAGATTATGAAACCATTTAAATG--AGTAACTAGCATTTCGAAA-G
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAA-GCAAGTAACTAGTATTTC-AAAGG
* * * * * * * ** *
211288 CATGAGTGGCTATAAATAAACTTTTCTTGTCAATGGATGGCATTCGTTTCACGTTT-CTAGAGGC
126 CATAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCT-GAGGC
* * * * *
211352 AAACATCCAATTATGATATGTTTTAACGAAAAATGAAAAAAAAATCAACTAAAAATCATTTACAA
190 AAACATCCAATTATGATCTATTTTAACAAAAAAT--AAAAAAAATCAACTTAAAATCATTTATAA
* * * * * * *
211417 GATTATAAAACCATTTAAAGCGAGTTAGTAATATTTTGAAGGCATGAGTGACTATAAATAGACTT
253 GATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTT
* ** * * * *
211482 TTCTTA-TCAATGGATGGCTTTCGCTTCATGTTTCTTAAGGTAAGCATCCAATGATGATTTGTTT
318 TTC-TAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTT
* * * * *
211546 TAACCAAAAATGAAAGAAAAATTCAACTTAAAATCA-TT-CAA-A--GT--GAC---GAACA--A
381 TAACAAAAAAT-AAA-AAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGA
* * * * * *
211599 G----TA---TTTCGAAGGTATAAGTGACTATAAATAGACTTTTCTTATCAAAGGATGATTTTCA
444 GTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* ** ** * * * *
211657 CATT-ACGTTTCTCCAGCTAAATATTCAATTATTATCTATTTTAAC---------AAAAAAATTA
1 C-TTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * * * ** ** *
211712 AAATTAAAATCATTTATAAAATTACAAAACCATTTAAAGTAAATATTTAGGCTTTCGAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT-
* * * * * * * * *
211777 AA-TGACTATAAATAGACTTTGTTTTGTCAATTGATGGCTTCCACTTCATGTTTTCTCATGTAAA
129 AAGTGACTATAAATAGACTTT-TCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* * * * * *
211841 CATCAAATTATGATATGTTTT-A-AAAAAATAAAAAAAATTAATTTAAAATCATTTTTAA-AGTT
193 CATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGA-TT
* * * * * * * * * *
211903 ATAAAATCAATTAAAGTGAGT-ACCAATGCTTTCAAAGGCATAAGTGCCTATAAATAGACTTTTC
257 ATAAAACCATTTAAAGCGAGTAACTAGT-ATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTC
* * ** * * * * *
211967 TTGT-AAGTGGATAGCTTT-TGTT-ATATGTTTCTCAAGGAAAACATCCAATTATGATCTATTTC
321 TAGTCAA-TGGATGGCTTTCACTTCACA--TTTCT-AAGGCAAACATCCAATTATGATATGTTTT
* *** * *
212029 AAGTGAAATTTTTTTTAAAAAAAAAGGTTCAACGTAAAATTCATTTATAAGATTATAAAACCATT
382 AA--CAAA----AAAT-AAAAAAAA--TTCAACTTAAAA-TCATTTACAAGATTATAAAA-CATT
* * * * * * * *
212094 TAAAGTGAGTAATTAG-TTTGTTGAAGGCATGAA-TCA-TAGT-AATGGAACTTTTCTTATCAAT
436 CAAAATGAGTAACTAGCCTT-TCGAAGGCAT-AAGTGACTA-TAAATGG-ACTTATCTTGTCAAT
* *
212155 TGATGGCTTTCA
497 GGATGACTTTCA
* * ** * * ** * * * * *
212167 ATTAACCTTTCTTGAGGCAAACATCCAAACATGATTTGTTTTGATC-AAAAATGAAAAACAATTT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTT-AACAAAAAATGAAAAAAAATTC
* * * * * * * *
212231 TACTTAAAATCATTTATCAGATTATAAAACCATTAAAAGTGAA-TAACAAGTCTTTCGAAGGTAT
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAG-CAAGTAACTAGTATTTCAAAGGCAT
* * * * * ** ** ** *
212295 GAGTGATTATAAAT-GAACTTTTCTTGTCTAT-GAATGGCTTTTGCTTCACATTTCCCAAGGAAA
129 AAGTGACTATAAATAG-ACTTTTCTTATCAATAG-ATGACTTTCACTTCATGTTTCCTGAGGCAA
* * * * *
212358 ACATCCAATTATAATCTATGTTATCAAAAAATGAAAAAAAATCAACTTAAAATAATTTATATGAT
192 ACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGAT
* * * * * * * *
212423 TATGAAACCATTGAAA-TGAGTAACTAG-ACCTTT-AAAGGCATGCATGAGTGGCTACAAATAGA
256 TATAAAACCATTTAAAGCGAGTAACTAGTA--TTTCGAAGGC-T---TAAGTGACTATAAATGGA
* * * ** *
212485 CTTTTGTTA-TCAATAGATGGATTTTGCTTCACATTTCTCAAGGTAAACA-CTCAATTATGATAT
315 CTTTT-CTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATC-CAATTATGATAT
* * *
212548 GTTTT----AAAAA-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAG
377 GTTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAA
* ** * * * * * ** * * *
212608 CGAGTAACTAGTATTTTGAAAGTATGAGTGGCTATATAAATAAACTTTTCTTATCAATGGATGGC
441 TGAGTAACTAGCCTTTCGAAGGCATAAGTGAC--TATAAATGGACTTATCTTGTCAATGGATGAC
**
212673 TTTTG
504 TTTCA
* * * * * * *
212678 CTTCACG-TTCATGAGGCAGACATCCAATTATGATATATTTTAACAAAAAATGAAACAAAA-TCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * *
212741 ACTTAAAATCATTTACAAGATTATAAAATCATTTAAATCGAGTACCTAGTATTTTGAAA-GCATG
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTA-TTTCAAAGGCATA
* * * * * * * * *
212805 AGTGACTATAAATGGACTTCTC-TAGTCAATGGATGGCTTTCATTTCATATTTCTTTAGACAAAC
130 AGTGACTATAAATAGACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAAC
* * * * * *
212869 ATTCAATTATGAT-T-TGTTTAACTAAAAATAAAATAAATTTAACTTAAAATCATTTATATGACT
194 ATCCAATTATGATCTAT-TTTAACAAAAAATAAAA-AAAATCAACTTAAAATCATTTATAAGATT
* * * ** * *
212932 AT-AAATCATTCAAAGTGAGTAACTAGCCTCTT-AAAGG-TATGAGTGACTATAAATGGACTTTT
257 ATAAAACCATTTAAAGCGAGTAACTAGTAT-TTCGAAGGCT-TAAGTGACTATAAATGGACTTTT
* * * * *
212994 CTTA-TCTAATGCATAGCTTTCACTACA-AGTTATCCAAGACAAACATCCAATTATGATATGTTT
320 C-TAGTC-AATGGATGGCTTTCACTTCACA-TT-TCTAAGGCAAACATCCAATTATGATATGTTT
* * * * * *
213057 TAGCCAAAAATGAAAAAAAAATTCAATTTCAAATCATTTTCAAGATTATAAAACCATTAAAAATG
381 TAACAAAAAAT--AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATG
* * * * * * * * * * *
213122 AGTAGCTAGGCTTTCAAAGGCATAAGAGACTATAAATGGATTTTTCATCTTAATGGATGGCTTTT
443 AGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTC
213187 A
508 A
* * * * * *
213188 CTTCATGTTTCTTGAGGCAAACATCCAATTATGAACT-CTTAAGACTAAAAAA-GAAAAAAATTT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTA-AC-AAAAAATGAAAAAAAATT
* * * * ** * *
213251 TAACTTAAAATTATTTATAAGATTATAAAACCATATGAACGCGAGTAACTAGGCTTTCGAAGGTA
64 CAACTTAAAATCATTTATAAGATTATAAAACCAT-TGAAAGCAAGTAACTAGTATTTCAAAGGCA
* * * ** * **
213316 TAAGTGACTATAAATAGACTTTCCTTATCAATGGATGGCTTTTGCTTCAGGTTTGATGAGGCAAA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* * ** * *
213381 CATCCAATTATGATATGTTTTAATGAAAAATGAAAAAAAATTCAACTCAAAATAATTTATAAGAT
193 CATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAAGAT
* * * * * * * * *
213446 TATAAAATCATTAAAAGTGAGTAACTAGTCTTTCAAAGG-TATGAGTGGCTATAAGTGGACTATT
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGACTTTT
* * ** * ** * * **
213510 CTTGTTAATACATAGCTTTTGCTTCACATTTCTTAAGGCAAACATCTACTTATGATCCGTTTTAA
320 CTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTTAA
** * ** * *
213575 TGAAAAATGAAGAAAAATTCAACTTAAAATCATTTGTAAGATTATAAAACCATTTAAAGTGAGTA
384 CAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAGTA
* ** * * ** * * * *
213640 ATTAGTATTTCGAAGGCATGAGTGGCTATAAATAAACTTTTCTAGTC--TGCGAATGGCTTTTA
447 ACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATG-G-ATGACTTTCA
* * *
213702 CTTCATGTTTC-TAGAGGAAAACATCCAATTATGATTTGTTTTAACTAAAAAT-AAAAAAAATT-
1 CTTCATGTTTCTTA-AGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * * * * *** *
213764 AACTTATAATTATTTATAAGACTAT-AAATCTTTCAAAGCGAGTAACTAACCTTTC-AAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * ** *
213827 AGTGACTGTAAGTGGACTTTTCTTATCAATTGATTG-CTTTCAGTTCA-CCTTGCTCGAGGCAAA
130 AGTGACTATAAATAGACTTTTCTTATCAATAGA-TGACTTTCACTTCATGTTTCCT-GAGGCAAA
* * ** * ** *
213890 TATCAAATTATGATCCGTTTTAATC-AAAAGTGAAAAAAGTTCAACTTAAAATCAGTTATAAGAT
193 CATCCAATTATGATCTATTTTAA-CAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGAT
* * * * * * * * *
213954 TATAAAATCATTGAAATCGAATAACTAATATTTCAAAGGCATGAA-TGACTATATATGAACTTTT
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGC-TTAAGTGACTATAAATGGACTTTT
* ** ** * * * *
214018 CTTGTCAATGGATGG-TTGTTGCTTCATGTTCCT--TG---AGA--CAATTATGATCTAGTTTTA
320 CTAGTCAATGGATGGCTT-TCACTTCACATTTCTAAGGCAAACATCCAATTATGATAT-GTTTTA
* * * * * *
214075 GCTAAAAGTTAA-AAAAAAAAGGTTCAACATAAAATAATTTATAAGATTATAAAACCATTTAAAG
383 AC-AAAA---AATAAAAAAAA--TTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAA
* * * * * * * * * * *
214139 TGAGTAAATAG-TTTGTTGAAGGCATGAA-TGATTGTAAATGGACTTTTTTTATAAATTGATGGC
441 TGAGTAACTAGCCTT-TCGAAGGCAT-AAGTGACTATAAATGGACTTATCTTGTCAATGGATGAC
*
214202 TTCCA
504 TTTCA
* * ** * * * * *
214207 ATTAACCTTTCCTAAGGCAAATATCCAATTATGA--TATGTTTGACAAAAAAAT-AAAAAAAACT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTAT-TTTAAC-AAAAAATGAAAAAAAATT
* * * ** * * *
214269 GAACTTAAAATCATTGATAAGATTATAAAATCATTGAAAGCGGGTAACTAGTCTTTCGAACGCAT
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * * * * *
214334 AAGTGACTATGAA-CGAACTTTTCTTGTCTATGGAT-AGCTTTTC-CTTTATGTTT-CTCAAGGC
129 AAGTGACTATAAATAG-ACTTTTCTTATCAATAGATGA-C-TTTCACTTCATGTTTCCT-GAGGC
** ** * *
214395 AAGTATCCAATTATGATCTATTTTATGAAAAAATAAAAAAAAAGTTTCAACCTAAAATAATTTAT
190 AAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA---TCAACTTAAAATCATTTAT
* * * * * ** * * * * ***
214460 AAGATTATAAAACCACTGAATGTGAGTAAATAGTCCTTCAAAGG-TATTAGTGGCTACAAATATT
251 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGA
* * * *
214524 CTTTTTCT-GTCAATGGATAGCTTTTACTTCACATTTTCCAAGACAAACATCCAATTATGATATG
315 C-TTTTCTAGTCAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATATG
* * * * * * *
214588 TTTTAATAACAAATTAAAAACAATTCAACTTAAAATCATTTATAAGGTTATAAAACTATTTAAAG
378 TTTTAACAA-AAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAA
** ** * ** ** * * * *
214653 CAAGTAACTAGTATTTTGAAGGCATGGGTGGTTGTATGAATGGACTTTTCTTGTCAATCGATGGC
441 TGAGTAACTAGCCTTTCGAAGGCATAAGT-G-ACTATAAATGGACTTATCTTGTCAATGGATGAC
*
214718 TTTCG
504 TTTCA
** * * * * **
214723 CTTCAAATTTCCTAAGGCAAACATCCAATTATGATCT-GTTTAACTAAAAAT--AAAAAAATAAA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * ** * ** * * *
214785 ACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGTGAGTGACTAGCCTTTTAAAGGTATGA
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATAA
* ** * * * *
214849 GTGACTATAAATGGACCTTTT-TTATTTGATGGATGGCTTTTGCAATATAAT-TTT--TGAGAG-
131 GTGACTATAAATAGA-CTTTTCTTA-TCAATAGATGAC-TTT-CACT-TCATGTTTCCTGAG-GC
* * * *
214909 AAACATCCAATTATGATATGTTTTAGCAAAAAATGAAAAACAATTCAAAC-TAAAATCATTTATA
190 AAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAA-AAATC-AACTTAAAATCATTTATA
* * ** * * * ** *
214973 AGATTATAAAACCATTGAAAGTGAGTAA-TCAGGCTATCGATGGCATAAGTGACTATAAATAAAT
252 AGATTATAAAACCATTTAAAGCGAGTAACT-AGTATTTCGAAGGCTTAAGTGACTATAAATGGAC
* * ** ** * ** *
215037 TTTTCTTGTCAATTGATGGCTTTTGCTTCATGTTTCCTAAGGCAAACATCCAACTATGACCTATT
316 TTTTCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTT
* * * * * * *
215102 TTGACCAAAAATGAAAACAGTTCAACTTAATATCATTTATAAGATTATAAAATCA-TCTAAAA-G
380 TTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTC-AAAATG
* * * * * * *
215165 CATTGAATTAGGCTTTCGAAGGCATGAGTGACTATAAAAT-GACTT-TCAGTATCAACGGAT-AG
443 -AGT-AACTAGCCTTTCGAAGGCATAAGTGACTAT-AAATGGACTTATC-TTGTCAATGGATGA-
**
215227 CTTTTG
503 CTTTCA
* * * * **
215233 CTTCATGTTTCTTGAGGTAAACATCCAATTGTGATCTGTTTTAATGAAAAATG-AAAAAAATTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * *
215297 ACTTAAAATAATTTATAAGATTATAAAATCTTTGAAAGCGAGCAACTAGT-TCTTCAAAGGCATG
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTAT-TTCAAAGGCATA
* * * * * * * ** * * * **
215361 AGTGGCTATAAGTGGACTATTCTTATGAATGGATGGCTTTTGCTTCA-GTGTGCTCAAGGTGAAC
130 AGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCT-GAGGCAAAC
* ** ** * *
215425 ATCCATTTATGATCCGTTTTAATGAAAAATGAAAAAAAACTTCAACTCAAAACCATTTATAAGAT
194 ATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA--TCAACTTAAAATCATTTATAAGAT
* ** * * *
215490 TATAAAACTATTTGGAGCGAGTAACTAGTATTTCAAAGGCATAAGTGGCTATAAATGGACTTTTC
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTC
** * * ** *** * * *
215555 TTTTGAAAGGATGGCTTTGGCTTCTTGTTTCCTGAGGTAAACATCCAATTATAATATGTTTTAAC
321 TAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTTTAAC
* * *
215620 AAACAATGAAAAAATAATTTAACTTAAAATCATTTACAAGATTATAAAACCATT-TAAATCGAGT
385 AAAAAAT-AAAAAA-AATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT-GAGT
* ** * * * * * * *
215684 AGCTAGTATTTCGAAGACATGAGTGACAATAAATGGACTTCTCTAGGCAATGGATGGCTTTCA
446 AACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * * *
215747 CTTCATGTTTCTCAAGGAAAACATCCAATTATGATATCTTTTAACTAAAAATAAAAAAAAACTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * ** ** * *
215812 ACTTAAAATTATTGATAAGACTAT-AAATCATTCAAAGTGAGTAACTAGCCTTTCAAGGGCATGA
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATAA
* * * ** * * ***
215876 GTGACTATAAATGGACTTTTCTTATCAATGGATAACTTTTGCTCCATGTTTCTTGAGATGAACAT
131 GTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAACAT
* * * **** * *
215941 TCAATTATGATCTGTTTTACCTAAAAAAATTTTTTTTAAAATTGTTCAACGTAAAATAATTTATA
196 CCAATTATGATCTATTTTAAC--AAAAAA-------TAAAAAAAATCAACTTAAAATCATTTATA
** * * * * ** * * * * *
216006 AGATTATAAAATTATTGT-AAGTGCGTAATTAAT-TTGTTAAAAGCATGAA-TGATTGTAAATAG
252 AGATTATAAAACCATT-TAAAGCGAGTAACTAGTATT-TCGAAGGC-TTAAGTGACTATAAATGG
* * * * * *
216068 ACTTTTCTTA-TTAATTGATGGCTTTCGA-TTTACCTTTCCAAAGGCAAACATCCAATTCTGATA
314 ACTTTTC-TAGTCAATGGATGGCTTTC-ACTTCACATTT-CTAAGGCAAACATCCAATTATGATA
* * *
216131 TGTTTTGACCAAAAATAAAAAAAAAATTCAA-TCTAAAATCATTTATAAGATTATAAAACCATT-
376 TGTTTT-AACAAAAA-ATAAAAAAAATTCAACT-TAAAATCATTTACAAGATTATAAAA-CATTC
** * * * * * * * *
216194 -TGATGCTAGTAACTAGTCTTTCAAATGCATGAGTGACTGTAAATGGACTTTTCTTATCCATGGA
437 AAAATG--AGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGA
* **
216258 TGTCTTTTG
500 TGACTTTCA
* ** * * * * * *
216267 CTTCATATTTCCCAAGAAAAACATCCAATTATGATATGTTTTACCAAGAAATAAAAAAAGACATT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAA-A-ATT
* * * ** *
216332 CAACTTAAAATAATTTTTAAGATTATGAAACCATTGAAAGTTAGTAACTAGTCCTTT-AAAGGCA
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGT-ATTTCAAAGGCA
* * * * * * ** **
216396 TGAGTGGCTACAAATGGACTTTT-TCTATCAATAGATGGCTTTTGA-TTCACATTTCCCAAGGCA
128 TAAGTGACTATAAATAGACTTTTCT-TATCAATAGATGAC-TTTCACTTCATGTTTCCTGAGGCA
* ** * * *
216459 ATCATCCAATTATGATCTATTTTAGTAAAAAATGAAAAAAACATTCATCTTAAAATAATTTATAT
191 AACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAA-A-TCAACTTAAAATCATTTATAA
* * * * * * * * *
216524 GATTATAAAACTATTTAAAGCAAGTAACTACTATTTTGAAAGCATGAGTGGCTATATGAATCGAC
253 GATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATA--AATGGAC
** * * * * * *
216589 TTTTCTTCTCAGTGGATGCCTTTCGCTTCACATTTCCTAAGACAAACATCTAATTATGATCTGTT
316 TTTTCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTT
* * *
216654 TTAATAAAAAATAAAAAAAAATT-AACTTAAAATCATTTACAAGATTATCAAACCATT-TAAATC
380 TTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTAT-AAAACATTCAAAAT-
** * * * * *
216717 GAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTCT-TTAGTCAAGGGAT-AGTT
442 GAGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTT-GTCAATGGATGA-CT
**
216780 TTTG
505 TTCA
* * * * * * *
216784 CTTCATGTTTCTTGAGGTAAACATCAAATTATGATATATTTTAACTAAATAT-AAAAAAAAATCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * *
216848 ACTTAAAATTATTTATAAGACTAT-AAATCATTCAAAGCAAGTTACTAATCTTTTGAATA-G-AT
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGT-ATTTCAA-AGGCAT
* * * * * * * *
216910 GAGTGACTATAAATGGACTTTTCTTATCACTAGATGGCTTTCGCTTCATATTTCTTGAGGCAAAT
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAAC
* * * * * *
216975 ATCCAATTATGATCTGTTTTAATAACAAATGAAAAAAAACTCAA-TTTAAATTATTTATAAGTTT
194 ATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAAGATT
* * * * * * *
217039 ATAAAACCATTTAAAGCAAGTAACTAGTATGTCGACGGCATGAGTGGCTATAAATGGACTTCTCT
257 ATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCT
* * * * * * * * *
217104 TGTCAATAGATGGCTTTCACTTCACATCTCCTAAGGGAAACATTCAATTATAATCTGTTTGAACT
322 AGTCAATGGATGGCTTTCACTTCACAT-TTCTAAGGCAAACATCCAATTATGATATGTTTTAACA
* * * * * * **
217169 AAAAATGAAAAACAATTTAACTTAATATCATTTATAAGATTTTAAAACCATTTAAAGCG-GTTAA
386 AAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAG-TAA
* * * * * * ** *** **
217233 CTAGCATTTAGAAGGCATGAGTGACAATAAATGGATTTTTCTTCCCAATGGATTTTTTTTG
448 CTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * *
217294 CTTCATGTTTCCCT-ATGTAAACATCCAATTATGATGTATTTTAACAAAAAATGAAAAAAAATTC
1 CTTCATGTTT-CTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * ** * ** *
217358 AAGTTAAAATCATTTATAAGATTATAAAACTATTTGTATTG--AGTAATTAGGCTTTCAAAAGCA
65 AACTTAAAATCATTTATAAGATTATAAAACCA-TTG-AAAGCAAGTAACTAGTATTTCAAAGGCA
** * * ** ** ** * * **
217421 TGAA-TGACTATCTATGGACTTTTCTTATCAATTGATGGTTTTTGCTTCACATTT-TTCAGTATA
128 T-AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAG-GCA
* * * * *
217484 AACATCAAATTATGATCTATGTGTAACAAAAAAAAGAAAAAAGAAATCAATTTAAAATCATTTTT
191 AACATCCAATTATGATCTAT-TTTAAC--AAAAAA-TAAAAA-AAATCAACTTAAAATCATTTAT
* * * ** * * * *
217549 AA-AGTTAGAAAATCACTTAAAGCGAGTAACTAGGCTTTC-AATGGATGAA-TGACAATAAATAG
251 AAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAA-GGCTTAAGTGACTATAAATGG
* * * *
217611 ACTTCTCTAGTCAATGGATGGATTTCACTTCACGTTTCTCAAAGCAAACATCCAATTATGATATG
314 ACTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATG
** * * * *
217676 TTTTAATGAAAAAT-GAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAGT
378 TTTTAACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAAT
* * * ** * * *
217740 AAGTAACTTGTCTTTC-AAGGGCATCAA-TGGTTATAAATGGACTTTTCTTGTCAATGAATGGCT
442 GAGTAACTAGCCTTTCGAA-GGCAT-AAGTGACTATAAATGGACTTATCTTGTCAATGGATGACT
*
217803 TTCG
505 TTCA
* * ** * * * *
217807 GTTCATATTTCCCAAGAAAAATATCC-ATTGATGATTTATTTTAACTAAAAATGAAAAAAAAAAT
1 CTTCATGTTTCTTAAGGAAAACATCCAATT-ATGATCTATTTTAACAAAAAATG--AAAAAAAAT
* * * * * ** * * * * *
217871 TC-ACTTAGAATCATCTATATGATTCTAAAACCATTTAAAGTGAGTAACAAGCCA-TTCCAGGGT
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAG-TATTTCAAAGGC
* * * * * * ** ** *
217934 ATACGTGACTATAAATAGA-TTTTTTTCGTCAATGGATGGCTTTCATTTCACCTTTTTTAAGGCA
127 ATAAGTGACTATAAATAGACTTTTCTT-ATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCA
* * * * *
217998 AACATCCAATTATGATATGTTTTAGCCAAAAAAGAAAAGAAATTCAACTTAAAATCATTTATAAG
191 AACATCCAATTATGATCTATTTTA-ACAAAAAATAAAA-AAAATCAACTTAAAATCATTTATAAG
* * ** * * ** *
218063 ATTATAAAATCATTTAAAGCTAGTAACTAGTATTTTAAAGGCATGAGTGGGTACAAATGGACTTT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTT
* * ** * *** * * * *
218128 TGTTGTTGATGGATGGCTTTCACATCGTGTTTCCTAAGGCAAGCATCCAATTATGATCTATTTAA
319 TCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTTTA
* * * * * **
218193 ACCAAAAATAAAAAAAA-T-AACTTAAAATCGTTTATAAGATTTTAAAAGCATTTAAAGCG-GTT
383 ACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAG-T
* * * * * * * * **
218255 AACTAGCATTTAGAAGGTATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGTCTTTTG
446 AACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
** * * * * * **
218318 CTTCACATTTCTTGAGGCAAACATCCAATTATCATTTATTTTAACAAAAAATG-AAAAAAGTTTG
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
** * * * * **
218382 TGTTAAAATCATTTATAAGATTATAAATCTATTTG-AAGCGAGTAATTAG-ACTTTCAAAGATAT
66 ACTTAAAATCATTTATAAGATTATAAAACCA-TTGAAAGCAAGTAACTAGTA-TTTCAAAGGCAT
* * * * * * * ** * * *
218445 GAGTGACTATAGATAGGCTTTTTTTATAAATTGATGCCTTTTGCTTCATG-TTCTTCAGTGTAAA
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAG-GCAAA
* * * * * * * *
218509 CATCAAATTATGATTTATGTGTAACCAAAAATGAAAAAAAGTCAATTTAAAATTATTTTTAA-AG
193 CATCCAATTATGATCTAT-TTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGA-
* * ** * * * * *
218573 TTATAAAATCATTTAAAGCAAGTAACTAGGCTTTCAAAGG-ATGAGTGACGATAAATGGACTTCT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTT
* * * * * *
218637 CTAATCAATGGATGGCATTT-GCTTCAC-TGTCCCAAGGTAAATATCCAATTATGATATGTTTTA
320 CTAGTCAATGGATGGC-TTTCACTTCACAT-TTCTAAGGCAAACATCCAATTATGATATGTTTTA
** * * * * * *
218700 ATGAAAAATGAATAAAAATTCAACTTAAAACCATTTATAAGATTATAAAACCATTTAGAATAAGT
383 ACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAGT
* * * * * * * *
218765 AACTTGTCTTTC-AAGGGCATGAGTGACCATAAATGGACTTTTCTTATCAATGGATGGCTTTCG
446 AACTAGCCTTTCGAA-GGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * * * * * *
218828 GTTCACGTTTCCTAAGGCAAACATCCAATGATAATTTGTTTTAACCAAAAATGGAAAAAAAATTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAAT-GAAAAAAAATTC
* * * * * * * * * * *
218893 AACTTAGAATCATGTACAAGATTCTAAAATCATTTAAAGCGAGTGACAAGCCA-TTCCAAGGCAT
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAG-TATTTCAAAGGCAT
* * * * * * * *** ** * *
218957 AAGTGACCATAAATAGACTTTTTTTGTTAGTGGATGGCTTTTGTTTCATGTTTTTTGAAGCAAAG
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAAC
** * * * * *
219022 ATCCAATTATTTTCTATTTTAACCATAAATAAAAAAATTTAACTTAAAATCATTTATAAGACTAT
194 ATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGATTAT
* * ** * * ** * * *
219087 -AAATCATTCAAAGTAAATAGCTAGCCTTTCGAAGGCATGAGTGACTATAAATAGACTTTTCTTA
259 AAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTC-TA
* ** * * * * * *
219151 -TCAATGGATGGCTTTCGCTTCATGTTTTTAAGGTAAAAATCTAATTATAATATGTTTTAACCAA
323 GTCAATGGATGGCTTTCACTTCACATTTCTAAGGCAAACATCCAATTATGATATGTTTTAACAAA
*** * * ** *
219215 AAATGAAAATAAAA-AGGACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCGAATAACT
388 AAAT-AAAA-AAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAGTAACT
** * ** * * *
219279 AGTATTTTGAAGGCATGCGTGACTATAAATGGACTTCTCTAG-CAAATGGATGGCTTTCA
450 AGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTC-AATGGATGACTTTCA
* * * * * *
219338 CTTCATGCTTCTGAAGGCAAACATCCAATTATGATCTATTTTAACCAATAATAAAAAAAAATTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * ** *
219403 ACTCAAAATTATTTATAAGAGTAT-AAATCATTCAAAACGAGTAACTAGCCTCT-AGAAGGCA-A
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCA-AAGGCATA
* * * ** * * *
219465 GAGTGACTACAAATGGACTTCTC-TAGTCAAGGGATGGA-TTTC-TTGTCATGTTT-CTCAAGAC
130 -AGTGACTATAAATAGACTTTTCTTA-TCAATAGAT-GACTTTCACT-TCATGTTTCCT-GAGGC
* * * *
219526 AAACATCCAATTATGATGTCTTTTAACTAAAAAGA-AAAAAAAATCAACTTAAAATCACTTAAAA
190 AAACATCCAATTATGATCTATTTTAAC-AAAAA-ATAAAAAAAATCAACTTAAAATCATTTATAA
* * * * ** * * * *
219590 GAGTAT-AAATCATTCAAAGCAAGTAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTT
253 GATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTT
* * * * * * *
219654 TTCTTGTCACTGGTTGGCTTTCGCTTCACATTTCCTAAGGTAAATATCCAACTT-TGATCTGTTT
318 TTCTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAA-TTATGATATGTTT
* * * * * * *
219718 TAAGAACAAATGAAAAAAAATTCCACTTAAAATAATTTATAACATTATAAAACAATTTAAAGA-G
381 TAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAA-ATG
* * * * * * * * * **
219782 AGTAATTAGTCTTTTGAAGGAATGAA-TGATTGTAAATAGACTTTTCTTGTCAATTGATAGTTTT
443 AGTAACTAGCCTTTCGAAGGCAT-AAGTGACTATAAATGGACTTATCTTGTCAATGGAT-GACTT
*
219846 TGA
506 TCA
** * *
219849 -TTCATGTTTCTCGA-GACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTC
1 CTTCATGTTTCTTAAGGA-AAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * *
219912 AACTTAAAATCATTTATAATATTATAAAACTATTGAAAGCATGTAACTAG-ACTTTGAAAGGTAT
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTA-TTTCAAAGGCAT
* * * * * * * * * *
219976 GAGTGATTATAAATGGAATTTTCTTAT-ACATGGAT-ACCTTTCACTTCACGTGTCTTAAGGTAA
129 AAGTGACTATAAATAGACTTTTCTTATCA-ATAGATGA-CTTTCACTTCATGTTTCCTGAGGCAA
* * * * * *
220039 ACATCCAATTATGATTTGTTTTATCAAAAAGTGAAAAAAAATTCAACTTGAAATAATTTATAAGA
192 ACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAAGA
* * * * * * * * * *
220104 TTATAAAACCATTGAAAGGGAGTAATTAGTCTTTCAAATGCGTGAGTGTCTATACATGGACTTTT
255 TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTT
* * * * ** * * * *
220169 ATTGTTAATGGATGGTTTTTTCTTCATGATTTCTCAGGCAAACATCCAATTATTATATGCTTTAA
320 CTAGTCAATGGATGGCTTTCACTTCA-CATTTCTAAGGCAAACATCCAATTATGATATGTTTTAA
* * * * * *
220234 CCACAAATAAAAAAAA-TCAACTTAAAATCATTTATAAGACTATAAATCATGT-AAAGTGAGTAA
384 CAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACAT-TCAAAATGAGTAA
* * ** * * * * * * **
220297 CAAGCCTTTCAAAGATATGAGTGACTCTATATGGACTTTTCTTATCAATGGATGGCTTTTG
448 CTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * ** *
220358 CTTTCCT-TTT-TTCAATGAAAACATCCAATTATGATCTGCTTTAACCAAAAATGAAAAAAAATT
1 C-TTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATT
* *
220421 CAAC-------CATTTA-AAG-------------TG--A-C---TAACCAGTATTT-AGAAAGCA
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCA-AAGGCA
* * * * ** * **
220458 TGAGTGACTATAAATGGACTTTTCTTATCAATCGATGGCTTTTGCTTCATATTTTTTGAGGCAAA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* ** * * * * *
220523 AATATAATTATGATGTGTTTTAACTAAAAATAAAAAAAAAACAACTTAAAATCATTTATAAGAGT
193 CATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGATT
* * * * * *
220588 ATAAAACCATTGAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTCTCT
257 ATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCT
* * * * *
220653 AGTAAATGGATGGCTTTCAC-T-ACATGCTTCTCGAGGCAAACATGCAATTACGATTTGTTTTAA
322 AGTCAATGGATGGCTTTCACTTCACAT--TTCT-AAGGCAAACATCCAATTATGATATGTTTTAA
* * * * *
220716 CCAATAATAAT-AAAAAAATTCAACTTAAAATCATCTATAAGAGTATAAATCATTCAAAACGAGT
384 -CAA-AA-AATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGT
* * * * * * * **
220780 AACTAGACTTTCAAACGCATGAGTGACTATAAATGGACTTCTCTGGTCAA-GGAATGGCTTTTG
446 AACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGG-ATGACTTTCA
* * * * *
220843 TTTCACGTTTCTTAAGGCAAAA-ATCCAATTATGATATCTTTTAACCAAAAAT-AAAAAAAATTC
1 CTTCATGTTTCTTAAGG-AAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * ** * *
220906 AACTTAAAATCATTTATAAGAGTAT-AAATCATTCAAAGCGAGTAACTAGCCTTTCGAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * * *
220970 AGTGACTATAAATGGACCTTTT-TT-GCTACTGGATGGCTTTCGCTTTATGTTTCCTGAGGCAAA
130 AGTGACTATAAATAGA-CTTTTCTTATC-AATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* * * *
221033 CATCCAATT-TGGATCTGTTTTAACTATAAATGAAAAAAAAATTCTACTTAAAATCATTTATAAG
193 CATCCAATTAT-GATCTATTTTAACAAAAAAT--AAAAAAAA-TCAACTTAAAATCATTTATAAG
* * * * * * *
221097 ATTATAAAA-CATTTTAAAGTGAGTAATTTA-TCTTTCGAAGGAATGAA-TGATTCTAAATGGAC
254 ATTATAAAACCA-TTTAAAGCGAGTAA-CTAGTATTTCGAAGG-CTTAAGTGACTATAAATGGAC
* * * ** * * * ** * *
221159 TTTTCTTGTTAATTGATAGTTTTTTA-TTCACTTTTCTTGAGAAAAACATCCAATTCTGATTTGT
316 TTTTCTAGTCAATGGAT-GGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGT
* * * * * * * * **
221223 TTTGACCAAAAATGAAAAACATTTCAATTTAAAGTCA--T---ATATTATAAAACCATTGAAAGC
379 TTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* * * * * * * *
221283 GAGTAACTAGGCTTTCAAAGGTC-TGAGTGATTATAAATAGACTTTTCTTATCCATGGAT-AGCT
442 GAGTAACTAGCCTTTCGAAGG-CATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CT
**
221346 TTTG
505 TTCA
** * * * * *
221350 CTTCATGTTT-TTGAAGTTAAACATCCATTTATGATCTATTTTATCAAAAATTTAAAAAAAATAC
1 CTTCATGTTTCTT-AAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * * * *
221414 GACGTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAATCTTTCAAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATA
* * * * * * * * *
221479 AGTGGCTATAAATGGACTTTTATTGTCAATGGATGGCTTCCGCTTTATGTTT--TGCAAGGCAAA
130 AGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTG--AGGCAAA
* * * * *
221542 CATTCAATTACGATCTATTTTAACCAAAAATAAAAAATATCAACTTAAAATCATTTATAAGACTA
193 CATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGATTA
* * * * ** ** * * *
221607 T-AAATCATTCAGAA-TGAGTAACAAGCCTTTTAAAGGCATGAGTGACTATATATGGACTTTTCT
258 TAAAACCATTTA-AAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCT
* * * ** * * * * * *
221670 TGTCAATAGATAGCTTTTGCTTCACTTTTCTTGAGGAAAATATCCAATTATGATCTGTTTTAACC
322 AGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTTAACA
* * * *
221735 AAATAT-AAAAAAA---AAC------TCA---AC--CATT-T--AA-A-T-----TGACTAACCA
386 AAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGTAACTA
** * * * * * * * **
221775 GTATTTAGAAGGCATGAGTGATTATAAATAGACTTTTCTTGACAATGGATGGCTTTTG
451 GCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * *
221833 CTTCATGTTTTTTAAGGCAAAA-ATCCAATTATGATATCTTTTAATC-AAAAAT-AAAAAGAAAT
1 CTTCATGTTTCTTAAGG-AAAACATCCAATTATGATCTATTTTAA-CAAAAAATGAAAAA-AAAT
* * * * * ** * *
221895 GCAGCTTAAAATCATTTATCAGATTATACAACCATTGTAAGTGAGTAACTAGTATTT-AGGAGGT
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCA-AAGGC
* * * * * * * * * *
221959 ATGAGTCACTATAAGTGGACTTCTC-TAGTCAAT-GAATGGCTTTCGCTTCATGCTTT-TTAATG
127 ATAAGTGACTATAAATAGACTTTTCTTA-TCAATAG-ATGACTTTCACTTCATG-TTTCCTGAGG
* * * * * * *
222021 CAAACATCCAATTATGATATGTTTTAACCAATAATAAAAATGATTCAACTTAAAATTATTTATAA
189 CAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAA-AAATCAACTTAAAATCATTTATAA
* * * * * * * *
222086 GAGTAT-AAATCATTTAAAACGAGTAACTA-CACTTTCGAAGACATGAGTGAATATAAATGGACT
253 GATTATAAAACCATTTAAAGCGAGTAACTAGTA-TTTCGAAGGCTTAAGTGACTATAAATGGACT
* * * * *
222149 TTTCTTGTCAATGGATGGCTTTCACTTTACATTTCTCAAGACAAACATCTAATTATGATCTGTTT
317 TTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTT
* * * **
222214 TAACAAAAAATGAAAAAAAGATTCAACTTAAAATCATTTAAAAGAGTATAAAACCATTTAAAGCG
381 TAACAAAAAAT-AAAAAAA-ATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATG
* * * * * * *
222279 AGTAACTTGTCTTTC-AAGGGCATGAGTGACTATAAATGGACTTTTATTGTGAATGGATGGCTTT
443 AGTAACTAGCCTTTCGAA-GGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTT
222343 CA
507 CA
* * * * * * * *
222345 CTTCACGTTTCTCAGGGTAAACATCCACTGATGA-CTTATTTTAGCTAAAAA-GAAAAAAAATTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATC-TATTTTAACAAAAAATGAAAAAAAATTC
* * * * ** * ** * * *
222408 AACCTAAAATCATCTACATA-ATTCTAAAATTATTAAAAGCGGGTAACAAGCCA-TTCCAAGGCA
65 AACTTAAAATCATTTATA-AGATTATAAAACCATTGAAAGCAAGTAACTAG-TATTTCAAAGGCA
* * ** ** * * * *
222471 TGAGTGACCATAAATAGACTTTTCTT-TCTAATCTAT-AGCTTTTGCTCCACGTTTTCTAAGGCA
128 TAAGTGACTATAAATAGACTTTTCTTATC-AATAGATGA-CTTTCACTTCATGTTTCCTGAGGCA
* * * * * * ** * *
222534 AACATCTAATTATGATCTGTATGAACTAAAAATAGAAAAAATCAAGGTAAAATCATTTACAAGAC
191 AACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGAT
* * * ** * * * * * *
222599 TAT-AAATCACTTAAAGCGAGTAATTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTATCC
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTC
* * * ** * ** * * * *
222663 TTGTCACTAGATGGCTTTCGTTTTATGTTTCCCAAGGCAATA-ATCAAATTATAATCTGTTTTAG
321 TAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAA-ACATCCAATTATGATATGTTTTA-
* * * * **
222727 TC-AAAAATGACAAAAAAGTTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAACAAG
383 ACAAAAAAT-A-AAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAG
** * * * ** *
222791 TAACTAGTATTTCGAAGGTAGT-AGTGGCTATAAATGGACTTTTCTTACCAATGGAT-AGTTTTC
445 TAACTAGCCTTTCGAAGGCA-TAAGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CTTTC
*
222854 G
508 A
** * * * *
222855 CTTCACATTTC-TAGAGGTAAA-ATCCAATTATGATATGTTGTAATC-AAAAAT-AAAAAAAA-T
1 CTTCATGTTTCTTA-AGGAAAACATCCAATTATGATCTATTTTAA-CAAAAAATGAAAAAAAATT
* * * ** *
222915 CAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAG-AGAGTAAGTAGTATTTTGAAGGTA
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCA-AGTAACTAGTATTTCAAAGGCA
* * * * * ** * *
222979 TAAGTGATTATAAATAGACTTTTTTTGTCAATAGATGGCTTT---TGC-TCCTT--GGA-GAAAA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* * * * * *
223037 CATACAATGATGATTTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATGAGAT
193 CATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAAGAT
* * * * * * * *
223102 TATAAAACCAATTAAAGTGATTGACTAGTATTTTGAAGGCATAAGT-AGCCATAAATGGGCTTTT
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGA-CTATAAATGGACTTTT
* * * * * * **
223166 CTTGTCAATGGATGGCTTTCACTTCACATTTCCTGAGGCAAAGATACAATTATAATCTGTAATAA
320 CTAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTTTAA
* * * * * *
223231 CAAAAAACAAAAAAAATTCATCCTAAAATCATGTATAAGATTATAAAACCATTTAGAGAA--AGT
384 CAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCA-A-AATGAGT
* * * * * * * *
223294 -ACTCAGGCTTTTGAAGGCATGAA-TGAGTATAGATAGACTTTTCTTCTCAATTGAT-AGCTTTC
446 AACT-AGCCTTTCGAAGGCAT-AAGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CTTTC
*
223356 G
508 A
* ** * * * * *
223357 CATCA-GATTTCCAAAGGCAAACATCCAATTATGATATGTTTTAACCAAAAACA-AAAAAAAAAC
1 CTTCATG-TTTCTTAAGGAAAACATCCAATTATGATCTATTTTAA-CAAAAA-ATGAAAAAAAAT
* * * ** * * *
223420 TCAACTTAAAATCATTTACAAGATTATAAAGCCATTTAAAGCGTGTAAGTAGTATTTCGAAGGTA
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCA
* * * * * * * * *
223485 TGAGTGACTATAAATAGACCTTTCTTGTAAATGGATGGCTCTT-GCTTCACGTTT-CTCAAGGCA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACT-TTCACTTCATGTTTCCT-GAGGCA
* * **
223548 AGCATCCAATTATGATCTGTTTTAGTAAAAAATAAAAAAAAATTCAACTTAAAATCATTTATAAG
191 AACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAAG
* * * * ** * * *
223613 ATGATAAAACCATTTAACGAGAGTAACTTGCCTTTC-AAGGGCATGAGTGACTATAAATGAACTT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAA-GGCTTAAGTGACTATAAATGGACTT
* * * * * * *
223677 TTCTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAAAGCAAACATCCAATGATGATTTGTTTT
318 TTCTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTT
** * * * * *
223742 AATGAAAAATAAAAAAAA-T-AACCTTAAAATCATCTACATGGTTCTAAAACCTT-----T---T
382 AACAAAAAATAAAAAAAATTCAA-CTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGT
* * ** ** * **
223797 AA--AG-----CG-A-G--T-A---AC----AA--GCCATCCCAAGTCAATGGATGGCTTTTG
446 AACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
** * * * * * * * *
223839 CTTCATGTTT-TCTAAATAAAA-ATCAAATTATAATATGTTTTAGCCAAACATGAACAAAAATTC
1 CTTCATGTTTCT-TAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * **
223902 AAC-TAATATCATTTATAAGATTATAAAACCACTAAAAGCGAGTAACTAGTATTTTGAAGGCATG
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT-
* * * * * * * *
223966 AA-TGACTATAAAT-GTACTTCTC-TAGTCAATGGATGGCTGTCGCTTCATGCTT-CTCAAGACA
129 AAGTGACTATAAATAG-ACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCT-GAGGCA
* * * *
224027 AACATCCAATTATGATATGTTTTAACAAGAAATAAAAAAAATCAACTTAAAATCATTTATAAAAT
191 AACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGAT
* * * * * * * *
224092 CAT-AAATCATTCAAAGCAAGTAACTAG-ACTTTCGAAGGCATGAGTGACTATAAGTAGACTTTT
256 TATAAAACCATTTAAAGCGAGTAACTAGTA-TTTCGAAGGCTTAAGTGACTATAAATGGACTTTT
* * * * * * *
224155 CTTGTCCATGGATAGCTTTCACTTCA-AGTTTCCCAAGGTAAACATCCACTTATGATCTGTTTT-
320 CTAGTCAATGGATGGCTTTCACTTCACA-TTT-CTAAGGCAAACATCCAATTATGATATGTTTTA
** * * * *
224218 --AATGAA-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-CAACTATTTAAAGTGAGTA
383 ACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAATGAGTA
* ** * * * * * * *
224279 ACTGGTATTTAGAAGGCATGAGTGGCTATAAATGGACATT-TCTTGTCAACGGATGGCTTACG
447 ACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGAC-TTATCTTGTCAATGGATGACTTTCA
* ** * * * * * * * *
224341 TTTCACATTTCCTGAGGGAAATATCCAATTATAATCTGTTTTAACAAACAATGGGAAAAAAATTC
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAAT-GAAAAAAAATTC
* * * *
224406 AAAAACTTAAAAATCATTTACAAGATTAATAAAAAGCCATT-AAATCGAGTAATTAGTATTTCAA
65 ---AACTT-AAAATCATTTATAAGATT-AT-AAAA-CCATTGAAAGCAAGTAACTAGTATTTCAA
* * * * * * * *
224470 AGGCATGAGTGACTATAAATTGACTTTT-GTAGTCAATGGATGGCTTTTACTTCATGTTTCTTAA
123 AGGCATAAGTGACTATAAATAGACTTTTCTTA-TCAATAGATGACTTTCACTTCATGTTTCCTGA
* * * * * * ***
224534 GGTAAACACCCAATTATGATATGTTTTAATAAAAAAT----AAAATC-ACTTATAA-CA---CCC
187 GGCAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATA
* * * ** * * * ** *
224590 A-ATTAT-----GA--T-ATG-G-CT---TA-CCTTTCAAAAGCATGTGTGACTATAAATGGGCT
252 AGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACT
* * * * ** ** * *
224640 CTTATCGTCAATGGATGGCTTTCGCTTCATGTTTCTCAAGATAAACATCTAATTATGATCTGTTT
317 TTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTT
** * * * * **
224705 TAATGAAAAATAAAAAAATATT-AAGTTAAAATCATTTATAAGATTTTAAAACCATTTAAAGCGA
381 TAACAAAAAATAAAAAAA-ATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGA
* ** * * * * * * * * **
224769 CTAACTAGTATTTGGAAGGTATAAGTGACTATAAATAGATTTTTCTTGCCAATAGATGATTTTTG
444 GTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * ** ** * *
224834 CTTTATGTTTCCTAAGGTGAACATTTAATTATTATCTATTTTAACAAAAAATTTTAAAAAAAATT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAA--TGAAAAAAAATT
* * ** * **
224899 -AACTTAAAATCATTTATAAGATTACAAAACCATTTAAAGTGAGTAATTAGGCTTTCAAAGGCAT
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * * ** ** * * * *
224963 GAA-TGACTATAAATGAAAC-TTTCTTGTCAATTGATGGCTTTTGCTTCACATTTTCTAATGTAA
129 -AAGTGACTATAAAT-AGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAA
* * * * * * * * *
225026 ACATCAAATTACGATATGTGTTAACCAAAAAT-AAAAAAATCAATTTAAAGTCATTTTTAA-AGT
192 ACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGA-T
* * ** ** * *
225089 TACAAAATCATTTAAAATGAGTAACTAGCCTTTCAAAGG-TATGAGTGACTATAAATGGACTTTT
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGACTTTT
* ** * *
225153 GT--TACAAATGGATGGCTTTGGCTTCACATTTCTCAAGGCAAACATCTAATTATGATTTGTTTT
320 CTAGT-C-AATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGTTTT
* * * * * * * *
225216 AACGAAAAATGAATACAAAAAATTTTAACTTAAAATCATTTATAATATTGTGAAACCATTTAAAG
382 AAC--AAAA--AATA-AAAAAAATTCAACTTAAAATCATTTACAAGATTAT-AAAACATTCAAAA
* * * * *
225281 TGAGTAACTAGTCTTTCAAAGGCATGAA-TGTA-TATAAATGGACTTTTCTTATCAATGAAT-AG
441 TGAGTAACTAGCCTTTCGAAGGCAT-AAGTG-ACTATAAATGGACTTATCTTGTCAATGGATGA-
*
225343 CTTTCG
503 CTTTCA
* * * * * * * *
225349 CTT--TGCATTCCTCAATGCAAA-ATTCAATTATGATATGTTTTAATAAAAAATG-AAAAAAATT
1 CTTCATG--TTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATT
* * * * * * * ** **
225410 CAACTTAAAATCATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTCA-CATTTTGAAGATA
64 CAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACT-AGTATTTCAAAGGCA
* ** * * * * ** * *
225474 TGAGTGGTTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTAATGTTTCTTGAGGCAAA
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAA
* * * * * *
225539 CATCCGATTATGATTTGTTTTAATAAAAAATAAAAAAAATCAATTTAAAATCATTTACAAGATTA
193 CATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGATTA
* * * * * *
225604 TAAAACCATTTAAATCAAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAGTGGACTTCTCTA
258 TAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCTA
* * * *
225669 GTTAA-GAGATTGCTTTCACTTTATATTTCTTAAGGCAAACATCCAATTATGATATGTTTTAACA
323 GTCAATG-GATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTTAACA
* * * * * * * * * *
225733 AACAATTTAACAAAAATTTAACTTACAATCATTTATAAGACTATAAATCATTCAAAGTAAGTCAC
386 AA-AA-ATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGTAAC
* * * *
225798 TAGCCTTTCAAAGGCAT-GGTGGCTATAAATGGACTT-TACTTGTCAATGGATGA-TTTTA
449 TAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTAT-CTTGTCAATGGATGACTTTCA
* * * *
225856 GCTTCATGTTTCATAAGGCAAATATCCAACTATGATCTATTTTAACAAAAAATGAAAAAAAA-TC
1 -CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* ** * **
225920 AAGTTAAAATC-TTTATAAGATTATAAAACCATTTG-AAGTGAGTAATTAGGCTTTCAAAGGCAT
65 AACTTAAAATCATTTATAAGATTATAAAACCA-TTGAAAGCAAGTAACTAGTATTTCAAAGGCAT
* * * * * * * * *
225983 GAA-TGACTATAAATGGACTTTTCTTTTCAATTGATGGCGTTCGCTTCATGTTT-TTTAGTGTAA
129 -AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAG-GCAA
* * ** * * * *
226046 ACATCAAATTATGATTTATGCGTAACCAAAAATGAGAAAAAAGTTAATTTAAAATCATTTATAAG
192 ACATCCAATTATGATCTAT-TTTAACAAAAAAT-A-AAAAAAATCAACTTAAAATCATTTATAAG
* * * ** * * * * *
226111 ATTATAAAATCACTTAAAACGAGTAACTAGGCTTTCAAAGGATGAA-TGACTATAAATGAACTTC
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTT
* * * * *
226175 TCTAGTCAATGGATAGCTTTCACTTCACGTTTCTTGAGGCAAACATCTAATTATAATATGTTTTA
319 TCTAGTCAATGGATGGCTTTCACTTCACATTTC-TAAGGCAAACATCCAATTATGATATGTTTTA
** * * * * *
226240 ATGAAAAATAAGAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTA
383 ACAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAATGAGTA
* * * * * * * * *
226305 ATTTGTC-TTCCAAGGGCATGAGTAACTATAAATGAACTTTTCTTGTCAATGGGT-AGCTTTCA
447 ACTAGCCTTTCGAA-GGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGA-CTTTCA
* * * * * ** * *
226367 GTTTACGTTT-TCCAAGAAAAACATCCAACGATGATTTATTTTAATAAAAAAT--AAAAAAA-TC
1 CTTCATGTTTCT-TAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * * * * ** * * * * * *
226428 AATTTAGAATCATCTACAAGATTCTAAATTCATTTAAAGCGAGTAAC-AGGCCA-ATCCAAGGTA
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTA-G-TATTTCAAAGGCA
* * * * * * * * * * *
226491 TACA-TGACTTTAAATGGACTTTTTTTGTCAATGGATGGCTTTTATTTCATATTT-TTCAAGGCA
128 TA-AGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCT-GAGGCA
* * * * * *
226554 AATATTCAATTATGATATGTTTTAACCAAAAAAGAAAAGAAATTCAACTTAAAATCATTTATAAG
191 AACATCCAATTATGATCTATTTTAA-CAAAAAATAAAA-AAAATCAACTTAAAATCATTTATAAG
* * * *
226619 ATTATAAAATCATTTAAAACGAGTAACTAGTATTTCGAAGGCATGAA-TGGCTATAAATGGACTT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGC-TTAAGTGACTATAAATGGACTT
* * ** * * *
226683 TTCTTA-TCAATGGATGGCTTTCGCTTTATGTTTCCTAAGGAAAACATCCATTTATGATCTG-TT
318 TTC-TAGTCAATGGATGGCTTTCACTTCACATTT-CTAAGGCAAACATCCAATTATGATATGTTT
* * *
226746 TAACAAAAAA-AGAAAAAAATTCAACTTAAAATTATTTACAAGATTATAAAACTATTTAAATTGA
381 TAACAAAAAATA-AAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAATGA
** * * * * * **
226810 GTAACTAGTATTTCGAAGGAATAAGTGACTATAAATGGACTTCTCTAGTCAAAGGATGGCTTTTG
444 GTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * * * * *
226875 CTTCATGTTTCTTGAGGCAAATATCCAATTATGATATGTTTTAAC-TAAAATTAAAAAAAATTTA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * ** * *
226939 ACCTAAAATCATTTATAAGACTAT-AAATCATTTAGAATG--TGTAACTAGCCTTTCGAAGGTAG
66 ACTTAAAATCATTTATAAGATTATAAAACCA-TT-GAAAGCAAGTAACTAGTATTTCAAAGGCA-
* * * * ** * * * *
227001 T-AGTCACAATAAATGGACTTTTCTTGTCAATTCACGGA-TTTCGCTTCACATTTTTTACT-A--
128 TAAGTGACTATAAATAGACTTTTCTTATCAATAGA-TGACTTTCACTT--CA-TGTTTCCTGAGG
* * * * *
227061 TAAACATCAAATTATGATCTGTGTGTAAC-AAAAATAAAAACAAAAGTCAA-TCTAAAATAATTT
189 CAAACATCCAATTATGATCTAT-TTTAACAAAAAAT-AAAA-AAAA-TCAACT-TAAAATCATTT
* * * * * ** ** *
227124 TTAA-AGTAAAAAAATCACTTAAATTGAGTAACTAGGCTTTCGAAGGCGTAAGTGACTATAAATG
249 ATAAGA-TTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATG
* * ** * *
227188 GAC--TTC-A--C----G-T-G--------T--C---TC-AAGGTAGATGTCTAATTATGATTTG
313 GACTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCTAAGGCAAACATCCAATTATGATATG
* * * ** * * * * *
227228 TTTGAATGAAAGACGAAAAAAAATTCAACTTTAGATCATTTATAAGATTATAAAACCATTTAAAG
378 TTTTAA-CAAAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAA
* * * * * *
227293 TAAGTAACTTA-TCTTTC-AAGGGCATGAA-TGACTATAAA-GAGACTTTTCTTATTAATAGATG
441 TGAGTAAC-TAGCCTTTCGAA-GGCAT-AAGTGACTATAAATG-GACTTATCTTGTCAATGGATG
** *
227354 GGTTTTA
502 ACTTTCA
* * * * *
227361 GTTCATGTTTCTTGAGGCAAAA-ATCCAATGATGATTTGTTTTAA-ACAAAAATGAAAAAAAAAT
1 CTTCATGTTTCTTAAGG-AAAACATCCAATTATGATCTATTTTAACA-AAAAATG-AAAAAAAAT
* * * * * * * * *
227424 TCAACTTAAAATCGTCTACAAGATTCTGAAACCATTTAAAGCAACTAAC-AATCCA-TTCCAAGG
63 TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGT--ATTTCAAAGG
* * * * * * ** * *
227487 CACAATTGACTATAAATAGACTTTTCTTGTTAATTGATGGCTTTCGTTTCACGTTTCTTGAGGC-
126 CATAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCA
* * * * *
227551 AACATCTAATTATGATATGTTTTAACAGAAAATTAAAAAAAATTCAATTTAAAATCATTTATAAG
191 AACATCCAATTATGATCTATTTTAACA-AAAAATAAAAAAAA-TCAACTTAAAATCATTTATAAG
* * * * * *
227616 ATTATAAAACCATTTAAAGTGAGAAAGTAATATTTTGAAGG--TACGAGTGACTATAAATAGATT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTA--AGTGACTATAAATGGA--
* * * * * * * *
227679 TTTTTTTA-TCAATGGATGGCTTTCACTTCACGTTTCTCGAGACAAACATCCAATGATGATTTGC
315 CTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGT
* * ** *
227743 TTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATGAGATTATAAAATCATTCAAAGT
379 TTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* ** * * * * *
227808 GACTAACTAGTATTTCGAAGGCATGAGTGACTATAAATAGATTTTTTCTTGTCAAAGGATGA-TT
442 GAGTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGA-CTTATCTTGTCAATGGATGACTT
**
227872 ATTG
506 -TCA
* ** * * *
227876 CTTCATGTTTCTCAAGTCAAGCATCCAATTATTATCTATTTT-A-AAAATATG-AAAAAAATT-A
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * * * * **
227937 ACCTGAAAATCATTTATAAAATTACAAAACCATTTAAAACGAGTAATTAGGCTTTCAAAGGCATG
66 A-CTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCAT-
* * * * * * * * *
228002 AA-TGACTATAAATAGACTTTTCCTGTCAATTGATGGCTTTCGCTTCACGTTTTCC-CATGTAAA
129 AAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATG-TTTCCTGAGGCAAA
* * * * *
228065 CATCAAATTATG----A-TTTAA-AAACAATGAAAAAAGATCAATTTAAAATCATTTTTAA-AGT
193 CATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGA-T
* * * * * * * *
228123 AATAAAATCAATTAAAGTGAATACACAAG-CTTTCAAAGGCATT-AGTGACTATAAATGGACTTT
256 TATAAAACCATTTAAAGCGAGTA-ACTAGTATTTCGAAGGC-TTAAGTGACTATAAATGGACTTT
* * * * * * * * * * * *
228186 TTTTGTAAATGTATAGCTTTTGA-TAT-ACGTTTCTTGATGCAAACATCTAATTATAATCTGTTT
319 TCTAGTCAATGGATGGC-TTTCACT-TCACATTTC-TAAGGCAAACATCCAATTATGATATGTTT
* ** * * * * *
228249 TAATTAAGAATTTAAAAAAAGGTTCAACGTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
381 TAA-CAA-AAAATAAAAAAA-ATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* * * * * * * * * *
228314 GAGTAATTAG-TTTGTTGAAGGCACAAATGATTGTAAATGGACTGT-TCTTTTCAATTGATGGCT
442 GAGTAACTAGCCTT-TCGAAGGCATAAGTGACTATAAATGGACT-TATCTTGTCAATGGATGAC-
*
228377 TTTGA
504 TTTCA
** * * * *
228382 -TTCACCTTTCTCAA-GACAAACATCCAATTATGATCTATTTTGACTAAAAGTGAAAAAAAAATT
1 CTTCATGTTTCTTAAGGA-AAACATCCAATTATGATCTATTTTAACAAAAAATG-AAAAAAAATT
** * *
228445 CTAA-TTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAGTCTTTCAAAGGTA
64 C-AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCA
* * * * * ** * *
228509 TGAGTGACTATAAA-CGAACTTTTCTTGTCCATGGATGACTTTTGCTTCACGTTTCTTGAGGCAA
128 TAAGTGACTATAAATAG-ACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAA
* * * * ** * * *
228573 ACATCGAACTGTAATCTATTTTATGAAAAAATGAAAAGAAATCAACTTAAGATAATTTATAAGAT
192 ACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAATCAACTTAAAATCATTTATAAGAT
* * ** * * * * * *
228638 TATAAAACTATTGAAAATGATTAACTAG-ACCTTCAAAGTCATGAA-T-AGCTACAAATGGACTT
256 TATAAAACCATTTAAAGCGAGTAACTAGTA-TTTCGAAGGC-TTAAGTGA-CTATAAATGGACTT
* * ** * *
228700 TTCTTGTCAATGGATGGCTTT-GCTTCACATTGTCTTTGGCAAACATCCAATTATGATCTATTTT
318 TTCTAGTCAATGGATGGCTTTCACTTCACATT-TCTAAGGCAAACATCCAATTATGATATGTTTT
* * **
228764 AACTAAAAATGAAAAAACAA-TCAACTTAAAATCATTTACATGATTATAAAACCACTT-AAAGCG
382 AACAAAAAAT-AAAAAA-AATTCAACTTAAAATCATTTACAAGATTATAAAA-CA-TTCAAAATG
* * * * *
228827 AGTAACTAGCATTTTGAAGGCATGAGTGGCTGTATAAATGGACTT-TCCTTGTCAATGGATGGCT
443 AGTAACTAGCCTTTCGAAGGCATAAGTGAC--TATAAATGGACTTAT-CTTGTCAATGGATGACT
*
228891 CTCA
505 TTCA
** * * *
228895 CTTCACATTTCCTAAGGTAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCA
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
* * * * ** *
228960 ACTTAAAATCATTTACAAGATTATAAAACCATTTAAATCAAGTAATTAGTATTTTGAAGGCATGA
66 ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATAA
* * * * ** * **
229025 GTTACTACAAATGGACTTCT-TTAGTCAAT-GAATGGTTTTCATTTCATGTTT-CTCGAGATAAA
131 GTGACTATAAATAGACTTTTCTTA-TCAATAG-ATGACTTTCACTTCATGTTTCCT-GAGGCAAA
* ** * * *
229087 TATTTAATTATGATCT-GTTTAACTAAAAATAAAAAGAAATTTAACTTAAAATCATTTATAAGAT
193 CATCCAATTATGATCTATTTTAACAAAAAATAAAAA-AAA-TCAACTTAAAATCATTTATAAGAT
* * * * * * * * * *
229151 CAT-AAATCATTCAAAGCGAGTACCTCGCATCTCAAAGGCATGAGTGACTATAAATGGACTTTTG
256 TATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTT-
* * * * * * **
229215 TTA-TCCAATGGATGGCCTTCGCTACATATTTTCCAAAACAAACATCCAATTATGATATGTTTTA
320 CTAGT-CAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATATGTTTTA
* * * * ***
229279 GCTAAAAATAAAAGAGAAATTCAA-TCTAAAATCATTTACAAGATTATAAAATCGTTGAAAGCAA
383 ACAAAAAATAAAA-A-AAATTCAACT-TAAAATCATTTACAAGATTATAAAA-CATTCAAAATGA
* * * * * * * *
229343 GTAACTAGGCTTTCAAAGGCGTAAGTGACTATAATTAGATTTTTCTTGTCAATGGATGGCTTTCA
444 GTAACTAGCCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
* * * * *
229408 CTTCATGTTTCCTAAGGCAAACATCCAATTATGATCTGTTTTGACCAAAAATGAAAAAAATAATT
1 CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATG-AAAAAA-AATT
* * *
229473 TAA-TTGAAAATCATTTATTAGATTATAAAACCATAT-AAACGCAAGTAACTAG-ACTTTCGAAG
64 CAACTT-AAAATCATTTATAAGATTATAAAACCAT-TGAAA-GCAAGTAACTAGTA-TTTCAAAG
* * * * * * * *
229535 GTATGAGTGACTATAAATAGACTTTCCTTATCAATGGAAGGCTTTCGCTTCATGTTTCACGGAGG
125 GCATAAGTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTC-CTGAGG
* * * ** *
229600 AAAACATCCAATTATGATATGTTTTAATGAAAAATGAAAAAAAATTCAACTTAAAATAATTTATA
189 CAAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATA
* * * * * ** * *
229665 AGATTATAAAACC-TTTGAAAGTGAGCAATTAGTCTTTCAAAGG-TATGCGTGGCTATAAGTGGA
252 AGATTATAAAACCATTT-AAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGA
* * ** * * * * * **
229728 CTATTCTTGTCAATGGATGGCTTTTGCTTAACATTTGTCGAGGCAAACATTCACTTATGATCCGT
315 CTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCT-AAGGCAAACATCCAATTATGATATGT
* * * * *
229793 TTTAATAAAAAATGAAGAAAAATTCAACTTAAAATCATTTAGAAGATTATAAAATCATTTAAAGT
379 TTTAACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAA-CATTCAAAAT
* * ** * * * * *
229858 GAGTAACTAGTAC-TTCGAAGGCAAAAACGGCTATAAATGGACTTTTCATGTCAACGGATGGCTT
442 GAGTAACTAG-CCTTTCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTT
**
229922 TTG
506 TCA
* * * * * *
229925 CTTCTTGTTTCGTAAGGTACAAGGTAAACATCCAAATATAATAT-TTTTAACAAACAAT--AAAA
1 CTTCATGTTTC-T----T--AAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAA
* * * * * * * *
229987 AAATTTAACTTAAAATCATTTACACGATTACAAAACCATTTAAATCGAGTAACTAGTATTTCGAA
59 AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAA
* * * * * * * ** *
230052 GGTATGAGTGACTATGAATGGACTTAT-TGAGTCAATGGATTG-CTTTTGCTTCATGTTT-CTCA
124 GGCATAAGTGACTATAAATAGACTTTTCTTA-TCAATAGA-TGACTTTCACTTCATGTTTCCT-G
* * *
230114 AGGAAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAATCAACTTAAAATCATTTAT
186 AGGCAAACATCCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTAT
* * * * * ** *
230179 AGGATTGT-AAATCATTCAAAGCAAGTAACTAGCCTTTCAAAGG-TATAAGTGACTATAAATGGA
251 AAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCT-TAAGTGACTATAAATGGA
* * * * ** * * *** * * *
230242 GTTTTCTTGTCAACGCATGGCTTTCACTTCATGTTTTTGAGATGAACATCCAATTATAATTTTTT
315 CTTTTCTAGTCAATGGATGGCTTTCACTTCACATTTCTAAGGCAAACATCCAATTATGATATGTT
* * * * * * * * *
230307 TTAGCTAAAAATTTAAAAAAAGGTTCAACATATAATAATTTATAAGATTATAAAACTATTTAAAG
380 TTAAC-AAAAA-ATAAAAAAA-ATTCAACTTAAAATCATTTACAAGATTATAAAAC-ATTCAAAA
* * * * * * * * * * * *
230372 TGAGTAATTAG-TTTGTTGAAAGCTTGAA-TAATTGTAAATGGTCTTTTCTTTTCGAAT-GATGG
441 TGAGTAACTAGCCTT-TCGAAGGCAT-AAGTGACTATAAATGGACTTATCTTGTC-AATGGATGA
*
230434 CTTTTGA
503 C-TTTCA
** * * *
230441 -TTCACCTTTCCTGAA-GCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATT-
1 CTTCATGTTT-CTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTC
* * *
230503 AATTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTTGAAA-GCTT
65 AACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTA-TTTCAAAGGCAT
* * * * * ** ** *
230567 GAGTGACTATAAAT-GTACTTTTCTTGTCCATGGAT-AGCTTTCGCTTCACATTTCCCAAGGTAA
129 AAGTGACTATAAATAG-ACTTTTCTTATCAATAGATGA-CTTTCACTTCATGTTTCCTGAGGCAA
** * * * *
230630 ACATTGAATTATGATCTGTTTT-ATAAAATATGAAAAAAAAATTCAACTTAAAATAATTTATAAG
192 ACATCCAATTATGATCTATTTTAACAAAAAAT--AAAAAAAA-TCAACTTAAAATCATTTATAAG
** * * * ** * * * *
230694 ATTACGAAACTATTGAAAGTGAGTAACTAGTCCTTCAAAGGCATGAGT-AGCTAAAAATGGACTT
254 ATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGA-CTATAAATGGACTT
* ** ** ** * * *
230758 TTCTTGTCAAAAGATTACTTTTGCTTCACAGTTCCCAAGGAAAACATCCAATTATGATATGTTTT
318 TTCTAGTCAATGGATGGCTTTCACTTCACA-TTTCTAAGGCAAACATCCAATTATGATATGTTTT
* ** *
230823 AATAGCAAATGAAAAAAAATTCAAGTTAAAATCATTTA
382 AACAAAAAAT-AAAAAAAATTCAACTTAAAATCATTTA
230861 AAGCTAGTAA
Statistics
Matches: 24020, Mismatches: 5806, Indels: 3586
0.72 0.17 0.11
Matches are distributed among these distances:
472 11 0.00
473 24 0.00
474 2 0.00
476 95 0.00
477 28 0.00
478 12 0.00
479 127 0.01
480 20 0.00
481 38 0.00
482 271 0.01
483 324 0.01
484 233 0.01
485 169 0.01
486 206 0.01
487 199 0.01
488 146 0.01
489 90 0.00
490 19 0.00
491 21 0.00
492 47 0.00
493 114 0.00
494 97 0.00
495 9 0.00
496 17 0.00
497 9 0.00
498 3 0.00
499 7 0.00
500 16 0.00
501 63 0.00
502 356 0.01
503 281 0.01
504 571 0.02
505 434 0.02
506 404 0.02
507 340 0.01
508 1327 0.06
509 2106 0.09
510 2729 0.11
511 2328 0.10
512 2437 0.10
513 2490 0.10
514 1673 0.07
515 1077 0.04
516 562 0.02
517 450 0.02
518 254 0.01
519 245 0.01
520 277 0.01
521 90 0.00
522 69 0.00
523 116 0.00
524 90 0.00
525 6 0.00
526 29 0.00
527 3 0.00
528 2 0.00
531 1 0.00
532 1 0.00
533 3 0.00
535 6 0.00
536 5 0.00
537 8 0.00
538 9 0.00
539 5 0.00
540 9 0.00
541 9 0.00
542 22 0.00
543 26 0.00
544 33 0.00
545 22 0.00
546 16 0.00
547 32 0.00
548 9 0.00
549 4 0.00
550 5 0.00
551 8 0.00
552 12 0.00
553 19 0.00
554 19 0.00
555 12 0.00
556 11 0.00
557 4 0.00
560 1 0.00
561 3 0.00
562 5 0.00
563 2 0.00
565 10 0.00
566 22 0.00
567 20 0.00
568 24 0.00
569 41 0.00
570 12 0.00
571 5 0.00
572 9 0.00
573 30 0.00
574 47 0.00
575 29 0.00
576 16 0.00
577 32 0.00
578 18 0.00
579 25 0.00
580 20 0.00
581 24 0.00
582 12 0.00
583 18 0.00
584 25 0.00
585 16 0.00
586 13 0.00
587 15 0.00
588 10 0.00
589 9 0.00
590 5 0.00
591 5 0.00
592 5 0.00
593 5 0.00
594 3 0.00
595 1 0.00
597 6 0.00
599 4 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (508 bp):
CTTCATGTTTCTTAAGGAAAACATCCAATTATGATCTATTTTAACAAAAAATGAAAAAAAATTCA
ACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTCAAAGGCATAA
GTGACTATAAATAGACTTTTCTTATCAATAGATGACTTTCACTTCATGTTTCCTGAGGCAAACAT
CCAATTATGATCTATTTTAACAAAAAATAAAAAAAATCAACTTAAAATCATTTATAAGATTATAA
AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCTTAAGTGACTATAAATGGACTTTTCTAGTC
AATGGATGGCTTTCACTTCACATTTCTAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAA
TAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACATTCAAAATGAGTAACTAGCCTT
TCGAAGGCATAAGTGACTATAAATGGACTTATCTTGTCAATGGATGACTTTCA
Found at i:209413 original size:340 final size:341
Alignment explanation
Indices: 208702--209462 Score: 849
Period size: 340 Copynumber: 2.2 Consensus size: 341
208692 GTTTCTCGAG
* * *** * *
208702 GCAAACATCCAATTATGATATGTTTTAATGCAAAATGAAAAAAATTCAACTTAAAACCATTTATA
1 GCAAACAACCAATTATGATCTGTTTTAACAAAAAATTAAAAAAATTCAACTTAAAATCATTTATA
* * * *
208767 AGATTATAAAACCATTTAAAGTAAGTAACTTATCTTTCAAGGGTATTAGTGACTATAAATGAAAT
66 AGATTATAAAACCATTGAAAGCAAGTAACTGATCTTTCAAGGGTATGAGTGACTATAAATGAAAT
* * * *
208832 TTTCTTGTCAATAAATGGCTTTCGATTGACATTTACCAAGGAAAACATCCAACGATGATTTGTTT
131 TCTCTAGTCAATAAATGGCTTTCGATTCACATTTACCAAGGAAAACATCCAACGATGATATGTTT
* *
208897 TAATGGAAAATGAAAAAAAAAATTTAACTTAGAATCATTTACAAGATTTTAAAACTATTTAAAGC
196 TAATGGAAAAT--AAAAAAAAATTCAACTTAAAATCATTTACAAGATTTTAAAACTATTTAAAGC
* * *
208962 AAGTGATAAGCCATTCCAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAACCGATGACTTT
259 AACTAATAAGCCATTACAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAACCGATGACTTT
*
209027 TGTTTCACGTTTTTCATT
324 TGTTTCACGTTTTTCATA
* * *
209045 GCAAACATCTAATTATGATCTATTTTAACAAAAAATTAAAAAAATTCAACTTAAAATCATTTATA
1 GCAAACAACCAATTATGATCTGTTTTAACAAAAAATTAAAAAAATTCAACTTAAAATCATTTATA
* * * * ***
209110 AGATTATAAAGCTATTGAAAGCGAGTAACTGA-CATTTCAATGGTATGAGTGACTATAAATGCGC
66 AGATTATAAAACCATTGAAAGCAAGTAACTGATC-TTTCAAGGGTATGAGTGACTATAAATGAAA
* * * * * ***
209174 TTCTCTAGTCAATGAATGGCTTTCGCTTCACGTTT-CTCCA-GACAAACATTCAATTTTGATATG
130 TTCTCTAGTCAATAAATGGCTTTCGATTCACATTTAC-CAAGGA-AAACATCCAACGATGATATG
* * * * *
209237 TTTTAATTGAGAAT-TAAAACAATTCAACTTAAAATCATTTATAAGATTTTAAAACTATTTAAAG
193 TTTTAATGGAAAATAAAAAAAAATTCAACTTAAAATCATTTACAAGATTTTAAAACTATTTAAAG
* * * * *
209301 CGACTAACT-AG-TATTTAGAAGGCATGAGTGACTATAAATAGG-CTTTTCTTGTCAA-TGAATG
258 CAACTAA-TAAGCCA-TTACAAGGCATAAGTGACTATAAAT-GGACTTTTCTTGTCAACCG-ATG
* *
209362 ATTTTTGTTTCACGTTTTCTGA-A
319 ACTTTTGTTTCACGTTTT-TCATA
* * * *
209385 GCACATAACCAATTACGATCTGTTTTAACCAAAAA-TAAAAACAATTCAACTTAAAATCATTTAT
1 GCAAACAACCAATTATGATCTGTTTTAACAAAAAATTAAAAA-AATTCAACTTAAAATCATTTAT
*
209449 AAGATTTTAAAACC
65 AAGATTATAAAACC
209463 GTTTAAAGTG
Statistics
Matches: 350, Mismatches: 59, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
339 8 0.02
340 167 0.48
341 5 0.01
342 4 0.01
343 166 0.47
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (341 bp):
GCAAACAACCAATTATGATCTGTTTTAACAAAAAATTAAAAAAATTCAACTTAAAATCATTTATA
AGATTATAAAACCATTGAAAGCAAGTAACTGATCTTTCAAGGGTATGAGTGACTATAAATGAAAT
TCTCTAGTCAATAAATGGCTTTCGATTCACATTTACCAAGGAAAACATCCAACGATGATATGTTT
TAATGGAAAATAAAAAAAAATTCAACTTAAAATCATTTACAAGATTTTAAAACTATTTAAAGCAA
CTAATAAGCCATTACAAGGCATAAGTGACTATAAATGGACTTTTCTTGTCAACCGATGACTTTTG
TTTCACGTTTTTCATA
Found at i:220818 original size:171 final size:170
Alignment explanation
Indices: 220455--221755 Score: 1149
Period size: 171 Copynumber: 7.7 Consensus size: 170
220445 TATTTAGAAA
* * *
220455 GCATGAGTGACTATAAATGGACTTTTCTTA-TCAATCGATGGCTTTTGCTTCATATTTTTTGAGG
1 GCATGAGTGACTATAAATGGACTTTTC-TAGTCAATGGATGGCTTTTGCTTCATGTTTCTTGAGG
* ** * * * *
220519 CAAAAATATAATTATGATGTGTTTTAACTAAAAATAAAAAAAAA-ACAACTTAAAATCATTTATA
65 CAAACATCCAATTACGATCTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATA
* *
220583 AGAGTATAAAACCATTGAAAGTGAGTAACTAGTA-TTTCAAAG
130 AGAGTAT-AAACCATTCAAAGCGAGTAACTAG-ACTTTCAAAG
* * ** * * *
220625 GCATGAGTGACTATAAATGGACTTCTCTAGTAAATGGATGGCTTTCACTACATGCTTCTCGAGGC
1 GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGC
* * * *
220690 AAACATGCAATTACGATTTGTTTTAACCAATAATAATAAAAAAATTCAACTTAAAATCATCTATA
66 AAACATCCAATTACGATCTGTTTTAACCAAAAATAA-AAAAAAATTCAACTTAAAATCATTTATA
* * *
220755 AGAGTATAAATCATTCAAAACGAGTAACTAGACTTTCAAAC
130 AGAGTATAAACCATTCAAAGCGAGTAACTAGACTTTCAAAG
* * * * *
220796 GCATGAGTGACTATAAATGGACTTCTCTGGTCAA-GGAATGGCTTTTGTTTCACGTTTCTTAAGG
1 GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGG-ATGGCTTTTGCTTCATGTTTCTTGAGG
* * * *
220860 CAAAAATCCAATTATGATATCTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATA
65 CAAACATCCAATTACGATCTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATA
* * *
220924 AGAGTATAAATCATTCAAAGCGAGTAACTAGCCTTTCGAAG
130 AGAGTATAAACCATTCAAAGCGAGTAACTAGACTTTCAAAG
* * * * *
220965 GCATGAGTGACTATAAATGGACCTTTT-TTG-CTACTGGATGGCTTTCGCTTTATGTTTCCTGAG
1 GCATGAGTGACTATAAATGGA-CTTTTCTAGTC-AATGGATGGCTTTTGCTTCATGTTTCTTGAG
** * * *
221028 GCAAACATCCAATTTGGATCTGTTTTAACTATAAATGAAAAAAAAATTCTACTTAAAATCATTTA
64 GCAAACATCCAATTACGATCTGTTTTAACCAAAAAT-AAAAAAAAATTCAACTTAAAATCATTTA
* * * * * * *
221093 TAAGATTATAAAACATTTTAAAGTGAGTAATTTA-TCTTTCGAAG
128 TAAGAGTATAAACCA-TTCAAAGCGAGTAA-CTAGACTTTCAAAG
* * * * * * * * * ** *
221137 GAATGAATGATTCTAAATGGACTTTTCTTGTTAATTGATAGTTTTTTATTCACT-TTTCTTGAGA
1 GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTGAGG
* * * * * * * *
221201 AAAACATCCAATT-CTGATTTGTTTTGACCAAAAATGAAAAACATTTCAATTTAAAGTCA--TAT
65 CAAACATCCAATTAC-GATCTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTAT
** * *
221263 ATTA-TA-AAACCATTGAAAGCGAGTAACTAGGCTTTCAAAG
129 AAGAGTATAAACCATTCAAAGCGAGTAACTAGACTTTCAAAG
* * * *
221303 GTC-TGAGTGATTATAAATAGACTTTTCTTA-TCCATGGATAGCTTTTGCTTCATGTTT-TTGAA
1 G-CATGAGTGACTATAAATGGACTTTTC-TAGTCAATGGATGGCTTTTGCTTCATGTTTCTTG-A
** * * * * * * * * *
221365 GTTAAACATCCATTTATGATCTATTTT-ATCAAAAATTTAAAAAAAATACGACGTAAAATAATTT
63 GGCAAACATCCAATTACGATCTGTTTTAACCAAAAA-TAAAAAAAAATTCAACTTAAAATCATTT
* *
221429 ATAAGATTATAAAACCATTGAAAGCGAGTAACTA-ATCTTTCAAAG
127 ATAAGAGTAT-AAACCATTCAAAGCGAGTAACTAGA-CTTTCAAAG
* * * ** *
221474 GCATGAGTGGCTATAAATGGACTTTTATTGTCAATGGATGGCTTCCGCTTTATG-TT-TTGCAAG
1 GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCATGTTTCTTG--AG
* * *
221537 GCAAACATTCAATTACGATCTATTTTAACCAAAAAT-AAAAAATA-TCAACTTAAAATCATTTAT
64 GCAAACATCCAATTACGATCTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTAT
* * * * * *
221600 AAGACTATAAATCATTCAGAA-TGAGTAACAAGCCTTTTAAAG
129 AAGAGTATAAACCATTCA-AAGCGAGTAACTAGACTTTCAAAG
* * * *
221642 GCATGAGTGACTATATATGGACTTTTCTTGTCAATAGATAGCTTTTGCTTCACT-TTTCTTGAGG
1 GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTGAGG
* * * * *
221706 AAAATATCCAATTATGATCTGTTTTAACCAAATATAAAAAAAAACTCAAC
65 CAAACATCCAATTACGATCTGTTTTAACCAAAAATAAAAAAAAATTCAAC
221756 CATTTAAATT
Statistics
Matches: 915, Mismatches: 176, Indels: 80
0.78 0.15 0.07
Matches are distributed among these distances:
165 13 0.01
166 98 0.11
167 6 0.01
168 108 0.12
169 180 0.20
170 113 0.12
171 273 0.30
172 121 0.13
173 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
GCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGC
AAACATCCAATTACGATCTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATAA
GAGTATAAACCATTCAAAGCGAGTAACTAGACTTTCAAAG
Found at i:221156 original size:341 final size:335
Alignment explanation
Indices: 220455--223774 Score: 1695
Period size: 341 Copynumber: 9.9 Consensus size: 335
220445 TATTTAGAAA
* * * ** * *
220455 GCATGAGTGACTATAAATGGACTTTTCTTATCAATCGATGGCTTTTGCTTCATATTTTTTGAGGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTCTTAAGGC
** * * **
220520 AAAAATATAATTATGATGTGTTTTAACTAAAAATAAAAAAAAAACAACTTAAAATCATTTATAAG
66 AAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAG
* * ** *
220585 AGTATAAAACCATTGAAAGTGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATGGACTTC
131 AGTAT-AAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTT
* * * * * * * *
220650 TCTAGTAAATGGATGGCTTTCACTACATGCTTCTCGAGGCAAACATGCAATTACGATTTGTTTTA
195 TCTTGTAAATGGATAGCTTTCGCTTCATGTTTCT-GAGGCAAACATCCAATT-TGATCTGTTTTA
* * * *
220715 ACCAATAATAATAAAAAAATTCAACTTAAAATCATCTATAAGAGTATAAATCATTCAAAACGAGT
258 ACCAA-AATAA-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACATTCAAAGCGAGT
* * *
220780 AACTAGACTTTCAAAC
321 AATTA-TCTTTCAAAG
* *
220796 GCATGAGTGACTATAAATGGACTTCTCTGGTCAA-GGAATGGCTTTTGTTTCACGTTTCTTAAGG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG-ATGGCTTTTGTTTCACGTTTCTTAAGG
*
220860 CAAAAATCCAATTATGATATCTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
65 CAAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* *
220925 GAGTATAAATCATTCAAAGCGAGTAACTAGCCTTTCGAAGGCATGAGTGACTATAAATGGACCTT
130 GAGTATAAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGA-CTT
* * *
220990 TT-TTGCT-ACTGGATGGCTTTCGCTTTATGTTTCCTGAGGCAAACATCCAATTTGGATCTGTTT
194 TTCTTG-TAAATGGATAGCTTTCGCTTCATGTTT-CTGAGGCAAACATCCAATTT-GATCTGTTT
* * * *
221053 TAACTATAAATGAAAAAAAAATTCTACTTAAAATCATTTATAAGATTATAAAACATTTTAAAGTG
256 TAACCA-AAAT-AAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACA-TTCAAAGCG
*
221118 AGTAATTTATCTTTCGAAG
318 AGTAA-TTATCTTTCAAAG
* * * * * * * * * *
221137 GAATGAATGATTCTAAATGGACTTTTCTTGTTAATTGATAG-TTTTTTATTCACTTTTCTTGA-G
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGT-TTCACGTTTCTTAAGG
* * * * * * * *
221200 AAAAACATCCAATTCTGATTTGTTTTGACCAAAAATGAAAAACATTTCAATTTAAAGTCA--TAT
65 CAAAA-ATCCAATTATGATATGTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTAT
** * * * *
221263 ATTA-TA-AAACCATTGAAAGCGAGTAACTAGGCTTTCAAAGGTC-TGAGTGATTATAAATAGAC
128 AAGAGTATAAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGG-CATGAGTGACTATAAATGGAC
* ** * * ** * *
221325 TTTTCTTATCCATGGATAGCTTTTGCTTCATGTTTTTGAAGTTAAACATCCATTTATGATCTATT
192 TTTTCTTGTAAATGGATAGCTTTCGCTTCATGTTTCTG-AGGCAAACATCCAATT-TGATCTGTT
* * * * * * * *
221390 TTATCAAAAATTTAAAAAAAATACGACGTAAAATAATTTATAAGATTATAAAACCATTGAAAGCG
255 TTAACCAAAA-TAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CATTCAAAGCG
*
221455 AGTAACTAATCTTTCAAAG
318 AGTAA-TTATCTTTCAAAG
* * ** * *
221474 GCATGAGTGGCTATAAATGGACTTTTATTGTCAATGGATGGCTTCCGCTTT-ATGTTT-TGCAAG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTG-TTTCACGTTTCT-TAAG
* * * * * *
221537 GCAAACATTCAATTACGATCTATTTTAACCAAAAATAAAAAATA-TCAACTTAAAATCATTTATA
64 GCAAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * * * *
221601 AGACTATAAATCATTCAGAA-TGAGTAACAAGCCTTTTAAAGGCATGAGTGACTATATATGGACT
129 AGAGTATAAACCATTCA-AAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * *
221665 TTTCTTGTCAATAGATAGCTTTTGCTTCACT-TTTCTTGAGGAAAATATCCAATTATGATCTGTT
193 TTTCTTGTAAATGGATAGCTTTCGCTTCA-TGTTTC-TGAGGCAAACATCCAATT-TGATCTGTT
* * * * * ** * **
221729 TTAACCAAATATAAAAAAAAACTCAACCATTTAAATTGACTAACCAGTATT-T-AGA-AGGC--A
255 TTAACCAAA-ATAAAAAAAAATTCAA-C--TTAAAATCATTTATAAG-ATTATAAAACATTCAAA
* * *
221789 -TGAGTGATTA----TAAATAG
315 GCGAGTAATTATCTTTCAA-AG
* * *** * ** * * **
221806 ACTTTTCTTGACAATGGATGG-CTTTTGC-T-TC-----AT-G--TTT-TTT-AAG--GCAAAAA
1 GC-ATGAGTGACTATAAATGGACTTTT-CTTGTCAATGGATGGCTTTTGTTTCACGTTTC-TTAA
** ** * * * *** ** * ** ** * * * **
221856 TCCAATTAT-GATATCT-T-TTA-ATCAAAAATAAAAAGAAATGCAGCTTAAAATCATTTATCA-
63 GGCAAAAATCCA-AT-TATGATATGTTTTAACCAAAAATAAA-AAAAATTCAACTTA-AAATCAT
* * * ** * ** *** * * *
221916 -GAT--TA-TA-CAACCATTGTAAGTGAGTAACTAGTATTTAGGAGGTATGAGTCACTATAAGTG
124 TTATAAGAGTATAAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * * * * *
221976 GACTTCTCTAGTCAATGAATGGCTTTCGCTTCATGCTTTTTAATGCAAACATCCAATTATGATAT
189 GACTTTTCTTGTAAATGGATAGCTTTCGCTTCATG-TTTCTGAGGCAAACATCCAATT-TGATCT
** * * * * *
222041 GTTTTAACCAATAAT-AAAAATGATTCAACTTAAAATTATTTATAAGAGTATAAATCATTTAAAA
252 GTTTTAACCAA-AATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACATTCAAAG
* * *
222105 CGAGTAACTACACTTTCGAAG
316 CGAGTAATTA-TCTTTCAAAG
* * ** * * *
222126 ACATGAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTT-ACATTTCTCAAGA
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTT-TGTTTCACGTTTCTTAAGG
* * * * *
222190 CAAACATCTAATTATGATCTGTTTTAACAAAAAATGAAAAAAAGATTCAACTTAAAATCATTTAA
65 CAAAAATCCAATTATGATATGTTTTAACCAAAAAT-AAAAAAA-ATTCAACTTAAAATCATTTAT
* * * *
222255 AAGAGTATAAAACCATTTAAAGCGAGTAACTTGTCTTTCAAGGGCATGAGTGACTATAAATGGAC
128 AAGAGTAT-AAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * * *
222320 TTTTATTGTGAATGGATGGCTTTCACTTCACGTTTCTCAGGGTAAACATCCACTGATGA-CTTAT
192 TTTTCTTGTAAATGGATAGCTTTCGCTTCATGTTTCTGA-GGCAAACATCCAAT-TTGATC-TGT
* * * * * * * *
222384 TTTAGCTAAAA-AGAAAAAAAATTCAACCTAAAATCATCTACATA-ATTCTAAAATTATTAAAAG
254 TTTAACCAAAATA-AAAAAAAATTCAACTTAAAATCATTTATA-AGATTATAAAA-CATTCAAAG
* ** * * *
222447 CGGGTAACAAGCCATTCCAAG
316 CGAGTAATTA-TCTTTCAAAG
* * ** * * *
222468 GCATGAGTGACCATAAATAGACTTTTCTT-TCTAATCTATAGCTTTTGCTCCACGTTT-TCTAAG
1 GCATGAGTGACTATAAATGGACTTTTCTTGTC-AATGGATGGCTTTTGTTTCACGTTTCT-TAAG
* * * * * * * ** *
222531 GCAAACATCTAATTATGATCTGTATGAACTAAAAATAGAAAAAA-TCAAGGTAAAATCATTTACA
64 GCAAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
* * * ** *
222595 AGACTATAAATCACTT-AAAGCGAGTAATTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACT
129 AGAGTATAAACCA-TTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * ** * *
222659 ATCCTTGTCACTAGATGGCTTTCGTTTTATGTTTCCCAAGGCAATA-ATCAAATTATAATCTGTT
193 TTTCTTGTAAATGGATAGCTTTCGCTTCATGTTT-CTGAGGCAA-ACATCCAATT-TGATCTGTT
* * * * * *
222723 TTAGTCAAAAATGACAAAAAAGTTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAAC
255 TTA-ACCAAAAT-AAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-CATTCAAAGC
* * * *
222788 AAGTAACTAGTATTTCGAAG
317 GAGTAATTA-TCTTTCAAAG
* * ** * * *
222808 GTA-GTAGTGGCTATAAATGGACTTTTCTTACCAATGGATAG-TTTTCGCTTCACATTTC-TAGA
1 GCATG-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTT-GTTTCACGTTTCTTA-A
* * * *
222870 GG-TAAAATCCAATTATGATATGTTGTAATCAAAAATAAAAAAAA-TCAACTTAAAATCATTTAC
63 GGCAAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTAT
* * * * ** ** * * * *
222933 AAGATTATAAAACCATTTAAAGAGAGTAAGTAGTATTTTGAAGGTATAAGTGATTATAAATAGAC
128 AAGAGTAT-AAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * * * *
222998 TTTTTTTGTCAATAGATGGCTTTTGC-TC---CTT-GGA-GAAAACATACAATGATGATTTGTTT
192 TTTTCTTGTAAATGGATAGCTTTCGCTTCATGTTTCTGAGGCAAACATCCAAT-TTGATCTGTTT
* *
223057 TAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTATGAGATTATAAAACCAATT-AAAGTG
256 TAACC-AAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAA-C-ATTCAAAGCG
* * * * **
223121 ATTGACTAGTATTTTGAAG
318 AGTAATTA-TCTTTCAAAG
* * * *** * * *
223140 GCATAAGT-AGCCATAAATGGGCTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTCCTGAGG
1 GCATGAGTGA-CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTCTTAAGG
* * * * ** * * * * *
223204 CAAAGATACAATTATAATCTGTAATAACAAAAAACAAAAAAAATTCATCCTAAAATCATGTATAA
65 CAAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAA
* * * ** * ** * * * *
223269 GATTATAAAACCATTTAGAGAAAGT-ACTCAGGCTTTTGAAGGCATGAATGAGTATAGATAGACT
130 GAGTAT-AAACCATTCAAAGCGAGTAACT-AGCCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * ** *
223333 TTTCTTCTCAATTGATAGCTTTCGCATCA-GATTTCCAAAGGCAAACATCCAATTATGATATGTT
193 TTTCTTGTAAATGGATAGCTTTCGCTTCATG-TTT-CTGAGGCAAACATCCAATT-TGATCTGTT
* * * * *
223397 TTAACCAAAAACAAAAAAAAAACTCAACTTAAAATCATTTACAAGATTATAAAGCCATTTAAAGC
255 TTAACC-AAAA-TAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAA-ACATTCAAAGC
* * * *
223462 GTGTAAGTAGTATTTCGAAG
317 GAGTAATTA-TCTTTCAAAG
* * * * * * *
223482 GTATGAGTGACTATAAATAGACCTTTCTTGTAAATGGATGGCTCTTGCTTCACGTTTCTCAAGGC
1 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTCTTAAGGC
** * ***
223547 AAGCATCCAATTATGATCTGTTTTAGTAAAAAATAAAAAAAAATTCAACTTAAAATCATTTATAA
66 AAAAATCCAATTATGATATGTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * *
223612 GA-TGATAAAACCATTTAACGAGAGTAACTTGCCTTTCAAGGGCATGAGTGACTATAAATGAACT
130 GAGT-AT-AAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
223676 TTTCTTGTTAATGGATGGCTTTCGCTTCACGTTTCTTAAAGCAAACATCCAATGATGATTTGTTT
193 TTTCTTGTAAATGGATAGCTTTCGCTTCATGTTTC-TGAGGCAAACATCCAAT-TTGATCTGTTT
**
223741 TAATGAAAA-ATAAAAAAAA-T-AACCTTAAAATCAT
256 TAACCAAAATA-AAAAAAAATTCAA-CTTAAAATCAT
223775 CTACATGGTT
Statistics
Matches: 2259, Mismatches: 573, Indels: 295
0.72 0.18 0.09
Matches are distributed among these distances:
310 2 0.00
311 12 0.01
312 1 0.00
313 2 0.00
314 13 0.01
315 97 0.04
316 13 0.01
317 1 0.00
318 12 0.01
319 16 0.01
320 24 0.01
321 14 0.01
323 1 0.00
325 1 0.00
326 4 0.00
327 1 0.00
329 2 0.00
331 10 0.00
332 125 0.06
333 77 0.03
334 102 0.05
335 25 0.01
336 14 0.01
337 137 0.06
338 198 0.09
339 222 0.10
340 344 0.15
341 388 0.17
342 267 0.12
343 130 0.06
344 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (335 bp):
GCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGTTTCACGTTTCTTAAGGC
AAAAATCCAATTATGATATGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAG
AGTATAAACCATTCAAAGCGAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTT
CTTGTAAATGGATAGCTTTCGCTTCATGTTTCTGAGGCAAACATCCAATTTGATCTGTTTTAACC
AAAATAAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACATTCAAAGCGAGTAATTA
TCTTTCAAAG
Found at i:222336 original size:172 final size:168
Alignment explanation
Indices: 221783--223808 Score: 1623
Period size: 171 Copynumber: 11.9 Consensus size: 168
221773 CAGTATTTAG
* * * * * *
221783 AAGGCATGAGTGATTATAAATAGACTTTTCTTGACAATGGATGGCTTTTGCTTCATGTTTTTTAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* * * * *
221848 GGCAAAAATCCAATTATGATATCTTTTAATCAAAAATAAAAAGAAATGCAGCTTAAAATCATTTA
66 GGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATAAAAA-AAATTCAACTTAAAATCATTTA
* * * *
221913 TCAGATTATACAACCATTGT-AAGTGAGTAACTAGTATTT-
129 TAAGATTATAAAACCATT-TAAAGCGAGTAACTAGTCTTTC
* * * * * * * *
221952 AGGAGGTATGAGTCACTATAAGTGGACTTCTCTAGTCAATGAATGGCTTTCGCTTCATGCTTT-T
1 A--AGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCT
* * * * ** *
222016 TAATGCAAACATCCAATTATGATATGTTTTAACCAATAATAAAAATGATTCAACTTAAAATTATT
63 CAAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATAAAAAAAATTCAACTTAAAATCATT
* * * **
222081 TATAAGAGTAT-AAATCATTTAAAACGAGTAACTACACTTTC
127 TATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
* * * * * *
222122 GAAGACATGAGTGAATATAAATGGACTTTTCTTGTCAATGGATGGCTTTCACTTTACATTTCTCA
1 -AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA
* *
222187 AGACAAACATCTAATTATGATCTGTTTTAACAAAAAATGAAAAAAAGATTCAACTTAAAATCATT
65 AGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAAT-AAAAAAA-ATTCAACTTAAAATCATT
* * *
222252 TAAAAGAGTATAAAACCATTTAAAGCGAGTAACTTGTCTTTC
127 TATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
* * * *
222294 AAGGGCATGAGTGACTATAAATGGACTTTTATTGTGAATGGATGGCTTTCACTTCACGTTTCTCA
1 AA-GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCA
* * * * * * * * *
222359 GGGTAAACATCCACTGATGA-CTTATTTTAGCTAAAAAGAAAAAAAATTCAACCTAAAATCATCT
65 AGGCAAACATCCAATTATGATC-TGTTTTAAC-AAAAATAAAAAAAATTCAACTTAAAATCATTT
* * ** * * * * *
222423 ACATA-ATTCTAAAATTATTAAAAGCGGGTAACAAGCCATTCC
128 ATA-AGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTC
* ** * * *
222465 AAGGCATGAGTGACCATAAATAGACTTTTCTT-TCTAATCTATAGCTTTTGCTCCACGTTT-TCT
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTC-
* * * * **
222528 AAGGCAAACATCTAATTATGATCTGTATGAACTAAAAATAGAAAAAA-TCAAGGTAAAATCATTT
64 AAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATAAAAAAAATTCAACTTAAAATCATTT
* * * * * * *
222592 ACAAGACTAT-AAATCACTTAAAGCGAGTAATTAGCCTTTTG
128 ATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTC-TTTC
* * * * * * * *
222633 AAGGCATGAGTGACTATAAATAGACTATCCTTGTCACTAGATGGCTTTCGTTTTATGTTTCCCAA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* * * *
222698 GGCAATA-ATCAAATTATAATCTGTTTTAGTCAAAAATGACAAAAAAGTTCAACTTAAAATCATT
66 GGCAA-ACATCCAATTATGATCTGTTTTA-ACAAAAAT-A-AAAAAAATTCAACTTAAAATCATT
* * *
222762 TATAAGATTATAAAACCATTTAAAACAAGTAACTAGTATTTC
127 TATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
* * * ** * * *
222804 GAAGGTA-GTAGTGGCTATAAATGGACTTTTCTTACCAATGGATAGTTTTCGCTTCACATTTCT-
1 -AAGGCATG-AGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC
* * *
222867 AGAGGTAAA-ATCCAATTATGATATGTTGTAATCAAAAATAAAAAAAA-TCAACTTAAAATCATT
64 A-AGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATAAAAAAAATTCAACTTAAAATCATT
* * * * *
222930 TACAAGATTATAAAACCATTTAAAGAGAGTAAGTAGTATTTTG
127 TATAAGATTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTC
* * * * * * **
222973 AAGGTATAAGTGATTATAAATAGACTTTTTTTGTCAATAGATGGCTTTTGC-TC-C---T-TGGA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
* * * *
223032 -GAAAACATACAATGATGATTTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAAATCATTTA
66 GGCAAACATCCAATTATGATCTGTTTTAA-CAAAAAT-AAAAAAAATTCAACTTAAAATCATTTA
* * * * * * *
223096 TGAGATTATAAAACCAATTAAAGTGATTGACTAGTATTTTG
129 TAAGATTATAAAACCATTTAAAGCGAGTAACTAGT-CTTTC
* * * * * *
223137 AAGGCATAAGT-AGCCATAAATGGGCTTTTCTTGTCAATGGATGGCTTTCACTTCACATTTC-CT
1 AAGGCATGAGTGA-CTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-
* * * * ** * * * *
223200 GAGGCAAAGATACAATTATAATCTGTAATAACAAAAAACAAAAAAAATTCATCCTAAAATCATGT
64 AAGGCAAACATCCAATTATGATCTGTTTTAAC-AAAAATAAAAAAAATTCAACTTAAAATCATTT
* ** * *
223265 ATAAGATTATAAAACCATTTAGAGAAAGT-ACTCAGGCTTTTG
128 ATAAGATTATAAAACCATTTAAAGCGAGTAACT-AGTC-TTTC
* * * * * * *
223307 AAGGCATGAATGAGTATAGATAGACTTTTCTTCTCAATTGATAGCTTTCGCATCA-GATTTC-CA
1 AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTCTC-
* * *
223370 AAGGCAAACATCCAATTATGATATGTTTTAACCAAAAACAAAAAAAAAACTCAACTTAAAATCAT
64 AAGGCAAACATCCAATTATGATCTGTTTTAA-C-AAAA-ATAAAAAAAATTCAACTTAAAATCAT
* * * * *
223435 TTACAAGATTATAAAGCCATTTAAAGCGTGTAAGTAGTATTTC
126 TTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
* * *
223478 GAAGGTATGAGTGACTATAAATAGACCTTTCTTGTAAATGGATGGCTCTT-GCTTCACGTTTCTC
1 -AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCT-TTCGCTTCACGTTTCTC
*
223542 AAGGCAAGCATCCAATTATGATCTGTTTTAGTA-AAAAATAAAAAAAAATTCAACTTAAAATCAT
64 AAGGCAAACATCCAATTATGATCTGTTTTA--ACAAAAAT-AAAAAAAATTCAACTTAAAATCAT
* * * * *
223606 TTATAAGATGATAAAACCATTTAACGAGAGTAACTTGCCTTTC
126 TTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
* *
223649 AAGGGCATGAGTGACTATAAAT-GAACTTTTCTTGTTAATGGATGGCTTTCGCTTCACGTTTCTT
1 AA-GGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC
* * * * *
223713 AAAGCAAACATCCAATGATGATTTGTTTTAATGAAAAATAAAAAAAA-T-AACCTTAAAATCATC
64 AAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAATAAAAAAAATTCAA-CTTAAAATCATT
* * * * *
223776 TACATGGTTCTAAAACCTTTTAAAGCGAGTAAC
127 TATAAGATTATAAAACCATTTAAAGCGAGTAAC
223809 AAGCCATCCC
Statistics
Matches: 1477, Mismatches: 313, Indels: 134
0.77 0.16 0.07
Matches are distributed among these distances:
161 4 0.00
162 27 0.02
163 10 0.01
164 92 0.06
165 2 0.00
166 2 0.00
167 2 0.00
168 192 0.13
169 178 0.12
170 296 0.20
171 365 0.25
172 300 0.20
173 6 0.00
174 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (168 bp):
AAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA
GGCAAACATCCAATTATGATCTGTTTTAACAAAAATAAAAAAAATTCAACTTAAAATCATTTATA
AGATTATAAAACCATTTAAAGCGAGTAACTAGTCTTTC
Found at i:223523 original size:342 final size:340
Alignment explanation
Indices: 221753--223808 Score: 1651
Period size: 340 Copynumber: 6.1 Consensus size: 340
221743 AAAAAAACTC
** * * * * * *
221753 AACCATTTAAATTGACTAACCAGTATTTAGAAGGCATGAGTGATTATAAATAGACTTTTCTTGAC
1 AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* ** * * * * * *
221818 AATGGATGGCTTTTGCTTCATGTTTTTTAAGGCAAAAATCCAATTATGATATCTTTTAATC-AAA
66 AATGGATGGCTTTCGCTTCACATTTCTCAAGGCAAACAT-CAATTATGATCTGTTATAA-CAAAA
* * * *
221882 AATAAAAAGAAATGCAGCTTAAAATCATTTATC-AGATTATACAACCATTGT-AAGTGAGTAACT
129 AATAAAAA-AAATTCAACTTAAAATCATTTA-CAAGATTATAAAACCATT-TAAAGAGAGTAACT
** * * * * * * * *
221945 AGTATTTAGGAGGTATGAGTCACTATAAGTGGACTTCTCTAGTCAAT-GAATGGCTTTCGCTTCA
191 AGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAG-ATGGCTTTCGCTTCA
* ** * * * * **
222009 TGCTTT-TTAATGCAAACATCCAATTATGATATGTTTTAACC-AATAATAAAAATGATTCAACTT
255 CG-TTTCCAAAGGCAAACATCCAATGATGATATGTTTTAACCAAAAAAAAAAAAAAATTCAACTT
* *
222072 AAAATTATTTATAAGAGTAT-A
319 AAAATCATTTATAAGATTATAA
* * * * *
222093 AATCATTTAAAACGAGTAACTA-CACTTTCGAAGACATGAGTGAATATAAATGGACTTTTCTTGT
1 AACCATTTAAAGCGAGTAACTAGTA-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
* * * *
222157 CAATGGATGGCTTTCACTTTACATTTCTCAAGACAAACATCTAATTATGATCTGTTTTAACAAAA
65 CAATGGATGGCTTTCGCTTCACATTTCTCAAGGCAAACATC-AATTATGATCTGTTATAACAAAA
* * * *
222222 AATGAAAAAAAGATTCAACTTAAAATCATTTAAAAGAGTATAAAACCATTTAAAGCGAGTAACTT
129 AAT-AAAAAAA-ATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACTA
* * * * * * *
222287 GTC-TTTCAAGGGCATGAGTGACTATAAATGGACTTTTATTGTGAATGGATGGCTTTCACTTCAC
192 GGCTTTTGAA-GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCAC
* * * * * * * *
222351 GTTTCTC-AGGGTAAACATCCACTGATGACT-TATTTT-AGCTAAAAAGAAAAAAAATTCAACCT
256 GTTTC-CAAAGGCAAACATCCAATGATGA-TATGTTTTAACCAAAAAAAAAAAAAAATTCAACTT
* * *
222413 AAAATCATCTACATA-ATTCTAA
319 AAAATCATTTATA-AGATTATAA
** * * * * * * *
222435 AATTATTAAAAGCGGGTAACAAGCCA-TTCCAAGGCATGAGTGACCATAAATAGACTTTTCTT-T
1 AACCATTTAAAGCGAGTAACTAG-TATTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGT
** * * * * *
222498 CTAATCTATAGCTTTTGCTCCACGTTT-TCTAAGGCAAACATCTAATTATGATCTG-TATGAACT
65 C-AATGGATGGCTTTCGCTTCACATTTCTC-AAGGCAAACATC-AATTATGATCTGTTAT-AACA
* ** * * * * *
222561 AAAAATAGAAAAAA-TCAAGGTAAAATCATTTACAAGACTAT-AAATCACTTAAAGCGAGTAATT
126 AAAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACT
* * * * * * *
222624 AGCCTTTTGAAGGCATGAGTGACTATAAATAGACTATCCTTGTCACTAGATGGCTTTCGTTTTAT
191 AGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCAC
* * * * * ** * * *
222689 GTTTCCCAAGGCAATA-ATCAAATTATAATCTGTTTTAGTCAAAAATGACAAAAAAGTTCAACTT
256 GTTTCCAAAGGCAA-ACATCCAATGATGATATGTTTTAACCAAAAA-AAAAAAAAAATTCAACTT
222753 AAAATCATTTATAAGATTATAA
319 AAAATCATTTATAAGATTATAA
* * * * **
222775 AACCATTTAAAACAAGTAACTAGTATTTCGAAGGTA-GTAGTGGCTATAAATGGACTTTTCTTAC
1 AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCATG-AGTGACTATAAATGGACTTTTCTTGT
* * * * *
222839 CAATGGATAGTTTTCGCTTCACATTTCT-AGAGGTAAA-ATCCAATTATGATATGTTGTAATC-A
65 CAATGGATGGCTTTCGCTTCACATTTCTCA-AGGCAAACAT-CAATTATGATCTGTTATAA-CAA
*
222901 AAAATAAAAAAAA-TCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAAGTA
127 AAAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACTA
** * * * * *
222965 GTATTTTGAAGGTATAAGTGATTATAAATAGACTTTTTTTGTCAATAGATGGCTTTTGC-TC-C-
192 GGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACG
** * * * *
223027 -TT--GGA-GAAAACATACAATGATGATTTGTTTTAACCAAAAATAAAAAAAAATTCAACTTAAA
257 TTTCCAAAGGCAAACATCCAATGATGATATGTTTTAACCAAAAAAAAAAAAAAATTCAACTTAAA
*
223088 ATCATTTATGAGATTATAA
322 ATCATTTATAAGATTATAA
* * * * * * * *
223107 AACCAATTAAAGTGATTGACTAGTATTTTGAAGGCATAAGT-AGCCATAAATGGGCTTTTCTTGT
1 AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTGT
* * * * *
223171 CAATGGATGGCTTTCACTTCACATTTC-CTGAGGCAAAGATACAATTATAATCTGTAATAACAAA
65 CAATGGATGGCTTTCGCTTCACATTTCTC-AAGGCAAACAT-CAATTATGATCTGTTATAACAAA
* * * * * * *
223235 AAACAAAAAAAATTCATCCTAAAATCATGTATAAGATTATAAAACCATTTAGAGAAAGT-ACTCA
128 AAATAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACT-A
* * * * * * *
223299 GGCTTTTGAAGGCATGAATGAGTATAGATAGACTTTTCTTCTCAATTGATAGCTTTCGCATCA-G
192 GGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACG
* *
223363 ATTTCCAAAGGCAAACATCCAATTATGATATGTTTTAACCAAAAACAAAAAAAAAACTCAACTTA
257 -TTTCCAAAGGCAAACATCCAATGATGATATGTTTTAACCAAAAA-AAAAAAAAAATTCAACTTA
*
223428 AAATCATTTACAAGATTATAA
320 AAATCATTTATAAGATTATAA
* * * * * * *
223449 AGCCATTTAAAGCGTGTAAGTAGTATTTCGAAGGTATGAGTGACTATAAATAGACCTTTCTTGTA
1 AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
* * * **
223514 AATGGATGGCTCTT-GCTTCACGTTTCTCAAGGCAAGCATCCAATTATGATCTGTTTTAGTAAAA
66 AATGGATGGCT-TTCGCTTCACATTTCTCAAGGCAAACAT-CAATTATGATCTGTTATAACAAAA
* * * *
223578 AATAAAAAAAAATTCAACTTAAAATCATTTATAAGATGATAAAACCATTTAACGAGAGTAACT-T
129 AAT-AAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACTAG
* * * *
223642 GCCTTTCAAGGGCATGAGTGACTATAAAT-GAACTTTTCTTGTTAATGGATGGCTTTCGCTTCAC
193 GCTTTTGAA-GGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATAGATGGCTTTCGCTTCAC
* * ** *
223706 GTTTCTTAAA-GCAAACATCCAATGATGATTTGTTTTAA-TGAAAAATAAAAAAAA-T-AACCTT
256 GTTTC-CAAAGGCAAACATCCAATGATGATATGTTTTAACCAAAAAAAAAAAAAAATTCAA-CTT
* * * * *
223767 AAAATCATCTACATGGTTCTAA
319 AAAATCATTTATAAGATTATAA
*
223789 AACCTTTTAAAGCGAGTAAC
1 AACCATTTAAAGCGAGTAAC
223809 AAGCCATCCC
Statistics
Matches: 1360, Mismatches: 292, Indels: 128
0.76 0.16 0.07
Matches are distributed among these distances:
332 116 0.09
333 57 0.04
334 89 0.07
335 2 0.00
336 2 0.00
337 2 0.00
338 89 0.07
339 96 0.07
340 326 0.24
341 199 0.15
342 248 0.18
343 125 0.09
344 9 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (340 bp):
AACCATTTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTC
AATGGATGGCTTTCGCTTCACATTTCTCAAGGCAAACATCAATTATGATCTGTTATAACAAAAAA
TAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAAGAGAGTAACTAGGCT
TTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCACGTTTC
CAAAGGCAAACATCCAATGATGATATGTTTTAACCAAAAAAAAAAAAAAATTCAACTTAAAATCA
TTTATAAGATTATAA
Found at i:225488 original size:169 final size:169
Alignment explanation
Indices: 224609--227192 Score: 1372
Period size: 169 Copynumber: 15.2 Consensus size: 169
224599 ATGGCTTACC
* * * * * ** * * **
224609 TTTCAAAAGCATGTGTGACTATAAATGGGCTCTTATCGTCAATGGATGGCTTTCGCTTCATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATTT
** * * ** * *
224674 CTCAAGATAAACATCTAATTATGATCTGTTTTAATGAAAAATAAAAAAATATTAAGTTAAAATCA
66 CTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAAAAT-TCAACTTAAAATCA
* * * * * * *
224739 TTTATAAGATTTTAAAACCATTTAAAGCGACTAACTAGTA
130 TTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
** * * * * ** ** * **
224779 TTTGGAAGGTATAAGTGACTATAAATAGATTTTTCTTGCCAAT-AGATGATTTTTGCTTTATGTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGA-ATGGCTTTCGCTTTACATT
** ** * * *
224843 TC-CTAAGGTGAACATTTAATTATTATCTATTTTAACAAAAAATTTTAAAAAAAATT-AACTTAA
65 TCTC-AAGGCAAACATCCAATTATGATATGTTTTAACAAAAAA---T-AAAAAAATTCAACTTAA
* * * * ** *
224906 AATCATTTATAAGATTACAAAACCATTTAAAGTGAGTAATTAGGC-
125 AATCATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTA-GCA
* * * * *
224951 TTTCAAAGGCATGAATGACTATAAATGAAAC-TTTCTTGTCAATTG-ATGGCTTTTGCTTCACAT
1 TTTCAAAGGCATGAGTGACTATAAATG-GACTTTTCTTATCAA-TGAATGGCTTTCGCTTTACAT
* * * * * * * *
225014 TT-TCTAATGTAAACATCAAATTACGATATGTGTTAACCAAAAATAAAAAAA-TCAATTTAAAGT
64 TTCTC-AAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAAAATTCAACTTAAAAT
* * * * *
225077 CATTTTTA-AAGTTACAAAATCATTTAAAATGAGTAACTAGCC
128 CATTTTTATGAG-TATAAAACCATTTAAAACGAGTAACTAGCA
* * * * *
225119 TTTCAAAGGTATGAGTGACTATAAATGGACTTTTGTTA-CAAATGGATGGCTTTGGCTTCACATT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATGAATGGCTTTCGCTTTACATT
* * *
225183 TCTCAAGGCAAACATCTAATTATGATTTGTTTTAACGAAAAATGAATACAAAAAATTTTAACTTA
65 TCTCAAGGCAAACATCCAATTATGATATGTTTTAAC--AAAA--AATA-AAAAAA-TTCAACTTA
* * * * **
225248 AAATCATTTATAAT-ATTGTGAAACCATTTAAAGTGAGTAACTAGTC-
124 AAATCATTT-TTATGAGTATAAAACCATTTAAAACGAGTAACTAG-CA
* * *
225294 TTTCAAAGGCATGAATGTA-TATAAATGGACTTTTCTTATCAATGAATAGCTTTCGCTTTGCATT
1 TTTCAAAGGCATGAGTG-ACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATT
* * * *
225358 CCTCAATGCAAA-ATTCAATTATGATATGTTTTAATAAAAAATGAAAAAAATTCAACTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAAT-AAAAAAATTCAACTTAAAATC
225422 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTCA-CA
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACT-AGCA
** ** ** * * * * **
225463 TTTTGAAGATATGAGTGGTTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTAATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATTT
** * * * * *
225528 CTTGAGGCAAACATCCGATTATGATTTGTTTTAATAAAAAATAAAAAAAATCAATTTAAAATCAT
66 CTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAAAATTCAACTTAAAATCAT
** * * * * *
225593 TTACAAGATTATAAAACCATTTAAATCAAGTAACTAGTA
131 TTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
* * * * * * *
225632 TTTCGAAGGCATGAGTGACTATAAGTGGACTTCTC-TAGTTAA-GAGATTGCTTTCACTTTATAT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA-TCAATGA-ATGGCTTTCGCTTTACAT
* * * *
225695 TTCTTAAGGCAAACATCCAATTATGATATGTTTTAACAAACAATTTAACAAAAATTTAACTTACA
64 TTCTCAAGGCAAACATCCAATTATGATATGTTTTAACAAA-AA-ATAA-AAAAATTCAACTTAAA
* * * * * *** * *
225760 ATCATTTATAAGACTAT-AAATCATTCAAAGTAAGTCACTAGCC
126 ATCATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
* * * * ** * * **
225803 TTTCAAAGGCATG-GTGGCTATAAATGGACTTTACTTGTCAATGGATGATTTTAGCTTCATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATTT
* * * * * *
225867 CAT-AAGGCAAATATCCAACTATGATCTATTTTAACAAAAAATGAAAAAAAATCAAGTTAAAATC
66 C-TCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAAT-AAAAAAATTCAACTTAAAATC
* * * * ** *
225931 -TTTATAAGATTATAAAACCATTTGAAGTGAGTAATTAGGC-
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTA-GCA
* * *
225971 TTTCAAAGGCATGAATGACTATAAATGGACTTTTCTTTTCAATTG-ATGGCGTTCGC-TT-CATG
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAA-TGAATGGCTTTCGCTTTACAT-
* ** * * ** * *
226033 TTTTTTAGTGTAAACATCAAATTATGATTTATG-CGTAACCAAAAATGAGAAAAAAGTT-AATTT
64 TTCTCAAG-GCAAACATCCAATTATGA--TATGTTTTAACAAAAAAT-A-AAAAAA-TTCAACTT
* * * * *
226096 AAAATCATTTATAAGATTATAAAATCACTTAAAACGAGTAACTAGGC-
123 AAAATCATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTA-GCA
* * * * * * * *
226143 TTTCAAAGG-ATGAATGACTATAAATGAACTTCTC-TAGTCAATGGATAGCTTTCACTTCACGTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA-TCAATGAATGGCTTTCGCTTTACATT
** * * **
226206 TCTTGAGGCAAACATCTAATTATAATATGTTTTAATGAAAAATAAGAAAAATTCAACTTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAA-AAAAATTCAACTTAAAATC
* * * *** * *
226271 ATTTATAAGATTATAAAACCATTTAAAGTAAGTAATTTGTC-
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAG-CA
* * * * * ** * *
226312 TTCCAAGGGCATGAGTAACTATAAATGAACTTTTCTTGTCAATGGGTAGCTTTCAG-TTTACGTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTC-GCTTTACATT
** ** * * * * *
226376 T-TCCAAGAAAAACATCCAACGATGATTTATTTTAATAAAAAATAAAAAAA-TCAATTTAGAATC
65 TCT-CAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAAAATTCAACTTAAAATC
* ** * * * ** *
226439 ATCTACAAGATTCTAAATTCATTTAAAGCGAGTAAC-AGGCCA
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTA-G-CA
* * * * * * * * ** *
226481 -ATCCAAGGTAT-ACATGACTTTAAATGGACTTTTTTTGTCAATGGATGGCTTT-TATTTCATAT
1 TTTCAAAGGCATGA-GTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTT-ACAT
* * * *
226543 TTTTCAAGGCAAATATTCAATTATGATATGTTTTAACCAAAAAAGAAAAGAAATTCAACTTAAAA
64 TTCTCAAGGCAAACATCCAATTATGATATGTTTTAA-CAAAAAATAAAA-AAATTCAACTTAAAA
* * * * *
226608 TCATTTATAAGATTATAAAATCATTTAAAACGAGTAACTAGTA
127 TCATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
* * * * **
226651 TTTCGAAGGCATGAATGGCTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTTTATGTTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATTT
* * * * *
226716 C-CTAAGGAAAACATCCATTTATGATCTG-TTTAACAAAAAAAGAAAAAAATTCAACTTAAAATT
66 CTC-AAGGCAAACATCCAATTATGATATGTTTTAAC-AAAAAATAAAAAAATTCAACTTAAAATC
** * * * ** *
226779 ATTTACAAGATTATAAAACTATTTAAATTGAGTAACTAGTA
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
* * * * * * * * **
226820 TTTCGAAGGAATAAGTGACTATAAATGGACTTCTC-TAGTCAAAGGATGGCTTTTGCTTCATGTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTA-TCAATGAATGGCTTTCGCTTTACATT
** * * * * *
226884 TCTTGAGGCAAATATCCAATTATGATATGTTTTAACTAAAATTAAAAAAAATTTAACCTAAAATC
65 TCTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAAT-AAAAAAATTCAACTTAAAATC
* * * * * * * *
226949 ATTTATAAGACTAT-AAATCATTTAGAATGTGTAACTAGCC
129 ATTTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
* * * * * ** * * *
226989 TTTCGAAGGTA-GTAGTCACAATAAATGGACTTTTCTTGTCAATTCACGGATTTCGCTTCACATT
1 TTTCAAAGGCATG-AGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATT
* * **** * * * * *
227053 TTTTACTATAAACATCAAATTATGATCTGTGTGTAACAAAAATAAAAACAAAAGTCAA-TCTAAA
65 TCTCAAGGCAAACATCCAATTATGATATGT-TTTAACAAAAA-ATAAA-AAAATTCAACT-TAAA
* * * * * **
227117 ATAATTTTTA-AAGTAAAAAAATCACTTAAATTGAGTAACTAGGC-
126 ATCATTTTTATGAGT-ATAAAACCATTTAAAACGAGTAACTA-GCA
* * *
227161 TTTCGAAGGCGTAAGTGACTATAAATGGACTT
1 TTTCAAAGGCATGAGTGACTATAAATGGACTT
227193 CACGTGTCTC
Statistics
Matches: 1898, Mismatches: 417, Indels: 196
0.76 0.17 0.08
Matches are distributed among these distances:
167 27 0.01
168 294 0.15
169 578 0.30
170 359 0.19
171 238 0.13
172 255 0.13
173 15 0.01
174 27 0.01
175 99 0.05
176 6 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (169 bp):
TTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATGAATGGCTTTCGCTTTACATTT
CTCAAGGCAAACATCCAATTATGATATGTTTTAACAAAAAATAAAAAAATTCAACTTAAAATCAT
TTTTATGAGTATAAAACCATTTAAAACGAGTAACTAGCA
Found at i:225752 original size:11 final size:12
Alignment explanation
Indices: 225726--225754 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
225716 TATGATATGT
225726 TTTAACAAACAA
1 TTTAACAAACAA
225738 TTTAACAAA-AA
1 TTTAACAAACAA
225749 TTTAAC
1 TTTAAC
225755 TTACAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (12 bp):
TTTAACAAACAA
Found at i:227933 original size:342 final size:340
Alignment explanation
Indices: 227242--230860 Score: 2516
Period size: 342 Copynumber: 10.6 Consensus size: 340
227232 AATGAAAGAC
* * *
227242 GAAAAAAAATTCAACTTTAGATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAACTTA-T-
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAA-TTAGTA
* * * * * * * * *
227305 CTTTCAAGGGCATGAATGACTATAAA-GAGACTTTTCTTATTAATAGATGGGTTTTAGTTCATGT
65 TTTTGAA-GGTATGAATGACTATAAATG-GACTTTTCTTATCAATGGATGGCTTTCACTTCACGT
* * * * *
227369 TTCTTGAGGCAAAAATCCAATGATGATTTGTTTTAAAC-AAAAATGAAAAAAAAATTCAACTTAA
128 TTCTCGAGACAAACATCCAATTATGATCTGTTTT-AACTAAAAATG-AAAAAAAATTCAACTTAA
* * * * * * * * * ** *
227433 AATCGTCTACAAGATTCTGAAACCATTTAAAGCAACTAAC-AATCCA-TTCCAAGGCACAATTGA
191 AATCATTTATAAGATTATAAAACCA-TTAAAGCGAGTAACTAGT--ATTTCGAAGGCATGAGTGA
* * * * ** * *
227496 CTATAAATAGACTTTTCTTGTTAATTGATGGCTTTCGTTTCACGTTTCTTGAGGC-AACATCTAA
253 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGTCAAACATCCAA
*
227560 TTATGATATGTTTTA-ACAGAAAAT
318 TTATGATCTGTTTTATA-A-AAAAT
* * * * *
227584 TAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGAAAGTAATAT
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTAT
* * * * *
227649 TTTGAAGGTACGAGTGACTATAAATAGATTTTTTTTTATCAATGGATGGCTTTCACTTCACGTTT
66 TTTGAAGGTATGAATGACTATAAATGGA-CTTTTCTTATCAATGGATGGCTTTCACTTCACGTTT
* * * * *
227714 CTCGAGACAAACATCCAATGATGATTTGCTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATC
130 CTCGAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATC
* * * *
227779 ATTTATGAGATTATAAAATCATTCAAAGTGACTAACTAGTATTTCGAAGGCATGAGTGACTATAA
195 ATTTATAAGATTATAAAACCATT-AAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAA
* * * * * * *
227844 ATAGATTTTTTCTTGTCAAAGGAT-GATTATTGCTTCATGTTTCTCAAGTCAAGCATCCAATTAT
259 ATGGA-CTTTTCTTGTCAATGGATGGCTT-TCGCTTCACGTTTCTCAAGTCAAACATCCAATTAT
* * *
227908 TATCTATTTTA-AAAATAT
322 GATCTGTTTTATAAAAAAT
* * * ** **
227926 G-AAAAAAATT-AACCTGAAAATCATTTATAAAATTACAAAACCATTTAAAACGAGTAATTAGGC
1 GAAAAAAAATTCAA-CTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTA
** * * * * * *
227989 TTTCAAAGGCATGAATGACTATAAATAGACTTTTCCTGTCAATTGATGGCTTTCGCTTCACGTTT
65 TTTTGAAGGTATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCACGTTT
* * * * *
228054 -TCCCATG-TAAACATCAAATTATGA-----TTTAA--AAACAATGAAAAAAGA-TCAATTTAAA
130 CT-CGA-GACAAACATCCAATTATGATCTGTTTTAACTAAA-AATGAAAAAAAATTCAACTTAAA
* * * * * * * * *
228109 ATCATTTTTAA-AGTAATAAAATCAATTAAAGTGAATACACAAG-CTTTCAAAGGCATTAGTGAC
192 ATCATTTATAAGA-TTATAAAA-CCATTAAAGCGAGTA-ACTAGTATTTCGAAGGCATGAGTGAC
* * * * * * ** *
228172 TATAAATGGACTTTTTTTGTAAATGTATAGCTTTTGATAT-ACGTTTCTTGA-TGCAAACATCTA
254 TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCT-TCACGTTTCTCAAGT-CAAACATCCA
* * *
228235 ATTATAATCTGTTTTAATTAAGAATT
317 ATTATGATCTGTTTT-A-TAAAAAAT
* * *
228261 TAAAAAAAGGTTCAACGTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGT-
1 GAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTA
* ** * * * * * * *
228325 TTGTTGAAGGCACAAATGATTGTAAATGGACTGTTCTTTTCAATTGATGGCTTTTGA-TTCACCT
65 TT-TTGAAGGTATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGC-TTTCACTTCACGT
* * * *
228389 TTCTCAAGACAAACATCCAATTATGATCTATTTTGACTAAAAGTGAAAAAAAAATTCTAA-TTAA
128 TTCTCGAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATG-AAAAAAAATTC-AACTTAA
* * * *
228453 AATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACT
191 AATCATTTATAAGATTATAAAACCATT-AAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACT
* * * * * ** * * *
228518 ATAAACGAACTTTTCTTGTCCATGGATGACTTTTGCTTCACGTTTCTTGAGGCAAACATCGAACT
255 ATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGTCAAACATCCAATT
* * *
228583 GTAATCTATTTTATGAAAAAAT
320 ATGATCTGTTTTAT-AAAAAAT
* * * * * * * * *
228605 GAAAAGAAA-TCAACTTAAGATAATTTATAAGATTATAAAACTATTGAAAATGATTAACTAG-AC
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTAT
* * * * * * *
228668 CTTCAAAGTCATGAAT-AGCTACAAATGGACTTTTCTTGTCAATGGATGGCTTT-GCTTCACATT
66 TTTGAAGGT-ATGAATGA-CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCACGTT
* *
228731 GTCTTTG-G-CAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAACAA-TCAACTTAA
129 -TC-TCGAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAA-AATTCAACTTAA
* * * * *
228793 AATCATTTACATGATTATAAAACCACTTAAAGCGAGTAACTAGCATTTTGAAGGCATGAGTGGCT
191 AATCATTTATAAGATTATAAAACCA-TTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGAC-
* * * *
228858 GTATAAATGGACTTTCCTTGTCAATGGATGGCTCTCACTTCACATTTC-CTAAGGT-AAACATCC
254 -TATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AA-GTCAAACATCC
*
228921 AATTATGATCTGTTTTAACAAAAAAT
316 AATTATGATCTGTTTT-ATAAAAAAT
* *
228947 GAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAAAACCATTTAAA-TCAAGTAATTAGTA
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT-GAGTAATTAGTA
* * * * * * * * *
229011 TTTTGAAGGCATGAGTTACTACAAATGGACTTCT-TTAGTCAATGAATGGTTTTCATTTCATGTT
65 TTTTGAAGGTATGAATGACTATAAATGGACTTTTCTTA-TCAATGGATGGCTTTCACTTCACGTT
* * ** *
229075 TCTCGAGATAAATATTTAATTATGATCTG-TTTAACTAAAAAT-AAAAAGAAATTTAACTTAAAA
129 TCTCGAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAA-AAATTCAACTTAAAA
* * * * * * *
229138 TCATTTATAAGATCAT-AAATCATTCAAAGCGAGTACCTCGCATCTCAAAGGCATGAGTGACTAT
193 TCATTTATAAGATTATAAAACCATT-AAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTAT
* * * * ** **
229202 AAATGGACTTTTGTTATCCAATGGATGGCCTTCGCTACATATTT-TCCAAAACAAACATCCAATT
257 AAATGGACTTTTCTTGT-CAATGGATGGCTTTCGCTTCACGTTTCT-CAAGTCAAACATCCAATT
*
229266 ATGATATGTTTTAGCT-AAAAAT
320 ATGATCTGTTTTA--TAAAAAAT
* * * * ** *
229288 -AAAAGAGAAATTCAA-TCTAAAATCATTTACAAGATTATAAAATCGTTGAAAGCAAGTAACTAG
1 GAAAA-A-AAATTCAACT-TAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAG
** ** ** * * * * *
229351 GCTTTCAAAGGCGT-AAGTGACTATAATTAGATTTTTCTTGTCAATGGATGGCTTTCACTTCATG
63 TATTTTGAAGGTATGAA-TGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCACG
* * * * *
229415 TTTC-CTAAGGCAAACATCCAATTATGATCTGTTTTGACCAAAAATGAAAAAAATAATTTAA-TT
127 TTTCTC-GAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATG-AAAAAA-AATTCAACTT
* * *
229478 GAAAATCATTTATTAGATTATAAAACCATATAAACGCAAGTAACTAG-ACTTTCGAAGGTATGAG
189 -AAAATCATTTATAAGATTATAAAACCAT-TAAA-GCGAGTAACTAGTA-TTTCGAAGGCATGAG
* * * * * * * **
229542 TGACTATAAATAGACTTTCCTTATCAATGGAAGGCTTTCGCTTCATGTTTCACGGAGGAAAACAT
250 TGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTC-AAGTCAAACAT
* *
229607 CCAATTATGATATGTTTTAATGAAAAAT
314 CCAATTATGATCTGTTTT-ATAAAAAAT
* * *
229635 GAAAAAAAATTCAACTTAAAATAATTTATAAGATTATAAAACC-TTTGAAAGTGAGCAATTAGTC
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTT-AAAGTGAGTAATTAGTA
** ** * * * * ** * *
229699 TTTCAAAGGTATGCGTGGCTATAAGTGGACTATTCTTGTCAATGGATGGCTTTTGCTTAACATTT
65 TTTTGAAGGTATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCACGTTT
* * * * * *
229764 GTCGAGGCAAACATTCACTTATGATCCGTTTTAA-TAAAAAATGAAGAAAAATTCAACTTAAAAT
130 CTCGAGACAAACATCCAATTATGATCTGTTTTAACT-AAAAATGAAAAAAAATTCAACTTAAAAT
* * * * ** ** *
229828 CATTTAGAAGATTATAAAATCATTTAAAGTGAGTAACTAGTACTTCGAAGGCAAAAACGGCTATA
194 CATTTATAAGATTATAAAACCA-TTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATA
* * * **
229893 AATGGACTTTTCATGTCAACGGATGGCTTTTGCTTCTTGTTTCGT-AAGGTACAAGGTAAACATC
258 AATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-TCAA-GT-C-----AAACATC
* * *
229957 CAAATATAATAT-TTTTA-ACAAACAAT
315 CAATTATGATCTGTTTTATA-AAA-AAT
* * * * *
229983 --AAAAAAATTTAACTTAAAATCATTTACACGATTACAAAACCATTTAAA-TCGAGTAACTAGTA
1 GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT-GAGTAATTAGTA
* * * * * * ** *
230045 TTTCGAAGGTATGAGTGACTATGAATGGACTTAT-TGAGTCAATGGATTGCTTTTGCTTCATGTT
65 TTTTGAAGGTATGAATGACTATAAATGGACTTTTCTTA-TCAATGGATGGCTTTCACTTCACGTT
*
230109 TCTCAAGGA-AAACATCCAATTATGATCTGTTTTAACTAAAAAT-AAAAAAAA-TCAACTTAAAA
129 TCTCGA-GACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAACTTAAAA
* * * * ** * * *
230171 TCATTTATAGGATTGT-AAATCATTCAAAGCAAGTAACTAGCCTTTCAAAGGTATAAGTGACTAT
193 TCATTTATAAGATTATAAAACCATT-AAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTAT
* * * * * ** *
230235 AAATGGAGTTTTCTTGTCAACGCATGGCTTTCACTTCATGTTT-TTGAGAT-GAACATCCAATTA
257 AAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAG-TCAAACATCCAATTA
* * * *
230298 TAATTTTTTTTAGCTAAAAATT
321 TGATCTGTTTTA--TAAAAAAT
* * * * * *
230320 TAAAAAAAGGTTCAACATATAATAATTTATAAGATTATAAAACTATTTAAAGTGAGTAATTAGT-
1 GAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTA
* * * * * * *
230384 TTGTTGAAAGCT-TGAATAATTGTAAATGGTCTTTTCTTTTCGAAT-GATGGCTTTTGA-TTCAC
65 TT-TTG-AAGGTATGAATGACTATAAATGGACTTTTCTTATC-AATGGATGGC-TTTCACTTCAC
* * *
230446 CTTTC-CTGA-AGCAAACATCCAATTATGATCTATTTTAACTAAAAATGAAAAAAAATT-AATTT
126 GTTTCTC-GAGA-CAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAACTT
* * * *
230508 AAAATCATTTATAAGATTATAAAACCATTGAAAGCAAGTAACTAGTATTTTGAAAGCTTGAGTGA
189 AAAATCATTTATAAGATTATAAAACCATT-AAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGA
* * * * * **
230573 CTATAAATGTACTTTTCTTGTCCATGGATAGCTTTCGCTTCACATTTCCCAAGGT-AAACATTGA
253 CTATAAATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAA-GTCAAACATCCA
*
230637 ATTATGATCTGTTTTATAAAATAT
317 ATTATGATCTGTTTTATAAAAAAT
* ** * * * *
230661 GAAAAAAAAATTCAACTTAAAATAATTTATAAGATTACGAAACTATTGAAAGTGAGTAACTAGTC
1 G-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTA
* ** * * * * ** ** **
230726 CTTCAAAGGCATGAGT-AGCTAAAAATGGACTTTTCTTGTCAAAAGATTACTTTTGCTTCACAG-
65 TTTTGAAGGTATGAATGA-CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAC-GT
* * * * *
230789 TTCCCAAGGA-AAACATCCAATTATGATATGTTTTAA-TAGCAAATGAAAAAAAATTCAAGTTAA
128 TTCTCGA-GACAAACATCCAATTATGATCTGTTTTAACTA-AAAATGAAAAAAAATTCAACTTAA
230852 AATCATTTA
191 AATCATTTA
230861 AAGCTAGTAA
Statistics
Matches: 2591, Mismatches: 528, Indels: 316
0.75 0.15 0.09
Matches are distributed among these distances:
331 1 0.00
332 47 0.02
333 68 0.03
334 17 0.01
335 25 0.01
336 14 0.01
337 109 0.04
338 10 0.00
339 13 0.01
340 255 0.10
341 362 0.14
342 567 0.22
343 390 0.15
344 143 0.06
345 161 0.06
346 294 0.11
347 86 0.03
348 12 0.00
349 17 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (340 bp):
GAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAATTAGTAT
TTTGAAGGTATGAATGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCACGTTTC
TCGAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATGAAAAAAAATTCAACTTAAAATCA
TTTATAAGATTATAAAACCATTAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAAT
GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGTCAAACATCCAATTATGATC
TGTTTTATAAAAAAT
Found at i:229797 original size:171 final size:169
Alignment explanation
Indices: 227216--230860 Score: 2455
Period size: 172 Copynumber: 21.3 Consensus size: 169
227206 GTAGATGTCT
* * * * * *
227216 AATTATGATTTGTTTGAATGAAAGACGAAAAAAAATTCAACTTTAGATCATTTATAAGATTATAA
1 AATTATGATCTGTTTTAAT-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * *
227281 AACCATTTAAAGTAAGTAACTTA-TCTTTCAAGGGCATGAATGACTATAAA-GAGACTTTTCTTA
65 AACC-TTTAAAGTGAGTAAC-TAGTCTTTCAAAGGTATGAGTGACTATAAATG-GACTTTTCTTG
* * * ** ** *
227344 TTAATAGATGGGTTTTAG-TTCATGTTTCTTGAGGCAAAAATCC
127 TCAATGGATGGCTTTT-GCTTCACATTTCTCAAGGCAAACATCC
* * * * * * * *
227387 AATGATGATTTGTTTTAAACAAAAATGAAAAAAAAATTCAACTTAAAATCGTCTACAAGATTCTG
1 AATTATGATCTGTTTT-AATAAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
** * * * * * ** * *
227452 AAACCATTTAAAGCAACTAAC-AATCCATTCCAAGGCACAATTGACTATAAATAGACTTTTCTTG
64 AAACC-TTTAAAGTGAGTAACTAGT-CTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTG
* * * * * ** *
227516 TTAATTGATGGCTTTCGTTTCACGTTTCTTGAGGC-AACATCT
127 TCAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * * *
227558 AATTATGATATGTTTTAACAGAAAATTAAAAAAAATTCAATTTAAAATCATTTATAAGATTATAA
1 AATTATGATCTGTTTTAATA-AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * ** * * * * *
227623 AACCATTTAAAGTGAGAAAGTAATATTTTGAAGGTACGAGTGACTATAAATAGATTTTTTTTTAT
65 AACC-TTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGA-CTTTTCTTGT
** * * *
227688 CAATGGATGGCTTTCACTTCACGTTTCTCGAGACAAACATCC
128 CAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * * * * *
227730 AATGATGATTTGCTTTAACCAAAAATGAAAGAAAATTCAACTTAAAATCATTTATGAGATTATAA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * * * * *
227795 AATCATTCAAAGTGACTAACTAGTATTTCGAAGGCATGAGTGACTATAAATAGATTTTTTCTTGT
65 AA-CCTTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGA-CTTTTCTTGT
* * ** * *
227860 CAAAGGAT-GATTATTGCTTCATGTTTCTCAAGTCAAGCATCC
128 CAATGGATGGCTT-TTGCTTCACATTTCTCAAGGCAAACATCC
* * * * * *
227902 AATTATTATCTATTTTAA-AAATATG-AAAAAAATT-AACCTGAAAATCATTTATAAAATTACAA
1 AATTATGATCTGTTTTAATAAAAATGAAAAAAAATTCAA-CTTAAAATCATTTATAAGATTATAA
** * * * * * *
227964 AACCATTTAAAACGAGTAATTAGGCTTTCAAAGGCATGAATGACTATAAATAGACTTTTCCTGTC
65 AACC-TTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTC
* * * * * * *
228029 AATTGATGGCTTTCGCTTCACGTTT-TCCCATGTAAACATCA
129 AATGGATGGCTTTTGCTTCACATTTCT-CAAGGCAAACATCC
* * * *
228070 AATTATGA-----TTTAA-AAACAATGAAAAAAGA-TCAATTTAAAATCATTTTTAA-AGTAATA
1 AATTATGATCTGTTTTAATAAA-AATGAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATA
** * * * * *
228127 AAATCAATTAAAGTGAATACACAAG-CTTTCAAAGGCATTAGTGACTATAAATGGACTTTTTTTG
64 AAA-CCTTTAAAGTGAGTA-ACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTG
* * * * * ** * *
228191 TAAATGTATAGCTTTTGATAT-ACGTTTCTTGATGCAAACATCT
127 TCAATGGATGGCTTTTGCT-TCACATTTCTCAAGGCAAACATCC
* * * * *
228234 AATTATAATCTGTTTTAATTAAGAATTTAAAAAAAGGTTCAACGTAAAATCATTTATAAGATTAT
1 AATTATGATCTGTTTTAA-TAA-AAATGAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTAT
* ** * ** * * * *
228299 AAAACCATTTAAAGTGAGTAATTAGT-TTGTTGAAGGCACAAATGATTGTAAATGGACTGTTCTT
63 AAAACC-TTTAAAGTGAGTAACTAGTCTT-TCAAAGGTATGAGTGACTATAAATGGACTTTTCTT
* * * * *
228363 TTCAATTGATGGCTTTTGATTCACCTTTCTCAAGACAAACATCC
126 GTCAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * *
228407 AATTATGATCTATTTTGACTAAAAGTGAAAAAAAAATTCTAA-TTAAAATCATTTATAAGATTAT
1 AATTATGATCTGTTTT-AATAAAAATG-AAAAAAAATTC-AACTTAAAATCATTTATAAGATTAT
* * *
228471 AAAACCATTGAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAACGAACTTTTCTTG
63 AAAACC-TTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTG
* * * ** *
228536 TCCATGGATGACTTTTGCTTCACGTTTCTTGAGGCAAACATCG
127 TCAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * * * * * *
228579 AACTGTAATCTATTTT-ATGAAAAAATGAAAAGAAA-TCAACTTAAGATAATTTATAAGATTATA
1 AATTATGATCTGTTTTAAT--AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* * * * * *
228642 AAA-CTATTGAAAATGATTAACTAGACCTTCAAA-GTCATGAAT-AGCTACAAATGGACTTTTCT
64 AAACCT-TT-AAAGTGAGTAACTAGTCTTTCAAAGGT-ATGAGTGA-CTATAAATGGACTTTTCT
**
228704 TGTCAATGGATGGC-TTTGCTTCACATTGTCT-TTGGCAAACATCC
125 TGTCAATGGATGGCTTTTGCTTCACATT-TCTCAAGGCAAACATCC
* * *
228748 AATTATGATCTATTTTAACTAAAAATGAAAAAACAA-TCAACTTAAAATCATTTACATGATTATA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAAA-AATTCAACTTAAAATCATTTATAAGATTATA
* * ** * * *
228812 AAACCACTTAAAGCGAGTAACTAG-CATTTTGAAGGCATGAGTGGCTGTATAAATGGACTTTCCT
64 AAACC-TTTAAAGTGAGTAACTAGTC-TTTCAAAGGTATGAGTGAC--TATAAATGGACTTTTCT
* ** *
228876 TGTCAATGGATGGCTCTCACTTCACATTTC-CTAAGGTAAACATCC
125 TGTCAATGGATGGCTTTTGCTTCACATTTCTC-AAGGCAAACATCC
* *
228921 AATTATGATCTGTTTTAACAAAAAATGAAAAAAAATTCAACTTAAAATCATTTACAAGATTATAA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * ** * * * *
228986 AACCATTTAAA-TCAAGTAATTAGTATTTTGAAGGCATGAGTTACTACAAATGGACTTCTT-TAG
65 AACC-TTTAAAGT-GAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTT-TTCTTG
* ** * ** * **
229049 TCAATGAATGG-TTTT-CATTTCATGTTTCTCGAGATAAATATTT
127 TCAATGGATGGCTTTTGC--TTCACATTTCTCAAGGCAAACATCC
* *
229092 AATTATGATCTG-TTTAACTAAAAAT-AAAAAGAAATTTAACTTAAAATCATTTATAAGATCATA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAA-AAATTCAACTTAAAATCATTTATAAGATTATA
* * * * * * * * * *
229155 AATCATTCAAAGCGAGTACCTCG-CATCTCAAAGGCATGAGTGACTATAAATGGACTTTTGTTAT
64 AAACCTTTAAAGTGAGTAACTAGTC-TTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGT
* * * * **
229219 CCAATGGATGGCCTTCGCTACATATTT-TCCAAAACAAACATCC
128 -CAATGGATGGCTTTTGCTTCACATTTCT-CAAGGCAAACATCC
* * *
229262 AATTATGATATGTTTTAGCTAAAAAT-AAAAGAGAAATTCAA-TCTAAAATCATTTACAAGATTA
1 AATTATGATCTGTTTTA-ATAAAAATGAAAA-A-AAATTCAACT-TAAAATCATTTATAAGATTA
* * ** * ** * * * *
229325 TAAAATCGTTGAAAGCAAGTAACTAGGCTTTCAAAGGCGTAAGTGACTATAATTAGATTTTTCTT
62 TAAAA-CCTTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTT
** **
229390 GTCAATGGATGGCTTTCACTTCATGTTTC-CTAAGGCAAACATCC
126 GTCAATGGATGGCTTTTGCTTCACATTTCTC-AAGGCAAACATCC
** * *
229434 AATTATGATCTGTTTTGACCAAAAATGAAAAAAATAATTTAA-TTGAAAATCATTTATTAGATTA
1 AATTATGATCTGTTTT-AATAAAAATG-AAAAAA-AATTCAACTT-AAAATCATTTATAAGATTA
* ** * * * *
229498 TAAAACCATATAAACGCAAGTAACTAGACTTTCGAAGGTATGAGTGACTATAAATAGACTTTCCT
62 TAAAACC-TTTAAA-GTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCT
* * * ** * * *
229563 TATCAATGGAAGGCTTTCGCTTCATGTTTCACGGAGGAAAACATCC
125 TGTCAATGGATGGCTTTTGCTTCACATTTCTC-AAGGCAAACATCC
* *
229609 AATTATGATATGTTTTAATGAAAAATGAAAAAAAATTCAACTTAAAATAATTTATAAGATTATAA
1 AATTATGATCTGTTTTAAT-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * * * *
229674 AACCTTTGAAAGTGAGCAATTAGTCTTTCAAAGGTATGCGTGGCTATAAGTGGACTATTCTTGTC
65 AACCTTT-AAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTC
* * * *
229739 AATGGATGGCTTTTGCTTAACATTTGTCGAGGCAAACATTC
129 AATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * * *
229780 ACTTATGATCCGTTTTAATAAAAAATGAAGAAAAATTCAACTTAAAATCATTTAGAAGATTATAA
1 AATTATGATCTGTTTTAAT-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * ** ** * *
229845 AATCATTTAAAGTGAGTAACTAGTAC-TTCGAAGGCAAAAACGGCTATAAATGGACTTTTCATGT
65 AA-CCTTTAAAGTGAGTAACTAGT-CTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGT
* *** *
229909 CAACGGATGGCTTTTGCTTCTTGTTTCGTAAGGTACAAGGTAAACATCC
128 CAATGGATGGCTTTTGCTTCACATTTC------T-CAAGGCAAACATCC
* * * * * * * *
229958 AAATATAATAT-TTTTAACAAACAAT--AAAAAAATTTAACTTAAAATCATTTACACGATTACAA
1 AATTATGATCTGTTTTAATAAA-AATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * **
230020 AACCATTTAAA-TCGAGTAACTAGTATTTCGAAGGTATGAGTGACTATGAATGGACTTATT-GAG
65 AACC-TTTAAAGT-GAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTT-TTCTTG
* ** *
230083 TCAATGGATTGCTTTTGCTTCATGTTTCTCAAGGAAAACATCC
127 TCAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* *
230126 AATTATGATCTGTTTTAACTAAAAAT-AAAAAAAA-TCAACTTAAAATCATTTATAGGATTGTAA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* * * ** * * *
230189 ATCATTCAAAGCAAGTAACTAGCCTTTCAAAGGTATAAGTGACTATAAATGGAGTTTTCTTGTCA
65 AACCTTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCA
* * ** ** * * *
230254 ACGCATGGCTTTCACTTCATGTTTTTGAGATG--AACATCC
130 ATGGATGGCTTTTGCTTCACATTTCTCA-AGGCAAACATCC
* * * * * * * * *
230293 AATTATAATTTTTTTTAGCTAAAAATTTAAAAAAAGGTTCAACATATAATAATTTATAAGATTAT
1 AATTATGATCTGTTTTA-ATAAAAA-TGAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTAT
* * * * * * * * * *
230358 AAAACTATTTAAAGTGAGTAATTAGTTTGTTGAAAGCT-TGAATAATTGTAAATGGTCTTTTCTT
63 AAAAC-CTTTAAAGTGAGTAACTAGTCT-TTCAAAGGTATGAGTGACTATAAATGGACTTTTCTT
* * * *
230422 TTCGAAT-GATGGCTTTTGATTCACCTTTCCTGAA-GCAAACATCC
126 GTC-AATGGATGGCTTTTGCTTCACATTT-CTCAAGGCAAACATCC
* *
230466 AATTATGATCTATTTTAACTAAAAATGAAAAAAAATT-AATTTAAAATCATTTATAAGATTATAA
1 AATTATGATCTGTTTTAA-TAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
* ** * * * *
230530 AACCATTGAAAGCAAGTAACTAGTATTTTGAAAGCT-TGAGTGACTATAAATGTACTTTTCTTGT
65 AACC-TTTAAAGTGAGTAACTAGT-CTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGT
* * * * * **
230594 CCATGGATAGCTTTCGCTTCACATTTCCCAAGGTAAACATTG
128 CAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* **
230636 AATTATGATCTGTTTT-ATAAAATATGAAAAAAAAATTCAACTTAAAATAATTTATAAGATTACG
1 AATTATGATCTGTTTTAATAAAA-ATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATA
* * *
230700 AAA-CTATTGAAAGTGAGTAACTAGTCCTTCAAAGGCATGAGT-AGCTAAAAATGGACTTTTCTT
64 AAACCT-TT-AAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGA-CTATAAATGGACTTTTCTT
** ** * * *
230763 GTCAAAAGATTACTTTTGCTTCACAGTTCCCAAGGAAAACATCC
126 GTCAATGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
* * *
230807 AATTATGATATGTTTTAATAGCAAATGAAAAAAAATTCAAGTTAAAATCATTTA
1 AATTATGATCTGTTTTAATA-AAAATGAAAAAAAATTCAACTTAAAATCATTTA
230861 AAGCTAGTAA
Statistics
Matches: 2757, Mismatches: 573, Indels: 288
0.76 0.16 0.08
Matches are distributed among these distances:
163 9 0.00
164 103 0.04
165 14 0.01
167 30 0.01
168 140 0.05
169 236 0.09
170 436 0.16
171 479 0.17
172 663 0.24
173 393 0.14
174 87 0.03
175 135 0.05
176 5 0.00
177 10 0.00
178 17 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (169 bp):
AATTATGATCTGTTTTAATAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAA
ACCTTTAAAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGACTATAAATGGACTTTTCTTGTCAA
TGGATGGCTTTTGCTTCACATTTCTCAAGGCAAACATCC
Found at i:235192 original size:171 final size:171
Alignment explanation
Indices: 234892--243987 Score: 5140
Period size: 170 Copynumber: 53.4 Consensus size: 171
234882 CAACATCTTA
* * * * *
234892 TGCTTCATGTTT-TCCAAGATAAACATCCAATTATGATATGTTTT-AGCCAAAAATGAAAAGAAA
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGA-CCAAAAATGAAAAAAAA
* * * * * * *
234955 TTGAACTTAAAATTATTTATAAGATTATAAAAACATTAAAAGTGAA-TAATTAAG-CTTTCGAAG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAG-CAAGTAACT-AGTATTTCGAAG
* * * * * *
235018 GCATAAGTGACTGTAAATGCAATTTTATTGTCAATGGATGGCTTT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* ** * * *
235063 TGCTTCATGTTTCTCGAGGCAGCCATCCAACTATAATCTGTTTTGACCGAAAATGAAAAACAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * *
235128 CAACTTATAAA-CATTTAAAAGATTATAAAATTATTTAAAGCAAGTAACTAGTATTTCTAAGGCA
66 CAACTTA-AAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * * *
235192 TGAGTGGCTATAAATGGACTTTTTTTATCAACAGATAGCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * *
235234 TGCTTC-TCATTTC-CTAAGGTAAATATCCAATTATAATCTGTTTTGA-CAAACAATGAAAAAAA
1 TGCTTCAT-GTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAA-AATGAAAAAAA
* * *
235296 ATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAATCAAGTAACTAGTATTTCGAAGG
63 ATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * * * *
235361 CATGAGTAACTTTAAATGGACTTCTCTAGCCAATAGATGGC-TT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * *
235404 TACTTCATG-TTCTTGAGGAAAACATCCAATTATAATATGTTTT-AGCCAAAAAT-AAGAAAAAA
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGA-CCAAAAATGAA-AAAAAA
* * * * ** * * *
235466 TTCAACTTAAAATCATTTATAAGGTTAT-AAATCATTCAAAGCGAGTATCTAGCCTTTCAAATGA
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGC
* *
235530 ATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * *
235573 TGCTTCATGTTTCTC-AAGATGAACATCCAATTATGATCTATTTT-AGCTAAAAATTTTAAAAAA
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGA-CCAAAAA--TGAAAAAA
** * * * ** * * *
235636 GGTTCAACATAAAATAATTTATAAG-TTATAAAA-CTATTGAAAGTGAGCAATTAGT-TTGTTGA
62 AATTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATT-TCGA
* * * * * * *
235698 AGACATGAATGATTGTAAATGGACTTTTCTTATC-ATCTGATGGGTTT
125 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAAT-AGATGGCTTT
* * ** * * * * *
235745 TGATTTACCTTTC-CAAAGGTAAACATCCAATTATGATATATTTTGACCAAAAATG-AAAAAAAT
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * * * * **
235808 TCAACCTAAAATTATTTATAAGATTATAAAACCATTGAAAGCAAGTAAGTAGTCTGTTTAAAGGC
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTAT-TTCGAAGGC
* * * * * * *
235873 ATGAGTGACTGT-AATAGACTTTTCTTATCCATGGACGTCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * *
235915 CGCTTCATGTTTC-CTAAGGAAAACATCCAATTATAGTCTGTTTT-ATCAAAAAATGAAAAAAAA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGA-CCAAAAATG-AAAAAAA
* * * ** * ** * ** *
235978 ATTCAACTTAAAATAATTTATAATATTATGAACCCATTAAAAGTGAGTAACAAGTCCTTCAAAGG
63 ATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * * *
236043 CATCAGT-AGCTACAAATGGACTTTTCCTATCAATAGAT-GCTTT
128 CATGAGTGA-CTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** ** * ** * * * *
236086 TAATTCACATTTCTCAAGGTCAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * ** * *
236151 CATCTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTATTTTGAACGCAT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
* * *
236216 GAGTGGCTATATGAATGGACTTTTCTTATTAATAGATGGCTTT
131 GAGTGACTATA--AATGGACTTTTCTTGTCAATAGATGGCTTT
** ** * * ** * * *
236259 CACTTCACATTTC-CTAAGGTAAGTATCCAATTATGATCTGTTTTAACAAAAAATGAACAGAAAA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAA-A-AAAA
* * * * * * *
236323 AGTTCAACTTAAATTTATTTACAAGATTATAAAACCCTTTAAATCGAGTAACTAGTATTTC-AAG
63 A-TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAA-
* **
236387 GGGATGAGTGACTATAAATGGACTTCTT-TTGTCAAGGGATGGCTTT
126 GGCATGAGTGACTATAAATGGACTT-TTCTTGTCAATAGATGGCTTT
** * ** * * * * * *
236433 CACTTCATTTTTCTTAAGGCAAACATCCACTTATGATATTTTTTAACCAAAAAT-AAAAAAAA-T
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * **
236496 CAACTTAAAATTATTTATAAGACTT-T-AAATCATTCAAAGCAAGTAATTAGCCTTTCGAAGGCA
66 CAACTTAAAATCATTTATAAGA-TTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * *
236559 TG-GATGACTATAAATGGACTTTTCTTGTCATTAGATGTCATT
130 TGAG-TGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * ** * ** * **
236601 CGATTCACATTTC-CTGAGGCAAACATCCAATTACGATCTATTTT-AATAACAAATG-AAAAAAA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAA-AAATGAAAAAAAA
*** * *
236663 TTCAACTTAAAATCATTTATAAGATTATAAAA-CTATTTAAAATGACTAACTAGTATTTCAAAGG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * ***
236727 CATGAGTGACTATAAATAGAATTTTCTTGTCAAT-GAATATTTTT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAG-ATGGCTTT
* ** * * * *
236771 TGCTTCACATG-TTCT-GATGTGAACATCCAATTATGATCTATTTTAACAAAAAAT-AAAAAAAA
1 TGCTT--CATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAA
* ** * * * ** *
236833 TTTAACTTAAAATCATTTATAAGATTATAAAA-CTATTTGTACCGAGTAATTAGGCTTTCAAAGG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * ** * *
236897 CATGAATGGCTATCTATGGACTTTTCTTGTCCATTA-ATGGCTCT
128 CATGAGTGACTATAAATGGACTTTTCTTGT-CAATAGATGGCTTT
* * * * * * * * ** *
236941 CGCTTTACGTTT-T-TAGTGTAAACATCAAATTATGATCTATGCGTAACAAACAAAAA-GAAAAA
1 TGCTTCATGTTTCTCGAG-GAAAACATCCAATTATAATCTGT-TTTGAC---CAAAAATGAAAAA
* * * * * ** ** *
237003 AAGTT-AATTTAAAATTATTTTTAA-AGTTATAAAATCACTTAAAGGGAGTAACTAGGCTTTCAA
61 AAATTCAACTTAAAATCATTTATAAGA-TTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGA
* * * *
237066 AAG-ATGAGTGACTATAAATGGACTTCTCTAGTCAATGGATGGCTTT
125 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* ** * * * * * ** *
237112 TGCTTCATATTTCTTAAAGAAAACATCCAATTCTGATATGTTTTAATGAAAAATGGAAAAAAA--
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * * * * * *
237175 -AATTTAAAATCATTTATAAGATTATAAAACCATATAAAGTAAATACCTTGTCTTTC-AAGGGCA
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAA-GGCA
* *
237238 TGAGTGATTATAAATGGACTTTTCTTGTCAATGGATGGCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * * * * * * *
237280 TGATTCATGTTTTTTGAGAAAAAAATCCACTAATGATTTATTTTAACTAAAAATGAAAAAACAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAA-AA-
* * * * * * *
237345 TTCCATTTAGAATCATTTACAAGATTATAAAATCATTTAAAGCAAGTAA-TAAGCCATTT-TAGG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACT-AG-TATTTCGAAG
* * * * * *
237408 GCATAAGTGACTATAAAGGGACTTTTCTTGCCAATGGTTGGCTCT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * ** * * * * * * *
237453 CGTTTCATGTTTTTTAAGGCAAATATCCAATTATGATATGTTTTAACTGAAAAA-GAAAAGAAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGAC-CAAAAATGAAAAAAAAT
* * ** *
237517 TCAACTTAAAATCACTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTATTTCAAAGGCA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * * * *
237582 TAAGTGGCTATAGATGAACTTTTCTTGTCAATGGATGGCATT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** * * * * *
237624 CACTTCATGCTTTCT-AAGGCAAATATCCAATTATAATTTG-TTTGAACTAAAAATGAAAAAAAA
1 TGCTTCATG-TTTCTCGAGGAAAACATCCAATTATAATCTGTTTTG-ACCAAAAATGAAAAAAAA
* * * * *
237687 -T-AACTTAAAATCATTTATAAGATTTTAAAACCATTTAAGGC-AGTTAACTAGCATTTGGAAGG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAG-TAACTAGTATTTCGAAGG
* ** * * **
237749 CATGAATGACCCTAAATTGACTTTTCTTGTCAATGGATGATTTT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * ** * * * * * *
237793 TCCTTCACGTCTCTTAAGGTAAACATCCAATTATCATTTATTTTAACAAAAAAT-AAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * ** * * *
237857 CAAGTTAAAATCATTTATAAGATTATAAAA-CTATTTGAAGTGAGTAATTAAG-CTTTCAAAGGC
66 CAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACT-AGTATTTCGAAGGC
* * * * ** *
237920 ATGAATTACTATAGATGGACTTTTCTTATCAATTCATAGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* ** * * * * * * * * *
237963 CGCTTAACAT-TTT-TTTAGGTAAGCATCAAATTA-GATTTATGTGTAACAAAAAAT-ACAAAAA
1 TGCTT--CATGTTTCTCGAGGAAAACATCCAATTATAATCTGT-TTTGACCAAAAATGA-AAAAA
* * * * ** * ** *
238024 AAGTCAATTTAAAATCATTTTTAA-AGTTATAAAATCACTTAAAGTGAGGAACTAGGCTTTCAAA
62 AATTCAACTTAAAATCATTTATAAGA-TTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAA
* * * *
238088 GG-ATGAGTTACTATAAATGGACTTCTCTAGTCAATGGATGGCTTT
126 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * * * ** * ** *
238133 TCCCTCATGTGTCCCAAGGTAAATATCCAATTATGATCAATTTTAATGAAAAGTGAAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* ** * *
238198 CAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAATAAGTAACTTGTCTTTC-AAGGGCA
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAA-GGCA
* * * * *
238262 TAAGTGACCATAAATGGAC-TTTCTTGTTAATGGATGGCTCT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * ** * * ** * * * * * *
238303 CGGTTCACATTTTTTGAGGCCACCATCCAATGATAATTTGTTTTAATCAAAACTGAAAAAAAAAA
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATG--AAAAAAAA
* * * * * * * * * *
238368 TTCAACTTAGAATCATTTACAAGATTCTAAAACCCTTTGAAGCGAGTAACAAGCCA-TTCCAAGG
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAG-TATTTCGAAGG
* ** * * * * * *
238432 TATGAGCAACTACAAATGAACTTTTGTTGTCAATGGGTAGCTTT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * *
238476 TGTTTCATGTTTTTCGAGGTAAACATCCAATTATGATATGTTTTAACCAAAGAA-GAAAAGAAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAA-AATGAAAAAAAAT
* * * * * * * * * *
238540 TCAACTTAACATCATCTATAAGATTATAAAACCATATAAGGCGAGTAATTTGTCTTTCGAGGGCA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * ** *
238605 TGAATGACTATAAATGGACTTTTTTTTGTTGATGGATGGCTTT
130 TGAGTGACTATAAATGGAC-TTTTCTTGTCAATAGATGGCTTT
* * * * * * *
238648 CGCTTCACGTTTCT-TATGGAAAACATCCAATGATGA-CTTGTTTTAACTAAAAATGAAAAAAAA
1 TGCTTCATGTTTCTCGA-GGAAAACATCCAATTATAATC-TGTTTTGACCAAAAATGAAAAAAAA
* * * * ** * * *
238711 TTCAACTTAAAGTCATTTACATGATTCTAAAA-CAATTTAAAAG-GGGTAACAAGCCA-TTCCAA
64 TTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTT-AAAGCAAGTAACTAG-TATTTCGAA
* * ** * *
238773 GTCATGA-TGACTGTAAATACACTTTTCTTGTCAATGGATTGCTTT
126 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * ** * * * * *
238818 CGCTTTACGTTTC-CCAAAACAAACATTCAATTATTATTTCTTTTAACCAAAAAT--AAAAAAAT
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * * * ** * *
238880 TTAATTTAAAATTATTTATAAGATTTTAAAA-CATTGAAAGTGAGTAACTAGTCTTTCGAAGGTA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * * *
238944 TAAGCGACTATAAATGGACTTCTCTTGTTAATGGATGGCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * ** *
238986 TGCTTACAT-TTT-TTGAGGCAAAA-ATTCAATTATGATATCCTTTAACCAAAAATGAAAACAAA
1 TGCTT-CATGTTTCTCGAGG-AAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAA-AAA
* * * * * * * * *
239048 ATTCTACTTAAAATCATTTATAAGAATACAAAA-CAATTCAAACCGACTAACTAGTACTTCGAAT
63 ATTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGAAG
** * ** * *
239112 GTGTGAGCGACTATAAATGGACTTCGCTAGTCAATGGATGGCTTT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * *
239157 CG-TTCATGTTTCTTGAGGCAAAGATCCAATTATTATCTGTTTTAATCAAAAAT-AAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * * ** *
239220 CAACTTAAGATCATTTATAAGATTAT-AAATCATTCAAAGCGAGTAGCTAGCCTTTTGAAGGCAT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
*
239284 GAGTGACTATAAATGGA-TGTTTCTTGTCAATGGATGGCTTT
131 GAGTGACTATAAATGGACT-TTTCTTGTCAATAGATGGCTTT
* * * * * * *
239325 CGCTTCATGCTTT-TTGA-GATAAAAATTCAATTATAATATGTTTTAACCAAAAAAG-AAAAAAA
1 TGCTTCATG-TTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAA
* * * * * *
239387 TACATA-TTAAAATGATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTCGAAGA
64 TTCA-ACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * * * * * *
239451 TATGAGTGACTATAAATGAACTTCTCTAGTAAATGGATAGCTTT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** * * * * *
239495 CACTTCATGCTTT-TCGAGGCAAACAACCAATTATGATCTGTTTTAACCAATAAT-AAAAAAAAT
1 TGCTTCATG-TTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * ** ***
239558 TCAACTTAAAATCATTTATAAGAGTAT-AAATCATTCAAAGTGAGTAACTAACCTTTCGAAGGCA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * * * **
239622 TAATTGACTATGAATGGACTTTTCTTCTCACTAGATTTCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * *
239664 CGCTTCATGTTTC-CTGAGGCAAACATCCAATTATGATTTGTTTT-AACAACAAATGAAAAAAAA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAA-AAATG-AAAAAAA
* * * * * * *
239727 ATTCAACCTAAAAT-AGTTTATAAGATTATAAAATAATTTAAAGCGAGTAATTAGTCTTCCGAAA
63 ATTCAACTTAAAATCA-TTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAG
* * * * **
239791 GCATGAATGATTGTAAATGGACTTTTCTTGCCAATAGAT-ATTTT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * ** **
239835 TGATTCATCTTTCTCGAGAAAAACATCCAATTATGATTTGTTTTGATAAAAAAT-AAGAAGCAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAA-AAAAAAT
* * *** * **
239899 TCAACTTAAAATCATTTATAATATTATAAAA-CTATTGAAATTGAGCAACTAGGCTTTCGAAGGC
65 TCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGAAGGC
* * * *
239963 ATGAGTGAATATAAATAGACTTTTCCTGTCAATGGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** ** * * * *
240006 CACTTCACATTTCTC-ATGACAAACATCCAATTATGATCTGTTTT-AGTCAAAAAAGAAAAAAGA
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGA-CCAAAAATG-AAAAA-A
* * * *
240069 AGATTCAACTTAAAATCATTTATAAGAGTATAAAACCATTTAAAG-AGAGTAATTAGTCTTTCGA
62 A-ATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCA-AGTAACTAGTATTTCGA
* * * * * *
240133 AGGTATGAATGATTCTAAATGGACTTTTCTTGTCAATTGATAGCTTT
125 AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
*** ** * * * *
240180 CAATTCACCTTTC-CTGATGCAAA-ATCCAATTATGATCTCTTTTGACCAAAAATGAAAAAAAAA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATG-AAAAAAAA
* * * * * ** *
240243 TTAAACTTAAAATTC-TTTTTAAGATTTTAGAA-CATTAAAAGTGAGTAACTAGTCTTTCGAAGG
64 TTCAACTTAAAA-TCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * * * * * * * * *
240306 TATAAGCGACTACAAATGGACTTTTTTTATGAATGGGTAGCTTT
128 CATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * *
240350 TGCTTACAT-TGT-TCGAGGCAAAA-AACCAACTATGATATCTTTTAACCAAAAAT-AAAAAAAA
1 TGCTT-CATGTTTCTCGAGG-AAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAA
* * * * * * * * *
240411 ATCTACTTAAAATCATTTATAAGATTACAAAACCATTCAAAGCGACTAACTAGTATTTCAAACGC
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGC
** ** *
240476 ATGAGTGACTATAAATGGACTTCGCTAATCAATGGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * ** * *
240519 CG-TTCATGTTTCTTC-AGGCAAAGATCCAATTATTATCTGTTTCAATCAAAAATAAAAAAAAAT
1 TGCTTCATGTTTC-TCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * * * ** *
240582 TTAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGCGAGTAGCTAGCCTTTCGAAGGTA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * *
240646 TGAGTGACTATAAATGGACATTTT-TTGTTAATGGATGCCGTT
130 TGAGTGACTATAAATGGAC-TTTTCTTGTCAATAGATGGCTTT
* * * * * * *
240688 CGCTTCATACTTT-TTGA-GATAAAAATCTAATTATAATATGTTTT-----AACA--AAAAAAAA
1 TGCTTCAT-GTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAA
* * ** * * *
240744 TGCAGCTTAAAATCATTTATAAGATTATAAAGCCATTGAAAGCGAGTAACTAGTATTTCAAAGGC
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGC
* * * * *
240809 ATGAGTGACTATAAATAGACTTCTCTAGTAAATGGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** * ** * * * ** * * * *
240852 CACTTGATACTTCTCGATGTAAATATATAATTATGATTTGTTTTAACCAATAAT-AAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* ** ***
240916 CAACTTAAAATCATTTATAAGAGTAT-AAATCATTTAAAGTGAGTAACTAACCTTTCGAAGGCAT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
* * * * *
240980 GAGTGACTATGAATGGACTTTTGTTGTCACTGGATGACTTT
131 GAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * * *
241021 CGCTTCACGTTTCTTGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * * *
241086 CAACCTAAAATCATTTATAAGATTATAAAATAATTTAAAGCAAGTAATTGGTTTTTCGAAGGCAT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
* ** * * * * *
241151 GAATGTTTGTAAATGGACTTTTCTTGCCAATTGATAGTTTT
131 GAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** ** * ** * * *
241192 TTATTCACCTTTCTTGA-GACAAATTTCCAATTATGATCTGTTTTGATCAAAAATGAAAAACAAT
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * * * *
241256 TCAACTTAAAATTATTTATAATATTATAAAACCATTGAAAGCGAGTAACTAAG-CTTTCGAAGGC
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACT-AGTATTTCGAAGGC
* * * * * * * *
241320 ATTAGTGAATATAAATAGATTTTTCTTCTTAATGGATGGTTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* ** * * * *
241363 TACTTCACATTTCTC-AAGACAAA-ATCCAATTATGATCTATTTT-AGCCAAAAATAAAAAAAAG
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGA-CCAAAAATGAAAAAAA-
* * * * *** **
241425 ATTCAACTTTAAATCATTTATAAGAGTT-TAAAATCTTTTAAAGCGAGTAATTAACCTTTTAAAG
63 ATTCAACTTAAAATCATTTATAAGA-TTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAG
* * * * * * * * *
241489 GCATGAATGATTCTAAATAGACTTTTCTTTTGAATTGCTAGCTTT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
*** ** * * * * * * * *
241534 CAATTCACCTTTCCCAAGGCAGACATCCAATTATGATCAGTTTTGACAAAAAATAAAAATAAAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAA-AAAAT
* * * * ** *
241599 TCAACTTAAAATAATTTATAAGATTTTAAAA-CATTGAATGTGAGTAACTAG-ACTTTCAAAGGC
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTA-TTTCGAAGGC
* ** * * * * *
241662 ATAAACGACTGTAAACGGACTTCTCTTGTTAATGGATGG-TTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * * * *
241704 TCCCTT-ACGTTTTTCAAGGCAAAA-ATCCAATTATTATATCTTTTAACCAAAAATGAAAAACAA
1 T-GCTTCATGTTTCTCGAGG-AAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAA
* * * * ** * *
241767 TTCTACTTAAAATCATTTATAAGATTACAAAACCATTCAAAGTGACTAACTAGTATTTCGAACGC
64 TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGC
* ** ** *
241832 ATGGGTGACTATAAATGGACTTCACAAGTCAATGGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * ** * *
241875 CG-TTCATGTTTCTTGAGGCAAAGATCCAATTATTATCTGTTTTAATTAAAAGT-AAACAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * * * *
241938 CAACTTAAAATCATTTATAAGACTAT-AATTCATTCATAGCGAA-TAGCAAGGCT-TTTC-AAGG
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGC-AAGTAACTA-G-TATTTCGAAGG
* * * *
241999 CATGAGTGACTATAGATGGA-TATTTCTTATCAATGGATAGCTTT
128 CATGAGTGACTATAAATGGACT-TTTCTTGTCAATAGATGGCTTT
* * * * * * * *
242043 CGTTTCATGCTTT-TTGA-GATAAAAATCCAATTATAATGATTTTTTAACCAATAA-G-AAAAAA
1 TGCTTCATG-TTTCTCGAGGA-AAACATCCAATTATAAT-CTGTTTTGACCAAAAATGAAAAAAA
* * * * * * *
242104 ATAACAGCTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCGAGTAATTCGTATTTCGAAG
63 AT-TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAG
* ** * * *
242169 GCATGAGTGAGTATAAA-AAAATTTCTCTAGTCAATGGATGGCTTT
127 GCATGAGTGACTATAAATGGACTTT-TCTTGTCAATAGATGGCTTT
** * * * * * * *
242214 CACTTCATGCTTCTCGAGGCAAACACCCAATTATGATATGTTTTAACC---AATAAAAAAAAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * ** *
242276 CAACTTAAAATCATTTATAAGAGTAT-AAATCATTCAAAGCAAGTAACTAACATTTCGAAAGCAT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
* * *
242340 GAGTGACTATGAATGGACTTTTCTTGTCATTCGATGGCTTT
131 GAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * *
242381 TGCTTCATGTTTCTTGA-GTAAACATCCAATTATGATCTATTTT-AACAACAAGTGAAAAAAAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAA-AAATGAAAAAAAAT
* * * *
242444 TCAA-TCTAAAATCAGTTATAAGATTATAAAA-CAATTTAAAGCGAGTAATTAGTCTTTCGAAGG
65 TCAACT-TAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGAAGG
* * * * * * *
242507 CATGAATGATTGTAAATAGG-CTTTTCTTATCAATTGATTGTTTT
128 CATGAGTGACTATAAAT-GGACTTTTCTTGTCAATAGATGGCTTT
* ** * * * * ** *
242551 TGATTCACCTTTCTCGA-CACAAACATACAATTATGATCTATTTTGATTAAAAATGAAAAACAAT
1 TGCTTCATGTTTCTCGAGGA-AAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * ** * * * *
242615 TTAACTTAAAATCTTTTATAAG-CTATTAAAA-CATTGT-AAGTGAGTAATTAGTCTTTTGAAGC
65 TCAACTTAAAATCATTTATAAGATTA-TAAAATCATT-TAAAGCAAGTAACTAGTATTTCGAAGG
* *
242677 CATGAGT-AGCTCTAAATGGACTTTCCTTGTCAATAGATGGCTTT
128 CATGAGTGA-CTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
** * * * * * * * * * *
242721 CACTTCACGTTTC-CTAAGGCAAACATCTAA-TATGATCTGTATTAACTAAAAAT-AAAGAAAAG
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * ** * *
242783 T-AACTTAAAATCATTTATAAGACTAT-AAATCACTTAAAGCAAGTTACTAGCCTTTTGAAGACA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * * *
242846 TGAGTGACTGTAAATGGACTTTTTTTGTCACTAGATAG-TTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * *
242887 TCGCTGCATGTTTGCT--AAGACAAACATCCAATTATGATCTGTTTT-AGCTAAAAATGACAAAA
1 T-GCTTCATGTTT-CTCGAGGA-AAACATCCAATTATAATCTGTTTTGA-CCAAAAATGA-AAAA
*** *
242949 GGGTTCAACTTAAAATCATTTATAAGATTATAAAA-CTATTTAAAGCATGTAACTAGTATTTCGA
61 AAATTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCAAGTAACTAGTATTTCGA
* * *
243013 AGGTATGAGTGGCTATAAATGGACATTTT-TTGTCAATGGAT-GCTTT
125 AGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATAGATGGCTTT
** * * * * * * *
243059 TCGCTTCACATTTCTAGAGGTAAA-ATCCAATTATGATATGTTGTAACCAAAAATAAAAAAAAAT
1 T-GCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* * * * ** * * * *
243123 TCAACTTAAAATAATTTACAAGTTTATAAAACCATTTAAAGTGAGTTAGTCGTATTTTGAAGGCA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* * *
243188 TGAGTGACTATAAATGGACTTTTCTTATCAATGGATGCCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * ** * * *
243230 TACTTTAAGTTT-TCTAAGGTAAACATCCAATGAT-GGCTTGTTTT-AGCTAGAAATTAAAAACA
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATC-TGTTTTGA-CCAAAAATGAAAAA-A
* * * * * ** *
243292 AATTCAATTTAAAATTATTTTTAATATTATAAAACCATTTAAAGTGATTAACTAGTATTTCGAAG
62 AATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAG
* * * * *
243357 GCATGAGTGGCCATAAATGGGCTTTTCTTATCAATGGATGGCTTT
127 GCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * *** * * * * ** *
243402 CGCTTCATGTTTC-CTGAGGCAAAGATCTGTTTATAAACTATATTAATAAAAAATG-AAAAACA-
1 TGCTTCATGTTTCTC-GAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAAT
* ** * * * *
243464 TCATCCGAAAATCATGTATAAGATTATAAAACCATTTAAAATG-AA-TAATTAAGCT-TTT-GAC
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTT-AAA-GCAAGTAACT-AG-TATTTCGAA
* * * * * * *
243525 TGCATGAATGACTATAAATAGACTTTTCTTATTAATTGATAGCTTT
126 GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* * * * * * * * *
243571 CGCATGATGTTTCTAGAGGCAAACATCCAATTATGATATG-TTTCACTCAAAACTGAAAAAAAAT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGAC-CAAAAATGAAAAAAAAT
* * * * * * * *
243635 TCAACTTAAAATCGTTTAAAAGCTTATAAAACCATTTAAAGCGAGTAAGTAGTATTTCGAAAGTA
65 TCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCA
* *
243700 GGAGTGACTATAAATGGACTTTTCTTG-CAAATGGATGGCTTT
130 TGAGTGACTATAAATGGACTTTTCTTGTC-AATAGATGGCTTT
* ** * * * * * * * *
243742 CGCTTCACATTTCTCGAGGCAAACATCCAAATATGATATTTTTTAATCAAAAATGAAAACAAA-T
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
* * * * *
243806 CAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG-AGAATAACTTGTCTTTC-AAGGGT
66 CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCA-AGTAACTAGTATTTCGAA-GGC
* * * *
243869 ATGAGTCACTATAAATGAACTTTTTTTGTCAATCGATGGCTTT
129 ATGAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
* ** * * * * * * * * * * *
243912 TACTTCACATTTCTTGAAGCAAACATCCACTGATGATTTGTTTTAATCAAAATTGAAAAACAATT
1 TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
*
243977 AAACTTAAAAT
66 CAACTTAAAAT
243988 AGCCTACATG
Statistics
Matches: 7026, Mismatches: 1575, Indels: 648
0.76 0.17 0.07
Matches are distributed among these distances:
163 37 0.01
164 90 0.01
165 6 0.00
166 37 0.01
167 270 0.04
168 580 0.08
169 1068 0.15
170 1892 0.27
171 1660 0.24
172 818 0.12
173 309 0.04
174 182 0.03
175 13 0.00
176 64 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (171 bp):
TGCTTCATGTTTCTCGAGGAAAACATCCAATTATAATCTGTTTTGACCAAAAATGAAAAAAAATT
CAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCAAGTAACTAGTATTTCGAAGGCAT
GAGTGACTATAAATGGACTTTTCTTGTCAATAGATGGCTTT
Found at i:235942 original size:342 final size:336
Alignment explanation
Indices: 234912--243987 Score: 4159
Period size: 342 Copynumber: 26.7 Consensus size: 336
234902 TTTCCAAGAT
* * * * * *
234912 AAACATCCAATTATGATATGTTTTAGCCAAAAATG-AAAAGAAATTGAACTTAAAATTATTTATA
1 AAACATCCAATTATGATCTATTTTA-CAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * ** * * * *
234976 AGATTATAAAAACATTAAAAGTGAATAATTAAGCT-TTCGAAGGCATAAGTGACTGTAAATGCAA
65 AGATTATAAAACCATTAAAAGTGAGTAACT-AG-TATTTAAAGGCATGAGTGACTATAAATGGAC
* * * ** ** * * ** * * *
235040 TTTTATTGTCAATGGATGGCTTTTGCTTCATGTTTCTCGAGGCAGCCATCCAACTATAATCTGTT
128 TTTTCTTATC-ATAGATGG-TTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTT
* * * * ** *
235105 TTGACCGAAAATGAAAAACAATTCAACTTATAAA-CATTTAAAAGATTATAAAATTATTTAAAGC
190 TTAACCAAAAAT-AAAAAAAATTCAACTTA-AAATCATTTATAAGATTAT-AAACCATTCAAAGC
** * * * * *
235169 AAGTAACTAGTATTTCTAAGGCATGAGTGGCTATAAATGGACTTTTTTTATCAACAGATAGCTTT
252 AAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTT
* * *
235234 TGCTTCTCATTTCCTAAGGT
317 CGCTTCACATTTCCTAAGGA
* * * * * *
235254 AAATATCCAATTATAATCTGTTTTGACAAACAATG-AAAAAAAATTTAACTTAAAATCATTTATA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * *
235318 AGATTATAAAACCATTTAAA-TCAAGTAACTAGTATTTCGAAGGCATGAGTAACTTTAAATGGAC
65 AGATTATAAAACCATTAAAAGT-GAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGAC
* * * * ** * *
235382 TTCTC-TAGCCAATAGATGGCTTTACTT--CATGTTCTTGAGGAAAACATCCAATTATAATATGT
128 TTTTCTTA-TC-ATAGATGGTTTTAATTCACAT-TTC-CAAGGTAAACATCCAATTATGATATGT
* * * *
235444 TTTAGCCAAAAATAAGAAAAAATTCAACTTAAAATCATTTATAAGGTTATAAATCATTCAAAGCG
189 TTTAACCAAAAATAA-AAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCA
* * * * * * *
235509 AGTATCTAGCCTTTCAAATGAATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGGCTTTT
253 AGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTC
**
235574 GCTTCATGTTT-CTCAA-GA
318 GCTTCACATTTCCT-AAGGA
* * ** ** *
235592 TGAACATCCAATTATGATCTATTTTAGCTAAAAATTTTAAAAAAGGTTCAACATAAAATAATTTA
1 -AAACATCCAATTATGATCTATTTTA-C-AAAAAATGAAAAAAAAATTCAACTTAAAATAATTTA
* * * * * * * * * *
235657 TAAG-TTATAAAACTATTGAAAGTGAGCAATTAGTTTGTTGAAGACATGAATGATTGTAAATGGA
63 TAAGATTATAAAACCATTAAAAGTGAGTAACTAGTAT-TTAAAGGCATGAGTGACTATAAATGGA
* * * * *
235721 CTTTTCTTATCATCTGATGGGTTTTGATTTACCTTTCCAAAGGTAAACATCCAATTATGATATAT
127 CTTTTCTTATCAT-AGAT-GGTTTTAATTCACATTTCC-AAGGTAAACATCCAATTATGATATGT
* * * * *
235786 TTTGACCAAAAATGAAAAAAATTCAACCTAAAATTATTTATAAGATTATAAAACCATTGAAAGCA
189 TTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGCA
* * * * * * * * *
235851 AGTAAGTAGTCTGTTTAAAGGCATGAGTGACTGT-AATAGACTTTTCTTATCCATGGACGTCTTT
253 AGTAACTAGCCT-TTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTT
**
235915 CGCTTCATGTTTCCTAAGGA
317 CGCTTCACATTTCCTAAGGA
*
235935 AAACATCCAATTAT-AGTCTGTTTTATCAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTAT
1 AAACATCCAATTATGA-TCTATTTTA-CAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTAT
* * * * * * * *
235999 AATATTATGAACCCATTAAAAGTGAGTAACAAGTCCTTCAAAGGCATCAGT-AGCTACAAATGGA
64 AAGATTATAAAACCATTAAAAGTGAGTAACTAGT-ATTTAAAGGCATGAGTGA-CTATAAATGGA
* * * *
236063 CTTTTCCTATCAATAGATGCTTTTAATTCACATTTCTCAAGGTCAACATCCAATTATGATCTGTT
127 CTTTTCTTATC-ATAGATGGTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTT
* * * **
236128 TTAACAAAAAATAAAAAAAAATTCATCTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
190 TTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGCA
** ** * * *
236193 AGTAACTAGTATTTTGAACGCATGAGTGGCTATATGAATGGACTTTTCTTATTAATAGATGGCTT
253 AGTAACTAGCCTTTCAAAGGCATGAGTGACTATA--AATGGACTTTTCTTATCAATAGATGGCTT
* *
236258 TCACTTCACATTTCCTAAGGT
316 TCGCTTCACATTTCCTAAGGA
** * * * *
236279 AAGTATCCAATTATGATCTGTTTTAACAAAAAATGAACAGAAAAAGTTCAACTTAAATTTATTTA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAA-A-AAAAAATTCAACTTAAAATAATTTA
* * * * *
236344 CAAGATTATAAAACCCTTTAAA-TCGAGTAACTAGTATTTCAAGGGGATGAGTGACTATAAATGG
63 TAAGATTATAAAACCATTAAAAGT-GAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGG
* * * ** * * *
236408 ACTTCTT-TTGTCA-AGGGATGGCTTTCACTTCATTTTTCTTAAGGCAAACATCCACTTATGATA
126 ACTT-TTCTTATCATA--GATGG-TTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATA
* * *
236471 TTTTTTAACCAAAAATAAAAAAAA-TCAACTTAAAATTATTTATAAGACTT-TAAATCATTCAAA
186 TGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGA-TTATAAACCATTCAAA
* * * * *
236534 GCAAGTAATTAGCCTTTCGAAGGCATG-GATGACTATAAATGGACTTTTCTTGTCATTAGATGTC
250 GCAAGTAACTAGCCTTTCAAAGGCATGAG-TGACTATAAATGGACTTTTCTTATCAATAGATGGC
* * * *
236598 ATTCGATTCACATTTCCTGAGGC
314 TTTCGCTTCACATTTCCTAAGGA
* *
236621 AAACATCCAATTACGATCTATTTTA-ATAACAAATG--AAAAAAATTCAACTTAAAATCATTTAT
1 AAACATCCAATTATGATCTATTTTACA-AA-AAATGAAAAAAAAATTCAACTTAAAATAATTTAT
* * *
236683 AAGATTATAAAACTATTTAAAA-TGACTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGA
64 AAGATTATAAAACCA-TTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGA
* * ** ** ** * * * *
236747 ATTTTCTTGTCA-ATGAATATTTTTTGCTTCACATGTTCTGATGTGAACATCCAATTATGATCTA
127 CTTTTCTTATCATA-G-AT-GGTTTTAATTCACAT-TTCCAAGGTAAACATCCAATTATGATATG
* * * *** *
236811 TTTTAACAAAAAATAAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACTATTTGTACC
188 TTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGC
* * * * * ** * * *
236876 GAGTAATTAGGCTTTCAAAGGCATGAATGGCTATCTATGGACTTTTCTTGTCCATTA-ATGGCTC
252 AAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTAT-CAATAGATGGCTT
* * * *
236940 TCGCTTTACGTTT--TTAGTGT
316 TCGCTTCACATTTCCTAAG-GA
* * * * *
236960 AAACATCAAATTATGATCTATGCGTAACAAACAAA--AAGAAAAAAAGTT-AATTTAAAATTATT
1 AAACATCCAATTATGATCTAT--TTTACAAA-AAATGAA-AAAAAAA-TTCAACTTAAAATAATT
* * * ** *
237022 TTTAA-AGTTATAAAATCACTT-AAAGGGAGTAACTAGGCTTTCAAAAG-ATGAGTGACTATAAA
61 TATAAGA-TTATAAAACCA-TTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAA
* * ** * * * * *
237084 TGGACTTCTC-TAGTCAATGGATGGCTTTTGCTTCATATTTCTTAAAGAAAACATCCAATTCTGA
123 TGGACTTTTCTTA-TC-ATAGATGG-TTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGA
** * *
237148 TATGTTTTAATGAAAAATGGAAAAAAA---AATTTAAAATCATTTATAAGATTATAAAACCATAT
184 TATGTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCAT-T
* * * * * * * * *
237210 -AAAGTAAATACCTTGTCTTTCAAGGGCATGAGTGATTATAAATGGACTTTTCTTGTCAATGGAT
246 CAAAGCAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGAT
* * ** ** * *
237274 GGCTTTTGATTCATGTTTTTTGAGAA
311 GGCTTTCGCTTCACATTTCCTAAGGA
* * * * * * * * * * *
237300 AAAAATCCACTAATGATTTATTTTAACTAAAAATGAAAAAACAATTTCCATTTAGAATCATTTAC
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAA-AAATTCAACTTAAAATAATTTAT
* * ** * * * * *
237365 AAGATTATAAAATCATTTAAAGCAAGTAA-TAAGCCATTTTAGGGCATAAGTGACTATAAAGGGA
64 AAGATTATAAAACCATTAAAAGTGAGTAACT-AG-TATTTAAAGGCATGAGTGACTATAAATGGA
** * * * *** ** ** * *
237429 CTTTTCTTGCCAATGGTTGGCTCTCGTTTCATGTTTTTTAAGGCAAATATCCAATTATGATATGT
127 CTTTTCTTATC-ATAGATGG-TTTTAATTCA-CATTTCCAAGGTAAACATCCAATTATGATATGT
* * * * * *
237494 TTTAACTGAAAAAGAAAAGAAATTCAACTTAAAATCACTTATAAGATTATAAAACCATTTAAAGT
189 TTTAAC-CAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGC
* ** * * * * * * *
237559 GAGTAACTAGTATTTCAAAGGCATAAGTGGCTATAGATGAACTTTTCTTGTCAATGGATGGCATT
252 AAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTT
* *
237624 CACTTCATGC-TTT-CTAAGGC
317 CGCTTCA--CATTTCCTAAGGA
* * * * * * *
237644 AAATATCCAATTATAATTTGTTTGAACTAAAAATG-AAAAAAAA-T-AACTTAAAATCATTTATA
1 AAACATCCAATTATGATCTATTT-TACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * * ** *
237706 AGATTTTAAAACCATT-TAAG-GCAGTTAACTAGCATTTGGAAGGCATGAATGACCCTAAATTGA
65 AGATTATAAAACCATTAAAAGTG-AG-TAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGA
* * * ** * * * * * *
237769 CTTTTCTTGTCAATGGATGATTTTTCCTTCACGTCTCTTAAGGTAAACATCCAATTATCATTTAT
127 CTTTTCTTATC-ATAGATG-GTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGT
* * * ** **
237834 TTTAACAAAAAATAAAAAAAATTCAAGTTAAAATCATTTATAAGATTATAAAACTATTTGAAGTG
189 TTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGCA
* * * * ** *
237899 AGTAATTAAG-CTTTCAAAGGCATGAATTACTATAGATGGACTTTTCTTATCAATTCATAGCTTT
253 AGTAACT-AGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTT
* ** * *
237963 CGCTTAACATTTTTTTAGGT
317 CGCTTCACATTTCCTAAGGA
* * * * * * * * *
237983 AAGCATCAAATTA-GATTTATGTGTAACAAAAAAT-ACAAAAAAAGTCAATTTAAAATCATTTTT
1 AAACATCCAATTATGATCTAT-T-TTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTAT
* * ** *
238046 AA-AGTTATAAAATCACTT-AAAGTGAGGAACTAGGCTTTCAAAGG-ATGAGTTACTATAAATGG
64 AAGA-TTATAAAACCA-TTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGG
* * *** ** * *
238108 ACTTCTC-TAGTCAATGGATGGCTTTTCCCTCATGTGTCCCAAGGTAAATATCCAATTATGATCA
126 ACTTTTCTTA-TC-ATAGATGG-TTTTAATTCACAT-TTCCAAGGTAAACATCCAATTATGAT-A
* ** * *
238172 -ATTTTAATGAAAAGTGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
186 TGTTTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAA
** * * * * * * * *
238236 AATAAGTAACTTGTCTTTCAAGGGCATAAGTGACCATAAATGGAC-TTTCTTGTTAATGGATGGC
249 AGCAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGC
* * ** * *
238300 TCTCGGTTCACATTTTTTGAGGC
314 TTTCGCTTCACATTTCCTAAGGA
* * * * * * * * *
238323 CACCATCCAATGATAATTTGTTTTA-ATCAAAACTGAAAAAAAAAATTCAACTTAGAATCATTTA
1 AAACATCCAATTATGATCTATTTTACA--AAAAATG-AAAAAAAAATTCAACTTAAAATAATTTA
* * * ** * * * ** * ** * *
238387 CAAGATTCTAAAACCCTTTGAAGCGAGTAACAAGCCATTCCAAGGTATGAGCAACTACAAATGAA
63 TAAGATTATAAAACCATTAAAAGTGAGTAACTAG-TATTTAAAGGCATGAGTGACTATAAATGGA
* * * * * ** ** * *
238452 CTTTTGTTGTCAATGGGTAGCTTTTGTTTCATGTTTTTCGAGGTAAACATCCAATTATGATATGT
127 CTTTTCTTATC-ATAGAT-GGTTTTAATTCA-CATTTCCAAGGTAAACATCCAATTATGATATGT
* * * * *
238517 TTTAACCAAAGAAGAAAAGAAATTCAACTTAACATCATCTATAAGATTATAAAACCATAT-AAGG
189 TTTAACCAAA-AATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCAT-TCAAAG
* * * * * * * * * ** *
238581 CGAGTAATTTGTCTTTCGAGGGCATGAATGACTATAAATGGACTTTTTTTTGTTGATGGATGGCT
251 CAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGAC-TTTTCTTATCAATAGATGGCT
* * *
238646 TTCGCTTCACGTTTCTTATGGA
315 TTCGCTTCACATTTCCTAAGGA
* * * * * *
238668 AAACATCCAATGATGA-CTTGTTTTAACTAAAAATG-AAAAAAAATTCAACTTAAAGTCATTTAC
1 AAACATCCAATTATGATC-TATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTAT
* * * * * * ** * * **
238731 ATGATTCTAAAACAATTTAAAAG-GGGTAACAAGCCATTCCAAGTCATGA-TGACTGTAAATACA
64 AAGATTATAAAACCA-TTAAAAGTGAGTAACTAG-TATTTAAAGGCATGAGTGACTATAAATGGA
* * * *** * * *** * * * *
238794 CTTTTCTTGTCAATGGATTGCTTTCGCTTTACGTTTCCCAAAACAAACATTCAATTATTATTTCT
127 CTTTTCTTATC-ATAGA-TGGTTTTAATTCACATTT-CCAAGGTAAACATCCAATTATGATATGT
* * * * * * **
238859 TTTAACCAAAAAT-AAAAAAATTTAATTTAAAATTATTTATAAGATTTTAAAACATTGAAAGTGA
189 TTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCAA
* * * * * * * * * *
238923 GTAACTAGTCTTTCGAAGGTATAAGCGACTATAAATGGACTTCTCTTGTTAATGGATGGCTTTTG
254 GTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTCG
** *
238988 CTT-ACATTTTTTGAGGCA
319 CTTCACATTTCCTAAGG-A
* * * * * * * *
239006 AAA-ATTCAATTATGATATCCTTTAACCAAAAATGAAAACAAAATTCTACTTAAAATCATTTATA
1 AAACATCCAATTATGATCT-ATTTTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * ** * ** * ** *
239070 AGAATACAAAACAATTCAAACCGACTAACTAGTACTTCGAATGTGTGAGCGACTATAAATGGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTA-TTTAAAGGCATGAGTGACTATAAATGGACT
** * * ** ** ** * * * *
239135 TCGC-TAGTCAATGGATGGCTTTCGTTCATGTTTCTTGAGGCAAAGATCCAATTATTATCTGTTT
129 TTTCTTA-TC-ATAGATGGTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTTT
* * * *
239199 TAATCAAAAATAAAAAAAATTCAACTTAAGATCATTTATAAGATTATAAATCATTCAAAGCGAGT
191 TAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCAAGT
* ** * *
239264 AGCTAGCCTTTTGAAGGCATGAGTGACTATAAATGGA-TGTTTCTTGTCAATGGATGGCTTTCGC
256 AACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACT-TTTCTTATCAATAGATGGCTTTCGC
* *
239328 TTCATGC-TTT-TTGA-GA
320 TTCA--CATTTCCTAAGGA
* * * * * * *
239344 TAAAAATTCAATTATAATATGTTTTAACCAAAAAA-G--AAAAAAATACATA-TTAAAATGATTT
1 -AAACATCCAATTATGATCTATTTT-A-CAAAAAATGAAAAAAAAATTCA-ACTTAAAATAATTT
* * * ** *
239405 ATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTCGAAGATATGAGTGACTATAAATGA
62 ATAAGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGG
* * * * * * * * * * *
239470 ACTTCTC-TAGTAAATGGATAGCTTTCACTTCATGC-TTTTCGAGGCAAACAACCAATTATGATC
126 ACTTTTCTTA-T-CATAGAT-GGTTTTAATTCA--CATTTCCAAGGTAAACATCCAATTATGATA
* * *
239533 TGTTTTAACCAATAATAAAAAAAATTCAACTTAAAATCATTTATAAGAGTATAAATCATTCAAAG
186 TGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAG
** * * * * * * * **
239598 TGAGTAACTAACCTTTCGAAGGCATAATTGACTATGAATGGACTTTTCTTCTCACTAGATTTCTT
251 CAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTT
** * *
239663 TCGCTTCATGTTTCCTGAGGC
316 TCGCTTCACATTTCCTAAGGA
* * * * *
239684 AAACATCCAATTATGATTTGTTTTAACAACAAATGAAAAAAAAATTCAACCTAAAATAGTTTATA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
** * * * * * * * *
239749 AGATTATAAAATAATTTAAAGCGAGTAATTAGTCTTCCGAAA-GCATGAATGATTGTAAATGGAC
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTATT--TAAAGGCATGAGTGACTATAAATGGAC
** ** * * ** *
239813 TTTTCTTGCCAATAGATATTTTTGATTCATC-TTTCTCGAGAAAAACATCCAATTATGATTTGTT
128 TTTTCTTATC-ATAGATGGTTTTAATTCA-CATTTC-CAAGGTAAACATCCAATTATGATATGTT
* ** ** * * * ***
239877 TTGATAAAAAATAAGAAGCAATTCAACTTAAAATCATTTATAATATTATAAAACTATTGAAATTG
190 TTAACCAAAAATAA-AAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGCA
* * * * * * * *
239942 AGCAACTAGGCTTTCGAAGGCATGAGTGAATATAAATAGACTTTTCCTGTCAATGGATGGCTTTC
253 AGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTC
* * *
240007 ACTTCACATTT-CTCATGA
318 GCTTCACATTTCCTAAGGA
* *
240025 CAAACATCCAATTATGATCTGTTTTAGTCAAAAAA-GAAAAAAGAAGATTCAACTTAAAATCATT
1 -AAACATCCAATTATGATCTATTTTA--CAAAAAATGAAAAAA-AA-ATTCAACTTAAAATAATT
* * * * * * * * * *
240089 TATAAGAGTATAAAACCATTTAAAGAGAGTAATTAGTCTTTCGAAGGTATGAATGATTCTAAATG
61 TATAAGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATG
* * * * * * * * *
240154 GACTTTTCTTGTCAATTGATAGCTTTCAATTCACCTTTCCTGATGCAAA-ATCCAATTATGATCT
125 GACTTTTCTTATC-ATAGAT-GGTTTTAATTCACATTTCC-AAGGTAAACATCCAATTATGATAT
* * * * * *
240218 CTTTTGACCAAAAATGAAAAAAAAATTAAACTTAAAATTC-TTTTTAAGATTTTAGAA-CATTAA
187 GTTTTAACCAAAAAT--AAAAAAAATTCAACTTAAAA-TCATTTATAAGATTATA-AACCATTCA
** * * * * * * * * * * *
240281 AAGTGAGTAACTAGTCTTTCGAAGGTATAAGCGACTACAAATGGACTTTTTTTATGAATGGGTAG
248 AAGCAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGG
* * *
240346 CTTTTGCTT-ACATTGTTC-GAGGCA
313 CTTTCGCTTCACATT-TCCTAAGG-A
* * * * * * *
240370 AAA-AACCAACTATGATATCTTTTAACCAAAAAT-AAAAAAAAA-TCTACTTAAAATCATTTATA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * *
240432 AGATTACAAAACCATTCAAAGCGACTAACTAGTATTTCAAACGCATGAGTGACTATAAATGGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGACT
** * * * ** ** * * * *
240497 TCGCTAATCAATGGATGGCTTTCGTTCATGTTTCTTC-AGGCAAAGATCCAATTATTATCTGTTT
129 TTTCTTATC-ATAGATGGTTTTAATTCACATTTC--CAAGGTAAACATCCAATTATGATATGTTT
* * * * * *
240561 CAATCAAAAATAAAAAAAAATTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGCGAG
191 TAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCAAG
* * * * * * * *
240626 TAGCTAGCCTTTCGAAGGTATGAGTGACTATAAATGGACATTTT-TTGTTAATGGATGCCGTTCG
255 TAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGAC-TTTTCTTATCAATAGATGGCTTTCG
* * *
240690 CTTCATACTTT-TTGA-GA
319 CTTCACA-TTTCCTAAGGA
* * * * * * * * *
240707 TAAAAATCTAATTATAATATGTTTT------AA-CAAAAAAAAATGCAGCTTAAAATCATTTATA
1 -AAACATCCAATTATGATCTATTTTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * *
240765 AGATTATAAAGCCATTGAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGACTATAAATAGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGACT
* * * * * * * * * * * ** *
240830 TCTC-TAGTAAATGGATGGCTTTCACTTGATACTTCTCGATGTAAATATATAATTATGATTTGTT
129 TTTCTTA-T-CATAGATGG-TTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTT
* * * * **
240894 TTAACCAATAATAAAAAAAATTCAACTTAAAATCATTTATAAGAGTATAAATCATTTAAAGTGAG
190 TTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCAAG
* * * * * * * *
240959 TAACTAACCTTTCGAAGGCATGAGTGACTATGAATGGACTTTTGTTGTCACTGGATGACTTTCGC
255 TAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTCGC
* * * *
241024 TTCACGTTTCTTGAGGC
320 TTCACATTTCCTAAGGA
* * *
241041 AAACATCCAATTATGATCTGTTTTAACAAAAAAT-AAAAAAAAATTCAACCTAAAATCATTTATA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
** * ** * * * * * ** *
241105 AGATTATAAAATAATTTAAAGCAAGTAATTGGTTTTTCGAAGGCATGAATGTTTGTAAATGGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGACT
** * * * * ** ** ** *
241170 TTTCTTGCCAATTGATAGTTTTTTATTCACCTTTCTTGAGACAAATTTCCAATTATGATCTGTTT
129 TTTCTTATC-ATAGAT-GGTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTTT
* * * * * * *
241235 TGATCAAAAATGAAAAACAATTCAACTTAAAATTATTTATAATATTATAAAACCATTGAAAGCGA
191 TAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAGCAA
* * * * * * * * * *
241300 GTAACTAAG-CTTTCGAAGGCATTAGTGAATATAAATAGATTTTTCTTCTTAATGGATGGTTTTT
254 GTAACT-AGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTC
*
241364 ACTTCACATTT-CTCAA-GA
318 GCTTCACATTTCCT-AAGGA
* * *
241382 CAAA-ATCCAATTATGATCTATTTTAGCCAAAAAT-AAAAAAAAGATTCAACTTTAAATCATTTA
1 -AAACATCCAATTATGATCTATTTTA-CAAAAAATGAAAAAAAA-ATTCAACTTAAAATAATTTA
* * * * * * * * * *
241445 TAAGAGTT-TAAAATCTTTTAAAGCGAGTAATTAACCT-TTTAAAGGCATGAATGATTCTAAATA
63 TAAGA-TTATAAAACCATTAAAAGTGAGTAACT-A-GTATTTAAAGGCATGAGTGACTATAAATG
* * * * * * * * *
241508 GACTTTTCTTTTGAATTGCTAGCTTTCAATTCACCTTTCCCAAGGCAGACATCCAATTATGATCA
125 GACTTTTCTTAT-CATAGAT-GGTTTTAATTCACATTT-CCAAGGTAAACATCCAATTATGAT-A
* * * * * *
241573 -GTTTTGACAAAAAATAAAAATAAAATTCAACTTAAAATAATTTATAAGATTTTAAAACATTGAA
186 TGTTTTAACCAAAAAT-AAAA-AAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAA
* ** * * ** * * * * * * *
241637 TGTGAGTAACTAGACTTTCAAAGGCATAAACGACTGTAAACGGACTTCTCTTGTTAATGGATGGT
249 AGCAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGC
* * *
241702 TTTCCCTT-ACGTTT-TTCAAGGCA
314 TTTCGCTTCACATTTCCT-AAGG-A
* * * * * * *
241725 AAA-ATCCAATTATTATATCTTTTAACCAAAAATG-AAAAACAATTCTACTTAAAATCATTTATA
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * * *
241788 AGATTACAAAACCATTCAAAGTGACTAACTAGTATTTCGAACGCATGGGTGACTATAAATGGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGACT
** * * * ** ** ** * * * *
241853 TCAC-AAGTCAATGGATGGCTTTCGTTCATGTTTCTTGAGGCAAAGATCCAATTATTATCTGTTT
129 TTTCTTA-TC-ATAGATGGTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGTTT
** * * * ** *
241917 TAATTAAAAGTAAACAAAATTCAACTTAAAATCATTTATAAGACTATAATTCATTCATAGCGAA-
191 TAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGC-AAG
* * * * * *
241981 TAGCAAGGCTTTTC-AAGGCATGAGTGACTATAGATGGA-TATTTCTTATCAATGGATAGCTTTC
255 TAACTA-GCCTTTCAAAGGCATGAGTGACTATAAATGGACT-TTTCTTATCAATAGATGGCTTTC
* * *
242044 GTTTCATGC-TTT-TTGA-GA
318 GCTTCA--CATTTCCTAAGGA
* * * * * * * *
242062 TAAAAATCCAATTATAATGATTTTTTAACCAATAA-GAAAAAAATAA--CAGCTTAAAATCATTT
1 -AAACATCCAATTATGAT-CTATTTT-ACAAAAAATGAAAAAAA-AATTCAACTTAAAATAATTT
* * * * * * *
242124 ATAAGATTATAAAACCATTGAAAGCGAGTAATTCGTATTTCGAAGGCATGAGTGAGTATAAA--A
62 ATAAGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGG
** * * * *** * * *
242187 AAATTTCTCTAGTCAATGGATGGCTTTCACTTCATGCTTCTCGAGGCAAACACCCAATTATGATA
126 ACTTTTCT-TA-TC-ATAGATGG-TTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATA
* * *
242252 TGTTTTAACC-AATA-AAAAAAAATTCAACTTAAAATCATTTATAAGAGTATAAATCATTCAAAG
186 TGTTTTAACCAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAG
* * * * * *
242315 CAAGTAACTAACATTTCGAAA-GCATGAGTGACTATGAATGGACTTTTCTTGTCATTCGATGGCT
251 CAAGTAACTAGCCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCT
* ** * * *
242379 TTTGCTTCATGTTTCTTGA-GT
315 TTCGCTTCACATTTCCTAAGGA
* * * *
242400 AAACATCCAATTATGATCTATTTTAACAACAAGTG-AAAAAAAATTCAA-TCTAAAATCAGTTAT
1 AAACATCCAATTATGATCTATTTT-ACAAAAAATGAAAAAAAAATTCAACT-TAAAATAATTTAT
* * * * * * * * *
242463 AAGATTATAAAACAATTTAAAGCGAGTAATTAGTCTTTCGAAGGCATGAATGATTGTAAATAGG-
64 AAGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAAT-GGA
* * * * * *** * * *
242527 CTTTTCTTATCAATTGATTGTTTTTGATTCACCTTTCTCGACACAAACATACAATTATGATCTAT
127 CTTTTCTTATC-ATAGA-TGGTTTTAATTCACATTTC-CAAGGTAAACATCCAATTATGATATGT
* ** * * * **
242592 TTTGATTAAAAATGAAAAACAATTTAACTTAAAATCTTTTATAAGCTATTA-AAA-CATTGTAAG
189 TTTAACCAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAG--ATTATAAACCATTCAAAG
** * * ** * * * *
242655 TGAGTAATTAGTCTTTTGAAGCCATGAGT-AGCTCTAAATGGACTTTCCTTGTCAATAGATGGCT
251 CAAGTAACTAGCCTTTCAAAGGCATGAGTGA-CTATAAATGGACTTTTCTTATCAATAGATGGCT
* * *
242719 TTCACTTCACGTTTCCTAAGGC
315 TTCGCTTCACATTTCCTAAGGA
* * * * * * *
242741 AAACATCTAA-TATGATCTGTATTAACTAAAAAT--AAAGAAAAGT-AACTTAAAATCATTTATA
1 AAACATCCAATTATGATCTAT-TTTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * ** * * * *
242802 AGACTAT-AAATCACTT-AAAGCAAGTTACTAGCCT-TTTGAAGACATGAGTGACTGTAAATGGA
65 AGATTATAAAACCA-TTAAAAGTGAGTAACTAG--TATTTAAAGGCATGAGTGACTATAAATGGA
* * * ** * ** * ** *
242864 CTTTTTTTGTCACTAGATAGTTTTCGCTGCATGTTTGCTAAGACAAACATCCAATTATGATCTGT
127 CTTTTCTTATCA-TAGATGGTTTT-AATTCACATTT-CCAAGGTAAACATCCAATTATGATATGT
* * *** * *
242929 TTTAGCTAAAAATGACAAAAGGGTTCAACTTAAAATCATTTATAAGATTATAAAACTATTTAAAG
189 TTTAACCAAAAAT-A-AAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAG
* ** * * * * *
242994 CATGTAACTAGTATTTCGAAGGTATGAGTGGCTATAAATGGACATTTT-TTGTCAATGGAT-GCT
251 CAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGAC-TTTTCTTATCAATAGATGGC-
*
243057 TTTCGCTTCACATTT-CTAGAGGT
314 TTTCGCTTCACATTTCCTA-AGGA
* * * * *
243080 AAA-ATCCAATTATGATATGTTGTAACCAAAAAT-AAAAAAAAATTCAACTTAAAATAATTTACA
1 AAACATCCAATTATGATCTATT-TTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * * * *
243143 AGTTTATAAAACCATTTAAAGTGAGTTAGTCGTATTTTGAAGGCATGAGTGACTATAAATGGACT
65 AGATTATAAAACCATTAAAAGTGAGTAACTAGTA-TTTAAAGGCATGAGTGACTATAAATGGACT
* * * * * * *
243208 TTTCTTATCAATGGATGCCTTTTACTTTA-AGTTTTCTAAGGTAAACATCCAATGATGGCT-TGT
129 TTTCTTATC-ATAGATG-GTTTTAATTCACA--TTTCCAAGGTAAACATCCAATTAT-GATATGT
* * * * * * * *
243271 TTTAGCTAGAAATTAAAAACAAATTCAATTTAAAATTATTTTTAATATTATAAAACCATTTAAAG
189 TTTAACCA-AAAATAAAAA-AAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAAG
** * ** * * * * *
243336 TGATTAACTAGTATTTCGAAGGCATGAGTGGCCATAAATGGGCTTTTCTTATCAATGGATGGCTT
251 CAAGTAACTAGCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTT
** * *
243401 TCGCTTCATGTTTCCTGAGGC
316 TCGCTTCACATTTCCTAAGGA
* *** * * * * * * ** * *
243422 AAAGATCTGTTTATAAACTATATTAATAAAAAATG--AAAAACA-TCATCCGAAAATCATGTATA
1 AAACATCCAATTATGATCTAT-TTTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATA
* * * ** * *
243484 AGATTATAAAACCATTTAAAA-TGAATAATTAAGCT-TTTGACTGCATGAATGACTATAAATAGA
65 AGATTATAAAACCA-TTAAAAGTGAGTAACT-AG-TATTTAAAGGCATGAGTGACTATAAATGGA
* * * ** * ** * *
243547 CTTTTCTTATTAATTGATAGCTTTCGCA-TGATGTTTCTAGAGGCAAACATCCAATTATGATATG
127 CTTTTCTTA-TCATAGAT-GGTTT-TAATTCACATTTCCA-AGGTAAACATCCAATTATGATATG
* * * * * *
243611 -TTTCACTCAAAACTGAAAAAAAATTCAACTTAAAATCGTTTAAAAGCTTATAAAACCATTTAAA
188 TTTTAAC-CAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAACCATTCAAA
* * ** * * * *
243675 GCGAGTAAGTAGTATTTCGAAA-GTAGGAGTGACTATAAATGGACTTTTCTT-GCAAATGGATGG
250 GCAAGTAACTAGCCTTTC-AAAGGCATGAGTGACTATAAATGGACTTTTCTTATC-AATAGATGG
* *
243738 CTTTCGCTTCACATTT-CTCGAGGC
313 CTTTCGCTTCACATTTCCT-AAGGA
* * * * *
243762 AAACATCCAAATATGATATTTTTTA-ATCAAAAATG-AAAACAAA-TCAACTTAAAATCATTTAT
1 AAACATCCAATTATGATCTATTTTACA--AAAAATGAAAAAAAAATTCAACTTAAAATAATTTAT
* * * * * * * * *
243824 AAGATTATAAAACCATTTAAAGAGAATAACTTGTCTTTCAAGGGTATGAGTCACTATAAATGAAC
64 AAGATTATAAAACCATTAAAAGTGAGTAACTAGTATTT-AAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
243889 TTTTTTTGTCAATCGATGGCTTTTACTTCACATTTCTTGAA-GCAAACATCCACTGATGATTTGT
128 TTTTCTTATC-ATAGATGG-TTTTAATTCACATTTC--CAAGGTAAACATCCAATTATGATATGT
* * * *
243953 TTTAATCAAAATTGAAAAACAATTAAACTTAAAAT
189 TTTAACCAAAAAT-AAAAAAAATTCAACTTAAAAT
243988 AGCCTACATG
Statistics
Matches: 6834, Mismatches: 1538, Indels: 725
0.75 0.17 0.08
Matches are distributed among these distances:
332 19 0.00
333 219 0.03
334 38 0.01
335 2 0.00
336 29 0.00
337 276 0.04
338 745 0.11
339 1111 0.16
340 1083 0.16
341 1031 0.15
342 1223 0.18
343 353 0.05
344 428 0.06
345 136 0.02
346 92 0.01
347 49 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (336 bp):
AAACATCCAATTATGATCTATTTTACAAAAAATGAAAAAAAAATTCAACTTAAAATAATTTATAA
GATTATAAAACCATTAAAAGTGAGTAACTAGTATTTAAAGGCATGAGTGACTATAAATGGACTTT
TCTTATCATAGATGGTTTTAATTCACATTTCCAAGGTAAACATCCAATTATGATATGTTTTAACC
AAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTCAAAGCAAGTAACTA
GCCTTTCAAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGGCTTTCGCTTCACA
TTTCCTAAGGA
Found at i:240119 original size:21 final size:20
Alignment explanation
Indices: 240079--240119 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
240069 AGATTCAACT
* *
240079 TAAAATCATTTATAAGAGTA
1 TAAAACCATTTAAAAGAGTA
240099 TAAAACCATTTAAAGAGAGTA
1 TAAAACCATTTAAA-AGAGTA
240120 ATTAGTCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.29
Consensus pattern (20 bp):
TAAAACCATTTAAAAGAGTA
Found at i:243852 original size:19 final size:20
Alignment explanation
Indices: 243811--243852 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
243801 CAAATCAACT
* **
243811 TAAAATCATTTATAAGATTA
1 TAAAACCATTTATAAGAGAA
243831 TAAAACCATTTA-AAGAGAA
1 TAAAACCATTTATAAGAGAA
243850 TAA
1 TAA
243853 CTTGTCTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (20 bp):
TAAAACCATTTATAAGAGAA
Found at i:244448 original size:151 final size:151
Alignment explanation
Indices: 244238--244522 Score: 347
Period size: 152 Copynumber: 1.9 Consensus size: 151
244228 TCATGCTTCT
* *
244238 TAAGACAAACATCCAATTATGATCTGTTTTAACTAAAAATAAAAAAAAATCAACTTAAAATCATT
1 TAAGACAAACATCCAATTAGGATCTGTTTTAACTAAAAATAAAAAAAAATCAACTTAAAATAATT
* * * * *
244303 CATAAAATCATAAATC-ATTCAAAGCAAGTAACTAGGCTTTCGAAGGTATGAGTGATTATAAATG
66 CATAAAATCATAAAACTATTCAAAGCAAGTAACTAGGCTTTCAAAAGCATGAGTGACTATAAATG
244367 GACTTTTCAAAGCAAGTTTCC
131 GACTTTTCAAAGCAAGTTTCC
* * * * * * *
244388 TAAGGCAAACATCCAATTAGGATCTTTTTTTATTGAAAAATGAAAAAAATTTAACTTAAAATAAT
1 TAAGACAAACATCCAATTAGGATCTGTTTTAACT-AAAAATAAAAAAAAATCAACTTAAAATAAT
* * * * * * * * *
244453 TTATAAGATTATAAAACTATTGAAAGCGAGTAATTAGTCTTTCAAAAGCATGAGTGGCTATAAGT
65 TCATAAAATCATAAAACTATTCAAAGCAAGTAACTAGGCTTTCAAAAGCATGAGTGACTATAAAT
244518 GGACT
130 GGACT
244523 ATTCTTGCCA
Statistics
Matches: 110, Mismatches: 23, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
150 29 0.26
151 39 0.35
152 42 0.38
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.31
Consensus pattern (151 bp):
TAAGACAAACATCCAATTAGGATCTGTTTTAACTAAAAATAAAAAAAAATCAACTTAAAATAATT
CATAAAATCATAAAACTATTCAAAGCAAGTAACTAGGCTTTCAAAAGCATGAGTGACTATAAATG
GACTTTTCAAAGCAAGTTTCC
Found at i:244617 original size:171 final size:167
Alignment explanation
Indices: 244382--244977 Score: 636
Period size: 171 Copynumber: 3.5 Consensus size: 167
244372 TTCAAAGCAA
* * * * * *
244382 GTTTCCTAAGGCAAACATCCAATTAGGATCTTTTTTTATTGAAAAATGAAAAAAATTTAACTTAA
1 GTTTCC-AAGGTAAACATCCAATTATGATC-TGTTTTAATCAAAAATGAAAAAAATTCAACTTAA
* * * * *
244447 AATAATTTATAAGATTATAAAACTATTGAAAGCGAGTAATTAGTCTTTCAAAAGCATGAGTGGCT
64 AATAATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGGCT
* * *
244512 ATAAGTGGACTATTCTTGCCAATGGATGACTTTTGCTTCAC
129 ATAAATAGACT-TTCTTGTCAATGGATG-CTTTTGCTTCAC
* * * *
244553 GTTTACCAAGGTAAACATCCACTTATGATCCGTTTTAATGAGAAATGAAAAAGAATTCAACTTAA
1 GTTT-CCAAGGTAAACATCCAATTATGATCTGTTTTAATCAAAAATGAAAAA-AATTCAACTTAA
* * * * *
244618 AATAATTTCTAAGATTATAAAACCATTTAAAGCGAGCAACTAGTATGTCGAAGGCATGATTGGCT
64 AATAATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGGCT
* * * *
244683 ATAAATAGACTTTTCTTGTCAACGAATGGCTTTTACTTCTC
129 ATAAATAGAC-TTTCTTGTCAATGGAT-GCTTTTGCTTCAC
* * ** * *
244724 ATTTCCTGAGGTAAATGTCCAATTATAATATGTTTTAA-CAAACAATGAAAAAAATTCAACTTAA
1 GTTTCC-AAGGTAAACATCCAATTATGATCTGTTTTAATCAAA-AATGAAAAAAATTCAACTTAA
* * * * ** * *
244788 AATCATTTACAAGATTATCAAACCATTTAAATCGAGTATTTAGTATTTCAAAGGCGTGAGTGACT
64 AATAATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGGCT
* * *
244853 ATAAATAGACTTCTCTAGTCAATGGATGGTTTTGCTTCAT
129 ATAAATAGACTT-TCTTGTCAATGGATGCTTTTGCTTCAC
* *
244893 GTTTCTCAAGGAAAACATCCAATTATGATCTGTTTTAATCAAAAATAAAAAACAATTCAACTTAA
1 GTTTC-CAAGGTAAACATCCAATTATGATCTGTTTTAATCAAAAATGAAAAA-AATTCAACTTAA
* *
244958 AATCATTTATAAGACTATAA
64 AATAATTTATAAGATTATAA
244978 GTCTTTCAAA
Statistics
Matches: 349, Mismatches: 66, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
169 48 0.14
170 141 0.40
171 156 0.45
172 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (167 bp):
GTTTCCAAGGTAAACATCCAATTATGATCTGTTTTAATCAAAAATGAAAAAAATTCAACTTAAAA
TAATTTATAAGATTATAAAACCATTTAAAGCGAGTAACTAGTATTTCAAAGGCATGAGTGGCTAT
AAATAGACTTTCTTGTCAATGGATGCTTTTGCTTCAC
Found at i:245004 original size:21 final size:21
Alignment explanation
Indices: 244980--245030 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
244970 GACTATAAGT
244980 CTTTCAAAGTGAGTAACTAGC
1 CTTTCAAAGTGAGTAACTAGC
245001 CTTTCAAAGTGAGTAACTAGC
1 CTTTCAAAGTGAGTAACTAGC
*
245022 CTTCCAAAG
1 CTTTCAAAG
245031 GCATGAGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (21 bp):
CTTTCAAAGTGAGTAACTAGC
Found at i:245197 original size:190 final size:190
Alignment explanation
Indices: 244836--245199 Score: 461
Period size: 190 Copynumber: 1.9 Consensus size: 190
244826 TTTAGTATTT
* *
244836 CAAAGGCGTGAGTGACTATAAATAGACTTCTCTAGTCAATGGATGGTTTTGCTTCATGTTTCTCA
1 CAAAGGCATGAGTGACTATAAATAGACTTCTCTAGTCAATGGATGCTTTTGCTTCATGTTTCTCA
* *
244901 AGGAAAACATCCAATTATGATCTGTTTTAATCAAAAATAAAAAACAATTCAACTTAAAATCATTT
66 AGGAAAACATCCAATTATGATCTATTTTAATCAAAAATAAAAAACAATTCAACTTAAAATAATTT
** * *
244966 ATAAGACTATAAGTCTTTCAAAGTGAGTAACTAGCCTTTCAAAGTGAGTAACTAGCCTTC
131 ATAAGACTATAAACCATTCAAACTGAGTAACTAGCCTTTCAAAGTGAGTAACTAGCCTTC
* * *
245026 CAAAGGCATGAGTGACTATAAAT-GAACTTTTCTTGTCAATGGATGACTTTTTCTTCATGTTTCT
1 CAAAGGCATGAGTGACTATAAATAG-ACTTCTCTAGTCAATGGATG-CTTTTGCTTCATGTTTCT
** *
245090 TGA-GACAAACATCCAATTATGATCTATTTTAAT-AAAATATAAAAAA-ATTTC-ACTTAAAATA
64 CAAGGA-AAACATCCAATTATGATCTATTTTAATCAAAA-ATAAAAAACAATTCAACTTAAAATA
* * * * *
245151 ATTTTTAAGATTATAAAACCATTGAGACCT-AGTAACTAGTCTTTCAAAG
127 ATTTATAAGACTAT-AAACCATTCA-AACTGAGTAACTAGCCTTTCAAAG
245200 GTATGAGTGG
Statistics
Matches: 149, Mismatches: 19, Indels: 12
0.83 0.11 0.07
Matches are distributed among these distances:
189 22 0.15
190 74 0.50
191 53 0.36
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (190 bp):
CAAAGGCATGAGTGACTATAAATAGACTTCTCTAGTCAATGGATGCTTTTGCTTCATGTTTCTCA
AGGAAAACATCCAATTATGATCTATTTTAATCAAAAATAAAAAACAATTCAACTTAAAATAATTT
ATAAGACTATAAACCATTCAAACTGAGTAACTAGCCTTTCAAAGTGAGTAACTAGCCTTC
Found at i:245356 original size:169 final size:170
Alignment explanation
Indices: 244383--245583 Score: 575
Period size: 170 Copynumber: 7.0 Consensus size: 170
244373 TCAAAGCAAG
* * *** * *
244383 TTTCCTA-AGGCAAACATCCAATTAGGATCTTTTTTTATTGAAAAAT-GAAAAAAATTTAACTTA
1 TTTCCTAGAGGCAAACATCCAATTATGATC-TGTTTTAACAAAAAATAAAAAAAAATTCAACTTA
* * * * * * * * * * *
244446 AAATAATTTATAAGATTATAAAACTATTGAAAGCGAGTAATTAGTCTTTCAAAAGCATGAGTGGC
65 AAATAACTTACAAGACTAT-AAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGAC
* * * * * **
244511 TATAAGTGGACTATTCTTGCCAATGGATGACTTTTGCTTCACGT
129 TATAAATGGACTTTTCTAGTCAATGGATGGCTTTCACTTCA--T
* * * * ** * * *
244555 TTACC-A-AGGTAAACATCCACTTATGATCCGTTTTAATGAGAAATGAAAAAGAATTCAACTTAA
1 TTTCCTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTCAACTTAA
* * * * * * * ** * * *
244618 AATAA-TTTCTAAGATTATAAAACCATTTAAAGCGAGCAACTAGTATGTCGAAGGCATGATTGGC
66 AATAACTTAC-AAGACTAT-AAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGAC
* * * * *
244682 TATAAATAGACTTTTCTTGTCAACGAATGGCTTTTACTTC-T
129 TATAAATGGACTTTTCTAGTCAATGGATGGCTTTCACTTCAT
* ** * * * *
244723 CATTTCCT-GAGGTAAATGTCCAATTATAATATGTTTTAACAAACAAT-GAAAAAAATTCAACTT
1 --TTTCCTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTCAACTT
* * * * ** ** * * **
244786 AAAATCATTTACAAGATTATCAAACCATTTAAATCGAGTATTTAGTATTTCAAAGGCGTGAGTGA
64 AAAATAACTTACAAGACTAT-AAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGA
* * **
244851 CTATAAATAGACTTCTCTAGTCAATGGATGG-TTTTGCTTCAT
128 CTATAAATGGACTTTTCTAGTCAATGGATGGCTTTCACTTCAT
* *
244893 GTTT-CTCA-AGGAAAACATCCAATTATGATCTGTTTTAATC-AAAAATAAAAAACAATTCAACT
1 -TTTCCT-AGAGGCAAACATCCAATTATGATCTGTTTTAA-CAAAAAATAAAAAAAAATTCAACT
* * * ** * * * * *
244955 TAAAATCATTTATAAGACTATAAGTCTTTCAAAGTGAGTAACTAGCCTTTCAAA-G--TGAGTAA
63 TAAAATAACTTACAAGACTATAAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGA
** * * ** * *
245017 CTAGCCTTCCAAA-GG-CATGAGTGACTA-TAAATGAACTTTTCTTGTCAATGGATGACTTTT
128 CTA----T--AAATGGAC-T---TTTCTAGTCAATGGA--TGGCTT-TCACT---T--C--AT
* * * * * *
245077 TCTTCATGTTTCTTGAGACAAACATCCAATTATGATCTATTTTAATAAAATAT-AAAAAAATTTC
1 T-TTC------CTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTC
* ** * * * *** *
245141 -ACTTAAAATAATTTTTAAGATTATAAAACCATTGAGACCTAGTAACTAGTCTTTCAAAGGTATG
59 AACTTAAAATAACTTACAAGACTAT-AAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATG
* * * * *
245205 AGTGGCTCTAAATAGACTTTTCTTGTCAATGAATGGCTTTCACTTTGCA-
123 AGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTCAC-TT-CAT
*
245254 TTTCCT-GAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAA-TCAACTTAA
1 TTTCCTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTCAACTTAA
* * * * *
245317 AATCATTTACAAGATTATAAAGCCATTTAAA-AGAGTAACTAG-CATTTTGAAGGTATGAGTGAC
66 AATAACTTACAAGACTATAAA-CCATTCAAAGAGAGTAACTAGTC-TTTTAAAGGTATGAGTGAC
* **
245380 TATAAATGGACTTCTT-TAGTTAATGGATGGCTTTTGCTTCAT
129 TATAAATGGACTT-TTCTAGTCAATGGATGGCTTTCACTTCAT
* * * **
245422 TTTTCTAGATGTAAACATCCAATTATGATCTGTTTTAATGAAAAATAAAAAAAAATTCAACTTAA
1 TTTCCTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTCAACTTAA
* * * * * * *
245487 AATAACTTATAAGACTATAAATCATTCAAAGCGAGTAACTAATCTTTTAGAGGCATAAGTGACTA
66 AATAACTTACAAGACTATAAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGACTA
245552 TAAATGGACTTTTCTCA-TCAATGGATGGCTTT
131 TAAATGGACTTTTCT-AGTCAATGGATGGCTTT
245584 TGCTCCATGT
Statistics
Matches: 799, Mismatches: 167, Indels: 128
0.73 0.15 0.12
Matches are distributed among these distances:
166 9 0.01
167 2 0.00
168 12 0.02
169 208 0.26
170 261 0.33
171 152 0.19
172 7 0.01
173 6 0.01
174 4 0.01
175 1 0.00
176 5 0.01
177 3 0.00
180 2 0.00
181 1 0.00
182 1 0.00
183 4 0.01
184 8 0.01
185 3 0.00
186 7 0.01
187 3 0.00
188 2 0.00
189 23 0.03
190 33 0.04
191 35 0.04
193 7 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
TTTCCTAGAGGCAAACATCCAATTATGATCTGTTTTAACAAAAAATAAAAAAAAATTCAACTTAA
AATAACTTACAAGACTATAAACCATTCAAAGAGAGTAACTAGTCTTTTAAAGGTATGAGTGACTA
TAAATGGACTTTTCTAGTCAATGGATGGCTTTCACTTCAT
Found at i:245558 original size:170 final size:166
Alignment explanation
Indices: 245029--245616 Score: 580
Period size: 169 Copynumber: 3.5 Consensus size: 166
245019 AGCCTTCCAA
* * * *
245029 AGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGACTTTTTCTTCATGTTTCTTGAG
1 AGGCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCATGTTTC-TGAG
* * *
245094 ACAAACATCCAATTATGATCTATTTTAAT-AAAATATAAAAAAATTTC-ACTTAAAATAATTTTT
65 -CAAACATCCAATTATGATCTGTTTTAATAAAAATA-AAAAAAAATTCAACTTAAAATAATTTAT
* * * * * *
245157 AAGATTATAAAACCATTGAGACCTAGTAACTAGTCTTTCAA
128 AAGATTAT-AAACCATTCA-AACGAGTAACTAATCTTTTAG
* * * * * * ** *
245198 AGGTATGAGTGGCTCTAAATAGACTTTTCTTGTCAATGAATGGCTTTCACTTTGCAT-TTCCTGA
1 AGGCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGC-TT-CATGTTTCTGA
* * *
245262 GGCAAACATCCAATTATGATCTGTTTTAACAAAAAATGAAAAAAAA-TCAACTTAAAATCATTTA
64 -GCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAACTTAAAATAATTTA
* * * *
245326 CAAGATTATAAAGCCATTTAAAAGAGTAACT-AGCATTTT-G
127 TAAGATTATAAA-CCATTCAAACGAGTAACTAATC-TTTTAG
* * *
245366 AAGGTATGAGTGACTATAAATGGACTTCTT-TAGTTAATGGATGGCTTTTGCTTCATTTTTCTAG
1 -AGGCATGAGTGACTATAAATGGACTT-TTCTAGTCAATGGATGGCTTTTGCTTCATGTTTCT-G
* *
245430 ATGTAAACATCCAATTATGATCTGTTTTAATGAAAAATAAAAAAAAATTCAACTTAAAATAACTT
63 A-GCAAACATCCAATTATGATCTGTTTTAAT-AAAAATAAAAAAAAATTCAACTTAAAATAATTT
* *
245495 ATAAGACTATAAATCATTCAAAGCGAGTAACTAATCTTTTAG
126 ATAAGATTATAAACCATTCAAA-CGAGTAACTAATCTTTTAG
* * *
245537 AGGCATAAGTGACTATAAATGGACTTTTCTCA-TCAATGGATGGCTTTTGCTCCATGTTTCTTTA
1 AGGCATGAGTGACTATAAATGGACTTTTCT-AGTCAATGGATGGCTTTTGCTTCATGTTTC-TGA
*
245601 GACAAACATCTAATTA
64 G-CAAACATCCAATTA
245617 AAATCTAAAT
Statistics
Matches: 344, Mismatches: 54, Indels: 41
0.78 0.12 0.09
Matches are distributed among these distances:
167 3 0.01
168 7 0.02
169 178 0.52
170 143 0.42
171 13 0.04
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (166 bp):
AGGCATGAGTGACTATAAATGGACTTTTCTAGTCAATGGATGGCTTTTGCTTCATGTTTCTGAGC
AAACATCCAATTATGATCTGTTTTAATAAAAATAAAAAAAAATTCAACTTAAAATAATTTATAAG
ATTATAAACCATTCAAACGAGTAACTAATCTTTTAG
Found at i:246336 original size:171 final size:170
Alignment explanation
Indices: 245625--249118 Score: 2333
Period size: 171 Copynumber: 20.6 Consensus size: 170
245615 TAAAATCTAA
* * * * * *
245625 ATAAGATTTTAAAACTATTTAAAGTGACTAACTAGT-ATTAATAAGACATGAGTGACTATAAATG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCA-AAGGCATGAGTGACTATAAATG
* ** ** * * * *
245689 GATTTTTCTTGTCAATATATGATTTTCGCTTTATGTTTCTTCAAGCG--AACATCTAAGTATGAT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-TCAAG-GAAAACATCCAATTATGAT
* * *
245752 CTATTGTAA-CAAAAA-ATGAAAAAAA-TCAACTTAAAATCATTC
128 CTGTT-TAATCAAAAATA-AAAAAAAATTCAACTTAAAATCATTT
* * * * * * *
245794 ATAAAATTACAAAACCATTTAAAGTGAGTAATTAGGCATTCAAAGGCATG-GATGAGTACAAATG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAG-TGACTATAAATG
* * * * * * * * *
245858 AAATTTTCTTCTTAATTGATGGCTTTTGCTTCACATTT-TCCAATGTAAACAT-CAAGTTATGGT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAAGGAAAACATCCAA-TTAT-G-
* * *
245921 ATGTGTTT-A-C---AA-AAAAAAAAA-TCAATTTAAAGTCATTT
126 ATCTGTTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * * *
245959 TTAA-AGCTATAAAATCACTTAAAATGAGTAACTAAG-CTTTCGAAGGCATGAGTGACTATAAAT
1 ATAAGA-TTATAAAACCATTTAAAGTGAGTAACT-AGTCTTTCAAAGGCATGAGTGACTATAAAT
* * * * * * *
246022 GGACTTTTGTT-ACAAACGGATGGCTTTTGCTTCATG-TTC-CTAGAGACAAAAATCCAATTATG
64 GGACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCAAG-GA-AAACATCCAATTATG
** * *
246084 ATCTGTTT-A--AATGA-ACAAAAAAATTCAACATAAAATCATTT
126 ATCTGTTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * *
246125 ATAAGATTATAAAACTATTTATAGTGAGTAACTAGTCTTTCAAAGGTATGAGTGTCTATAAATGG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* *** * *
246190 ACCTTTT-TTGTCAATGGATGGTTTTCGCTTTGTGTTTCTCAAGGAAAACATTCAATTATGATTT
66 A-CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT
* * * *
246254 GCGTTAATGAGAAATAAAAAAAAATTTAACTTAAAATCATCTT
130 G-TTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCAT-TT
* * * * **
246297 -TAAGATTATAAAACCATTTAAAGCGAGTAATCT-GTCTTTCAAGGGCATTAATGACTATAAACA
1 ATAAGATTATAAAACCATTTAAAGTGAGTAA-CTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * ** *
246360 GACTTTTTTTGTTAATAGATAGCTTTCGCTTCA--TATTCCCAAGGAAAACATCCAAAGATGATT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGT-TTCTCAAGGAAAACATCCAATTATGATC
* * *
246423 TGTTTTAA-CTAAAAATGAAAAAAACATGT-ACCTTAAAATCATCT
129 TG-TTTAATC-AAAAAT-AAAAAAAAAT-TCAACTTAAAATCATTT
* * * * * * * * * *
246467 ACATGATTCTAAAACCATTTAAAGCGAGTAACAAGCCATTCTAAGGCATGAGTGACTTTAAATAG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * * * * * * *
246532 ACTTTTCTTATTAATGGATGGATTTCCCTTTATGTTTCAT-AGGGAAAACATCCAATTATGGTTT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTC-TCAAGGAAAACATCCAATTATGATCT
* * * * * *
246596 GTTTTCA-CAAACAAT-GAAGAAAATTCAGCTTAGAATCATTG
130 G-TTTAATCAAA-AATAAAAAAAAATTCAACTTAAAATCATTT
* * * * **
246637 ATAAGATTCTAAAA-CATTGAAGGTGAGTAACTAGTCTTTCAAAGGCATAAGCAACTATAAATGG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * ** * * * *
246701 A-TATTTCTTATTAATGGAAGATTTTTGCTTCACATTTCCCATGGAAAACATCCAATTATGATCT
66 ACT-TTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT
* * * * *
246765 ATTTTAA-CAAAAAGT-GAAAAAAATCCAACTTAAAGTCAGTT
130 -GTTTAATCAAAAA-TAAAAAAAAATTCAACTTAAAATCATTT
* * * * * * * *
246806 ATAAGATTATAAAATCATTTGAAGTGAGTAATTAGGCTTACCAAGGCATGAATGACTACAAATGG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * * * * *
246871 ACTTTTCTTGTCAATTGATAGCTTTTGCTTCACG-TTCTCCAATGTAAACATCAAATTATGATAT
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCT-CAAGGAAAACATCCAATTATGATCT
*
246935 GTATTAA-CAAAAAT---AAAAAA-TCAATTTAAAATCATTT
130 GT-TTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * ** * * *
246972 TTAA-AGTTGTAAAATCACTTAAAACGAGTAACTAGGCTTTCAAAGGCATAAGTGACTGTAAATG
1 ATAAGA-TTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* * * * * * * * *
247036 GACTTGTGTT-ACAAATAGATAGCTTTCACATCACGTTT-TTAGAGGCAAACATCCAATTATGAT
65 GACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTCTCA-AGGAAAACATCCAATTATGAT
* * * *
247099 CTGTCTAATAAAAAATGATAAAAAAATTCAACTTTAAATCATTT
128 CTGTTTAATCAAAAAT-AAAAAAAAATTCAACTTAAAATCATTT
* * *
247143 ATAAGATTATAAAACCATTT-AAGATGAGTAACTAGTCTTTCAAAGGCATAAGTGTCTATAAATA
1 ATAAGATTATAAAACCATTTAAAG-TGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* ** * * *
247207 GACTTTTCTTGTCAATAGATGGCTTTCGCTTCAC-TTTCTCAAGGACCATATTCAACTATGATCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT
* * * *
247271 ATTTTATCCAAAAAATGAAAGAAAATTCAACTTAAAATCATTT
130 GTTTAAT-C-AAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * ** *
247314 ATAAGATTTTTAAACCATTTAAAGTGACTAACCAGAATTT-AGAAGGCATGAGTGACTATAAATA
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCA-AAGGCATGAGTGACTATAAATG
* * * **
247378 GACTTTTCTTGTCAATGGATGGCTTTCG-TTATATGTTTTTTGAGGCAAAA-ATCCAATTATGAT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTT-CACGTTTCTCAAGG-AAAACATCCAATTATGAT
* * * * * *
247441 ATGTTTCAACCAAAAGTGAAAAAAAATACAGCTTAAAATCATTT
128 CTGTTT-AATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * *
247485 ATAAGATTATAAAACCATTAAAAGCGAGTAACTAGTATTTCGAAGGCATGAGTGGCTATAAATGG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* ** ** * * *
247550 ACTTTTCTAGTCAATAAATGATTTTCACTTCATGCTTCTCAA-GACAAACATCCAATTATGATAC
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGA-AAACATCCAATTATGAT-C
* * * * *
247614 -GTTTTAATTAATAAT-AAAAACAATTCTACTTAAAATTATTT
129 TG-TTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * * * *
247655 ATAAGAGTAT-AAATCATTCAGAGTGAGTAACTAGCCTTTCAAAGGCATAAGTGACTATAAATAG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * * * * *
247719 ACTTTTTTTTGTCAATGAATGGCTTTCACTTCACATTTCTCAA-GACAAGCATTCAATTATGATT
66 AC-TTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGA-AAACATCCAATTATGATC
** * *
247783 TGTTTAGCCAAAAATGAAGAAAAGATTCAACTTAAAATCATTT
129 TGTTTAATCAAAAAT-AAAAAAAAATTCAACTTAAAATCATTT
* * * * * *
247826 ATAAGAGTAT-AAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGATTCTAAATAG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * * ** * * ** *
247890 ACTTTTCTTATCAATTGATAGCTTTCAATTCACCTTGCTTGAGGCAAACATCCAATTATGATCTG
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCTG
*** * *
247955 TTTTGCCCAAATATGAAAAAAAATTCAACTTAAAATCATTT
131 -TTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * ** * * *
247996 AT-AGTATTATAAAACTATTGAAAGCAAGCAACTAGGCTTTCAAAGGCATGAGTGATTATAAATG
1 ATAAG-ATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* ** * * ** * * *
248060 GACTTTTCTTAT-TGTGGATGGCTTTCACTTCACGTTTTTTTAGGTAAACATCTAATTATCATCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT
* * * * *
248124 GTTTGATCAAAAAGTGAAAAACAATTCAACTTAAAATAATTA
130 GTTTAATCAAAAA-TAAAAAAAAATTCAACTTAAAATCATTT
* * * * *
248166 ATAAGATTGTAAAACTATTGAAAGCGAGTAACTAGTCTTTCAAAGG-ATGAGT-AGCTAGAAATG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGA-CTATAAATG
* * * ** * * * * ***
248229 GACTTTTATTATTAATGGATGGCTTTTACTTCATGTTTCCCAAGGCAAGCATCCAATTGCAATCT
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT
*
248294 GTTTTAA-CTAAAAATAAAAAAAAGTTTCAACTTAAAATCATTT
130 G-TTTAATC-AAAAATAAAAAAAA-ATTCAACTTAAAATCATTT
* * ** * * * * *
248337 ATAAGATTATAAAACTATTTAGAGAAAGTAATTAGT-TTTGTAAAGGCATGAATGATTGTAAATG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTT-CAAAGGCATGAGTGACTATAAATG
* * ** * * * * * *
248401 GACTTTCCATGTCAATTCATTGCTTTTGAC-TCACCTTTC-CTGAGGCAAGCATCCAATTATGAT
65 GACTTTTCTTGTCAATGGATGGCTTTCG-CTTCACGTTTCTC-AAGGAAAACATCCAATTATGAT
* * * * *
248464 ATGTTTTGACCAAAAATGAAAAAACAAATTTAACTTAAAATTATTT
128 CTG-TTTAATCAAAAAT-AAAAAA-AAATTCAACTTAAAATCATTT
* * * * *
248510 ATAAGATTATAAAACCGTTAAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGAGGCTATAAATAG
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
* * ** * * * *
248575 ACTTTTCTTATCTATTTATGGCTTTTGCTTCACATTTCTCCAGGAAAACATCCAATTATAATCTC
66 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCT-
* **
248640 TTTTAA-CTAAAAATCAAAAAAAGCTTCAACTTAAAATCATTT
130 GTTTAATC-AAAAAT-AAAAAAAAATTCAACTTAAAATCATTT
* * * * ** *
248682 ATAAGATTATAAAACTATTTAGAGCGAGTAACTAGTATTTTGAAGGCATGAGTGGCCATATAAAT
1 ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGT-GAC-TATAAAT
* * * * * *
248747 GGACTTTTCTTATCAATGGATGGCTTTCAC-TAAGCATTTC-CTAAGGCAAACATCTAATTATGA
64 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCA-CGTTTCTC-AAGGAAAACATCCAATTATGA
* *
248810 TTTGTTTTAA-CTAAAAAT--AAAAAAATTTAACTTAAAATCATTT
127 TCTG-TTTAATC-AAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * *
248853 ATAAGACTATAAATA--ATTCAAAGTGAGTAACTAG-CTTTTCGAAGGCATGAGTGACTATAAAT
1 ATAAGATTATAAA-ACCATTTAAAGTGAGTAACTAGTC-TTTCAAAGGCATGAGTGACTATAAAT
* * * * * * * * *
248915 GGACTTTTTTTATCAAAGGATGGGTTTTGCTTTATGTTTC-CTAGGACAAACATCTAATTATGAT
64 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGA-AAACATCCAATTATGAT
* * *
248979 CTATTTTAA-CTAAAAA-AGAAAAGAATTCAACTTAAAATCATTT
128 CT-GTTTAATC-AAAAATAAAAAAAAATTCAACTTAAAATCATTT
* * * * * * * *
249022 ATAAAATTATAAAACTATTTGAAA-CGAGTAATTAGGCTTTCAAAGGCATGAATTACTATAAGTG
1 ATAAGATTATAAAACCATTT-AAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATG
* * * *
249086 GACTTTTTTTGTCAATTGATAGCTTTCACTTCA
65 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCA
249119 TATTTTCTAA
Statistics
Matches: 2624, Mismatches: 576, Indels: 249
0.76 0.17 0.07
Matches are distributed among these distances:
163 10 0.00
164 5 0.00
165 118 0.04
166 226 0.09
167 27 0.01
168 82 0.03
169 346 0.13
170 614 0.23
171 767 0.29
172 209 0.08
173 145 0.06
174 75 0.03
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (170 bp):
ATAAGATTATAAAACCATTTAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGTGACTATAAATGG
ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTCTCAAGGAAAACATCCAATTATGATCTG
TTTAATCAAAAATAAAAAAAAATTCAACTTAAAATCATTT
Found at i:246787 original size:511 final size:508
Alignment explanation
Indices: 245736--249092 Score: 2244
Period size: 511 Copynumber: 6.6 Consensus size: 508
245726 TCTTCAAGCG
* * * *
245736 AACATCTAAGTATGATCTATTGTA-ACAAAAAATG-AAAAAAA-TCAACTTAAAATCATTCATAA
1 AACATCCAATTATGATCTATTTTAGAC-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * * *
245798 AATTACAAAACCATTTAAAGTGAGTAATTAGGCATTCAAAGGCATGGATGAGTACAAAT-GAAAT
65 GATTATAAAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGACTATAAATAG-ACT
* * * * * * * * *
245862 TTTCTTCTTAATTGATGGCTTTTGCTTCACATTTTCCAATGTAAACAT-CAAGTTATGGTATGTG
129 TTTCTTGTCAATTGATAGCTTTCGCTTCACA-TTCCCAAGGAAAACATCCAA-ATATGATATGT-
* * * * * *
245926 TTT-A-CAAAAA--AAAAAATCAA-T--TTAAAGTCATTTTTAA-AGCTATAAAATCACTTAAAA
191 TTTAACCAAAAATGAAAAAA--AATTACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAG
* * * * * * ** ** *
245983 TGAGTAACTAAGCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTGTTACAAACGGATGGCTT
253 CGAGTAACTAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTATTAATAGATGGATT
** * * * ** *
246048 TTGCTTCATG--TTCCTAGAGACAAAAATCCAATTATGATCTG-TTTAA-ATGAA-CAAAAA-AA
318 TCACTTCACGCTTTCATAG-GA-AAACATCCAATTATGATCTGTTTTAATAAAAATGAAAAACAA
* *
246107 TTCAACATAAAATCATTTATAAGATTATAAAACTATTTATA-GTGAGTAACTAGTCTTTCAAAGG
381 TTCAACTTAAAATCATTTATAAGATTATAAAAC-ATTGA-AGGTGAGTAACTAGTCTTTCAAAGG
* * ** * * * * * **** *
246171 TATGAGTGTCTATAAATGGACCTTTT-TTGTCAATGGATGGTTTTCGCTTTGTGTTTCTCAAGGA
444 CATAAGTAACTATAAATAGA-CTTTTCTTATCAATGGAAGGCTTTCACTTCACATTTCCCAAGGA
246235 A
508 A
* * *** * * * *
246236 AACATTCAATTATGATTTGCGTTA-ATGAGAAATAAAAAAAAATTTAACTTAAAATCATCTT-TA
1 AACATCCAATTATGATCTATTTTAGA-CAAAAATGAAAAAAAATTCAACTTAAAATCAT-TTATA
* * * *
246299 AGATTATAAAACCATTTAAAGCGAGTAATCT-GTCTTTCAAGGGCATTAATGACTATAAACAGAC
64 AGATTATAAAACCATTTAAAGTGAGTAAT-TAGTCTTTCAAAGGCATGAATGACTATAAATAGAC
* * * * * *
246363 TTTTTTTGTTAATAGATAGCTTTCGCTTCATATTCCCAAGGAAAACATCCAAAGATGATTTGTTT
128 TTTTCTTGTCAATTGATAGCTTTCGCTTCACATTCCCAAGGAAAACATCCAAATATGATATGTTT
* * * * *
246428 TAACTAAAAATGAAAAAAACATGTACCTTAAAATCATCTACATGATTCTAAAACCATTTAAAGCG
193 TAACCAAAAATGAAAAAAA-AT-TA-CTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCG
* * * * *
246493 AGTAACAAGCCATTCTAAGGCATGAGTGACTTTAAATAGACTTTTCTTATTAATGGATGGATTTC
255 AGTAACTAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTATTAATAGATGGATTTC
* * * * * * * *
246558 CCTTTATG-TTTCATAGGGAAAACATCCAATTATGGTTTGTTTTCACAAACAATGAAGAA-AATT
320 ACTTCACGCTTTCATA-GGAAAACATCCAATTATGATCTGTTTTAATAAA-AATGAAAAACAATT
* * * *
246621 CAGCTTAGAATCATTGATAAGATTCTAAAACATTGAAGGTGAGTAACTAGTCTTTCAAAGGCATA
383 CAACTTAAAATCATTTATAAGATTATAAAACATTGAAGGTGAGTAACTAGTCTTTCAAAGGCATA
* * * ** ** *
246686 AGCAACTATAAATGGA-TATTTCTTATTAATGGAAGATTTTTGCTTCACATTTCCCATGGAA
448 AGTAACTATAAATAGACT-TTTCTTATCAATGGAAGGCTTTCACTTCACATTTCCCAAGGAA
* * *
246747 AACATCCAATTATGATCTATTTTA-ACAAAAAGTG-AAAAAAATCCAACTTAAAGTCAGTTATAA
1 AACATCCAATTATGATCTATTTTAGACAAAAA-TGAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * * *
246810 GATTATAAAATCATTTGAAGTGAGTAATTAGGCTTACCAAGGCATGAATGACTACAAATGGACTT
65 GATTATAAAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGACTATAAATAGACTT
* * * * *
246875 TTCTTGTCAATTGATAGCTTTTGCTTCACGTTCTCCAATGTAAACAT-CAAATTATGATATGTAT
130 TTCTTGTCAATTGATAGCTTTCGCTTCACATTC-CCAAGGAAAACATCCAAA-TATGATATGTTT
* * * * *
246939 TAA-CAAAAAT-AAAAAATCAA-T--TTAAAATCATTTTTAA-AGTTGTAAAATCACTTAAAACG
193 TAACCAAAAATGAAAAAA--AATTACTTAAAATCATTTATAAGA-TTATAAAACCATTTAAAGCG
* * * * * ** * *
246998 AGTAACTAGGCTTTCAAAGGCATAAGTGACTGTAAATGGACTTGTGTTACAAATAGATAGCTTTC
255 AGTAACTAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTATTAATAGATGGATTTC
* * * * * * *
247063 ACATCACGTTTTTAGAGGCAAACATCCAATTATGATCTG-TCTAATAAAAAATGATAAAAAAATT
320 ACTTCACGCTTTCATAGGAAAACATCCAATTATGATCTGTTTTAAT-AAAAATGA-AAAACAATT
* * *
247127 CAACTTTAAATCATTTATAAGATTATAAAACCATTTAAGATGAGTAACTAGTCTTTCAAAGGCAT
383 CAACTTAAAATCATTTATAAGATTATAAAA-CATTGAAGGTGAGTAACTAGTCTTTCAAAGGCAT
** * * * * * *
247192 AAGTGTCTATAAATAGACTTTTCTTGTCAATAGATGGCTTTCGCTTCAC-TTTCTCAAGGAC
447 AAGTAACTATAAATAGACTTTTCTTATCAATGGAAGGCTTTCACTTCACATTTCCCAAGGAA
* * * * ** *
247253 CATATTCAACTATGATCTATTTTATCCAAAAAATGAAAGAAAATTCAACTTAAAATCATTTATAA
1 AACATCCAATTATGATCTATTTTAGAC-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAA
* * * ** ** *
247318 GATTTTTAAACCATTTAAAGTGACTAACCAGAATTT-AGAAGGCATGAGTGACTATAAATAGACT
65 GATTATAAAACCATTTAAAGTGAGTAATTAGTCTTTCA-AAGGCATGAATGACTATAAATAGACT
* * * **** *
247382 TTTCTTGTCAATGGATGGCTTTCG-TT-ATATGTTTTTTGAGGCAAAA-ATCCAATTATGATATG
129 TTTCTTGTCAATTGATAGCTTTCGCTTCACA---TTCCCAAGG-AAAACATCCAAATATGATATG
* * * *
247444 TTTCAACCAAAAGTGAAAAAAAATACAGCTTAAAATCATTTATAAGATTATAAAACCATTAAAAG
190 TTTTAACCAAAAATGAAAAAAAAT-TA-CTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * * * *
247509 CGAGTAACTA-GTATTTCGAAGGCATGAGTGGCTATAAATGGACTTTTC-TAGTCAATAAAT-GA
253 CGAGTAACTAGGCA-TTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTA-TTAATAGATGGA
* *
247571 TTTTCACTTCATGCTTCTCA-A-GACAAACATCCAATTATGATAC-GTTTTAATTAATAAT-AAA
316 -TTTCACTTCACGCTT-TCATAGGA-AAACATCCAATTATGAT-CTGTTTTAA-TAAAAATGAAA
* * * * * *
247632 AACAATTCTACTTAAAATTATTTATAAGAGTATAAATCATT-CAGAGTGAGTAACTAGCCTTTCA
376 AACAATTCAACTTAAAATCATTTATAAGATTATAAAACATTGAAG-GTGAGTAACTAGTCTTTCA
* * * *
247696 AAGGCATAAGTGACTATAAATAGACTTTTTTTTGTCAAT-GAATGGCTTTCACTTCACATTTCTC
440 AAGGCATAAGTAACTATAAATAGAC-TTTTCTTATCAATGGAA-GGCTTTCACTTCACATTTCCC
247760 AA-GACA
503 AAGGA-A
* * * *
247766 AGCATTCAATTATGAT-T-TGTTTAGCCAAAAATGAAGAAAAGATTCAACTTAAAATCATTTATA
1 AACATCCAATTATGATCTAT-TTTAGACAAAAATGAA-AAAAAATTCAACTTAAAATCATTTATA
* * *
247829 AGAGTAT-AAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGATTCTAAATAGACT
64 AGATTATAAAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGACTATAAATAGACT
* ** * *** * * *
247893 TTTCTTATCAATTGATAGCTTTCAATTCACCTTGCTTGAGGCAAACATCCAATTATGATCTGTTT
129 TTTCTTGTCAATTGATAGCTTTCGCTTCACATT-CCCAAGGAAAACATCCAAATATGATATGTTT
** * * * *
247958 TGCCCAAATATGAAAAAAAATTCAACTTAAAATCATTTAT-AGTATTATAAAACTATTGAAAGCA
193 TAACCAAAAATGAAAAAAAATT--ACTTAAAATCATTTATAAG-ATTATAAAACCATTTAAAGCG
* * * * *
248022 AGCAACTAGGCTTTCAAAGGCATGAGTGA-TTATAAATGGACTTTTCTTATT-GTGGATGGCTTT
255 AGTAACTAGGCATTCAAAGGCATGAGTGACTT-TAAATGGACTTTTCTTATTAATAGATGGATTT
* ** * * * *
248085 CACTTCACGTTTTTTTAGGTAAACATCTAATTATCATCTG-TTTGATCAAAAAGTGAAAAACAAT
319 CACTTCACGCTTTCATAGGAAAACATCCAATTATGATCTGTTTTAAT-AAAAA-TGAAAAACAAT
* * * * *
248149 TCAACTTAAAATAATTAATAAGATTGTAAAACTATTGAAAGCGAGTAACTAGTCTTTCAAAGG-A
382 TCAACTTAAAATCATTTATAAGATTATAAAAC-ATTGAAGGTGAGTAACTAGTCTTTCAAAGGCA
* * * * * * * * ** *
248213 TGAGTAGCTAGAAATGGACTTTTATTATTAATGGATGGCTTTTACTTCATGTTTCCCAAGGCA
446 TAAGTAACTATAAATAGACTTTTCTTATCAATGGAAGGCTTTCACTTCACATTTCCCAAGGAA
* *** *
248276 AGCATCCAATTGCAATCTGTTTTA-ACTAAAAAT-AAAAAAAAGTTTCAACTTAAAATCATTTAT
1 AACATCCAATTATGATCTATTTTAGAC-AAAAATGAAAAAAAA--TTCAACTTAAAATCATTTAT
* * ** * * * *
248339 AAGATTATAAAACTATTTAGAGAAAGTAATTAGT-TTTGTAAAGGCATGAATGATTGTAAATGGA
63 AAGATTATAAAACCATTTAAAGTGAGTAATTAGTCTTT-CAAAGGCATGAATGACTATAAATAGA
* * * * * * ** * * *
248403 CTTTCCATGTCAATTCATTGCTTTTGAC-TCACCTTTCCTGAGGCAAGCATCCAATTATGATATG
127 CTTTTCTTGTCAATTGATAGCTTTCG-CTTCA-CATTCCCAAGGAAAACATCCAAATATGATATG
* * * *
248467 TTTTGACCAAAAATGAAAAAACAAATTTAACTTAAAATTATTTATAAGATTATAAAACCGTTAAA
190 TTTTAACCAAAAATG-AAAAA-AAA-TT-ACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * * * * * **
248532 AGTGAGTAACTAGTCTTTCAAAGGCATGAGAGGCTATAAATAGACTTTTCTTATCT-ATTTATGG
251 AGCGAGTAACTAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTAT-TAATAGATGG
* ** * * * *
248596 CTTTTGCTTCAC-ATTTC-TCCAGGAAAACATCCAATTATAATCTCTTTTAACTAAAAATCAAAA
315 ATTTCACTTCACGCTTTCAT--AGGAAAACATCCAATTATGATCTGTTTTAA-TAAAAATGAAAA
* * *
248659 A-AAGCTTCAACTTAAAATCATTTATAAGATTATAAAACTATT-TAGAGCGAGTAACTAGTATTT
377 ACAA--TTCAACTTAAAATCATTTATAAGATTATAAAAC-ATTGAAG-GTGAGTAACTAGTCTTT
** * ** * * *
248722 TGAAGGCATGAGTGGCCATATAAATGGACTTTTCTTATCAATGGATGGCTTTCAC-TAAGCATTT
438 CAAAGGCATAAGT-AAC-TATAAATAGACTTTTCTTATCAATGGAAGGCTTTCACTTCA-CATTT
* *
248786 CCTAAGGCA
500 CCCAAGGAA
* * * *
248795 AACATCTAATTATGATTTGTTTTA-ACTAAAAAT--AAAAAAATTTAACTTAAAATCATTTATAA
1 AACATCCAATTATGATCTATTTTAGAC-AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAA
* * * * * *
248857 GACTATAAATA--ATTCAAAGTGAGTAACTAG-CTTTTCGAAGGCATGAGTGACTATAAATGGAC
65 GATTATAAA-ACCATTTAAAGTGAGTAATTAGTC-TTTCAAAGGCATGAATGACTATAAATAGAC
* * ** * * * * ** * * * * * *
248919 TTTTTTTATCAAAGGATGGGTTTTGCTTTATGTTTCCTAGGACAAACATCTAATTATGATCTATT
128 TTTTCTTGTCAATTGATAGCTTTCGCTTCACATTCCCAAGGA-AAACATCCAAATATGATATGTT
* * * * *
248984 TTAACTAAAAAAG-AAAAGAATTCAACTTAAAATCATTTATAAAATTATAAAACTATTTGAAA-C
192 TTAACCAAAAATGAAAAAAAATT--ACTTAAAATCATTTATAAGATTATAAAACCATTT-AAAGC
* * * * * *
249047 GAGTAATTAGGCTTTCAAAGGCATGAATTACTATAAGTGGACTTTT
254 GAGTAACTAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTT
249093 TTTGTCAATT
Statistics
Matches: 2258, Mismatches: 471, Indels: 244
0.76 0.16 0.08
Matches are distributed among these distances:
500 25 0.01
501 28 0.01
502 99 0.04
503 4 0.00
504 15 0.01
505 110 0.05
506 64 0.03
507 73 0.03
508 222 0.10
509 51 0.02
510 217 0.10
511 449 0.20
512 342 0.15
513 142 0.06
514 102 0.05
515 131 0.06
516 95 0.04
517 8 0.00
518 10 0.00
519 71 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (508 bp):
AACATCCAATTATGATCTATTTTAGACAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAG
ATTATAAAACCATTTAAAGTGAGTAATTAGTCTTTCAAAGGCATGAATGACTATAAATAGACTTT
TCTTGTCAATTGATAGCTTTCGCTTCACATTCCCAAGGAAAACATCCAAATATGATATGTTTTAA
CCAAAAATGAAAAAAAATTACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGCGAGTAAC
TAGGCATTCAAAGGCATGAGTGACTTTAAATGGACTTTTCTTATTAATAGATGGATTTCACTTCA
CGCTTTCATAGGAAAACATCCAATTATGATCTGTTTTAATAAAAATGAAAAACAATTCAACTTAA
AATCATTTATAAGATTATAAAACATTGAAGGTGAGTAACTAGTCTTTCAAAGGCATAAGTAACTA
TAAATAGACTTTTCTTATCAATGGAAGGCTTTCACTTCACATTTCCCAAGGAA
Found at i:249550 original size:457 final size:453
Alignment explanation
Indices: 248742--249575 Score: 1012
Period size: 457 Copynumber: 1.8 Consensus size: 453
248732 AGTGGCCATA
* * *
248742 TAAATGGACTTTTCTTATCAATGGATGGCTTTCACTAAGCATTTCCTAAGGCAAACATCTAATTA
1 TAAATGGACTTTTCTTATAAATAGATGGCTTTCACTAAGCATTTCCTAAGGCAAACATCCAATTA
* *
248807 TGATTTGTTTTAACTAAAAATAAAAAAATTTAACTTAAAATCATTTATAAGACTATAAATAATTC
66 TGATTTGTTTTAACTAAAAAGAAAAAAATTCAACTTAAAATCATTTATAAGACTATAAATAATTC
* *
248872 AAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTTTTATCAAAGGATG
131 AAAGTCAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTATCAAAGGATG
** * *
248937 GGTTTTGCTTTATGTTTCCTAGGACAAACATCTAATTATGATCTATTTTAACTAAAAAAGAAAAG
196 ACTTTTGCTTTACGTTTCCTAGGACAAACATCTAATTATGATCTATTTTAACTAAAAAAGAAAAA
* * * * ** *
249002 AATTCAACTTAAAATCATTTATAAAATTATAAAACTATTTGAAACGAGTAATTAGGCTTTCAAAG
261 AATTCAACTTAAAATCATGTACAAAATTATAAAACCATTTAAAACGAGTAACAAGCCTTTCAAAG
* *
249067 GCATGAATTACTATAAGTGGACTTTTTTTGTCAATTGATAGCTTTCACTTCATATTTTCTAATGT
326 GCATGAATAACTATAAGTGGACTTTTTTT-TCAATAGATAGCTTTCACTTCATATTTTCTAATGT
249132 AAACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAGTAATTG
390 AAACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAGTAATTG
*
249196 TAAATGGACTTTTCTTGTAAATAGATGGCTTTCACTACA-CATTT-CTCAAGGCAAACATCCAAT
1 TAAATGGACTTTTCTTATAAATAGATGGCTTTCACTA-AGCATTTCCT-AAGGCAAACATCCAAT
* *
249259 TATGATTTGTTTTAA-TGAAAAAAGAAAAAGAATTCAACTTAAAATCATTTATAAGATTGTAAA-
64 TATGATTTGTTTTAACT--AAAAAGAAAAA-AATTCAACTTAAAATCATTTATAAGACTATAAAT
* * * * *
249322 ACCTTTTAAAGTCAGTAACTTG-TCTTTC-AAGGGCATTAGTGACTATAAATGGACTTTTATTGT
126 A--ATTCAAAGTCAGTAACTAGCT-TTTCGAA-GGCATGAGTGACTATAAATGGACTTTTATTAT
* ** * * * * *
249385 CAATGGATGACTTTTGCTTTACGTTTTTTGGGGCAAACATC-CATTGATGATTTGTTTTAAAC-A
187 CAAAGGATGACTTTTGCTTTACGTTTCCTAGGACAAACATCTAATT-ATGATCTATTTT-AACTA
* *** * *
249448 AAAATA-AAAAAAATTTAACTTAAAATCATGTACGTTATTCTACAACCA-TTAAAA-GCAGGTAA
250 AAAA-AGAAAAAAATTCAACTTAAAATCATGTACAAAATTATAAAACCATTTAAAACG-A-GTAA
* *
249510 CAAGCCATTTGAAA-GCAT-AAGTAACTATGAA-TGGACTTTTTTTTGAATAGATAGCTTTCACT
312 CAAGCC-TTTCAAAGGCATGAA-TAACTAT-AAGTGGACTTTTTTTTCAATAGATAGCTTTCACT
249572 TCAT
374 TCAT
249576 GTTTCCCAAG
Statistics
Matches: 319, Mismatches: 44, Indels: 32
0.81 0.11 0.08
Matches are distributed among these distances:
453 3 0.01
454 69 0.22
455 13 0.04
456 65 0.20
457 157 0.49
458 12 0.04
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (453 bp):
TAAATGGACTTTTCTTATAAATAGATGGCTTTCACTAAGCATTTCCTAAGGCAAACATCCAATTA
TGATTTGTTTTAACTAAAAAGAAAAAAATTCAACTTAAAATCATTTATAAGACTATAAATAATTC
AAAGTCAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTATTATCAAAGGATG
ACTTTTGCTTTACGTTTCCTAGGACAAACATCTAATTATGATCTATTTTAACTAAAAAAGAAAAA
AATTCAACTTAAAATCATGTACAAAATTATAAAACCATTTAAAACGAGTAACAAGCCTTTCAAAG
GCATGAATAACTATAAGTGGACTTTTTTTTCAATAGATAGCTTTCACTTCATATTTTCTAATGTA
AACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAGTAATTG
Found at i:249720 original size:169 final size:169
Alignment explanation
Indices: 249161--251297 Score: 1401
Period size: 172 Copynumber: 12.6 Consensus size: 169
249151 TAATTTTAGG
* * * * * *
249161 GCGAGTAACCAGGCTTTTGAAGGCATGAGTAATTGTAAATG-GACTTTTCTTGTAAATAGATGGC
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAA-GAGACTTTTCTTGTCAATAGATGGC
* * * * * *
249225 TTTCACTACACATTTCTCAAGGCAAACATCCAATTATGATTTGTTTTAATGAAAAAAGAAAAAGA
65 TTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAA-A
*
249290 ATTCAACTTAAAATCATTTATAAGAT-TGTAAAACCTTTTAAA
129 ATTCAACTTAAAATCATTTATAAGATAT-TAAAA-CATTTAAA
* * * * *
249332 GTC-AGTAACTTGTC-TTTCAAGGGCATTAGTGACTATAAATG-GACTTTTATTGTCAATGGATG
1 G-CGAGTAACTAGTCTTTTGAA-GGCATGAGTGACTATAAA-GAGACTTTTCTTGTCAATAGATG
* * * ***** * *
249394 ACTTTTGCTTTACGTTTTTTGGGGCAAACATCC-ATTGATGATTTGTTTTAAACAAAAATAAAAA
63 GCTTTCGCTTCACGTTTCCCAAGGCAAACATCCAATT-ATGATTTGTTTTAATCAAAAATGAAAA
* * * * * *
249458 AAATTTAACTTAAAATCA--TGTACGTTATTCTACAACCATTAAAA
127 AAATTCAACTTAAAATCATTTATAAGATA-T-TA-AAACATTTAAA
* * * * * * * * * *
249502 GC-AGGTAACAAGCCATTTGAAAGCATAAGTAACTATGAATG-GACTTTT-TTTTGAATAGATAG
1 GCGA-GTAACTAGTCTTTTGAAGGCATGAGTGACTAT-AAAGAGACTTTTCTTGTCAATAGATGG
* * * * *
249564 CTTTCACTTCATGTTTCCCAAGGCAAAGAACCAATTATGATTTGTTTTAATCAAAAATGAAAATA
64 CTTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAAA
* *
249629 ATTCAACTTAAAATCATTTATAAGGTATTAAAACATTGAAA
129 ATTCAACTTAAAATCATTTATAAGATATTAAAACATTTAAA
** *
249670 GCGAGTAACTAGTCTTTTGAACTCATGAGTGACTATAAAGAGACCTTTT-TTGTTAATAGATGGC
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGA-CTTTTCTTGTCAATAGATGGC
* * * * * * * * * *
249734 TTTTGCTTCACATTTCCCGAGGTAAACATACAAATATGATCTATATTAAT---GAA--AAAAAAA
65 TTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAAAA
* * * *
249794 -TCAACTT-AAATCATCTATAAGACTA-TAAATCACTCAAA
130 TTCAACTTAAAATCATTTATAAGA-TATTAAAACATTTAAA
* * * * * *
249832 GCGAGTAACTAGCCTGTTGAAGGCATGAGTGACTATAAATAGACTTTTCATATCAATAAATGGCT
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGACTTTTCTTGTCAATAGATGGCT
* * * * * ** *
249897 TTCGCTTCATGTTT-CCTAGGAAAAACATCCAATTATGATATCTTTTAGCCAACAATGAAAAAAA
66 TTCGCTTCACGTTTCCCAAGG-CAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAAAA
* * *
249961 TGTTCAACTGAAAATCATTTGTAAGAT-TGTAAGACCATTTAAA
130 --TTCAACTTAAAATCATTTATAAGATAT-TAA-AACATTTAAA
* * * * * **
250004 GCGAGCAACTTGTC-TTTCAAGGGCATGAGTGACTATAAATAGACTTTTATTGTCAATAGATGAT
1 GCGAGTAACTAGTCTTTTGAA-GGCATGAGTGACTATAAAGAGACTTTTCTTGTCAATAGATGGC
* * * * * * *
250068 TTTCACTTCATGTTTTCTAGGGCAAACAT-CAATTGATGATTTGTTTTAACCAAAAATAAAAAAA
65 TTTCGCTTCACGTTTCCCAAGGCAAACATCCAATT-ATGATTTGTTTTAATCAAAAAT--GAAAA
* * ** * *
250132 AAATTCAACTTAAAATCATCTACATTAT-TTGAAACCCATTAAAA
127 AAATTCAACTTAAAATCATTTATAAGATATT-AAA-ACATTTAAA
* * ** ** * * * *
250176 GCGGGTAACAAG-CTATTCCAAGGCACAAGTGACTACAAATAGACTTTTCTT-TCTAATAGTTAG
1 GCGAGTAACTAGTCT-TTTGAAGGCATGAGTGACTATAAAGAGACTTTTCTTGTC-AATAGATGG
* * * * * *
250239 CTTTTGCTTCACGTTTCCCAAGGAAAACATCTAATTGTGATATATTTTAA-CAAAAAATGAAAAA
64 CTTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATC-AAAAATGAAAAA
* * * *
250303 AATTTAACTTAAAATCATTTATAAGGTACTAAAACATTGAAA
128 AATTCAACTTAAAATCATTTATAAGATATTAAAACATTTAAA
* ** *
250345 GCGAGTAACTAGTCTTTTGAAGTCATGAGTGACTATAATTAGACTTTTCTTATCAATAGATGGCT
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGACTTTTCTTGTCAATAGATGGCT
** * * * * * *
250410 TTTACTTCATGTTTCTCAAGACAAACATCCAATTATAATCTGTATTAA-CAAAAAAT-AGAAAAA
66 TTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATC-AAAAATGA-AAAAA
* * * *
250473 A-TCAACTTAAAATCATTTATGAGACTA-TAAATCACTCAAA
129 ATTCAACTTAAAATCATTTATAAGA-TATTAAAACATTTAAA
* * * * * * * *
250513 ACAAGTAACTAGCCTTTTAAAGGCATGGGTAACTATAAATG-GA-TCTTTCTTGTCACTGGATGG
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAA-GAGACT-TTTCTTGTCAATAGATGG
* * ** * * * *
250576 CTTTTGCTTCACATTTTTCAAGACAAATATCAAATTATGATTTATTTT-ATCCAAAAATGACAAA
64 CTTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAAT-CAAAAATGA-AAA
**
250640 AGGGTTCAACTTAAAATCATTTATAAGAT-TATAAAACCATTTAAA
127 A-AATTCAACTTAAAATCATTTATAAGATAT-TAAAA-CATTTAAA
* * * * * * * * *
250685 GCAAGTAACTAGTATTCTGAAGGTATAAATGGCTATAAATG-GACTTTTCTTGTCAATGGATGGT
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAA-GAGACTTTTCTTGTCAATAGATGGC
* * * * * *
250749 TTTCGCATCACGTTT-CTAGAGGCAAA-AACCAATTATGATATGTTGTAACCAAAAATGAAAAAA
65 TTTCGCTTCACGTTTCCCA-AGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAAA
* * * *
250812 ATTTAACCTAAAATCATTTACAAGAT-TATAACACCATTTAAA
129 ATTCAACTTAAAATCATTTATAAGATAT-TAA-AACATTTAAA
** * * * *
250854 GTAAGTAAGTAGTATTTCGAAGGCATGAGTGACTATAAATG-GACTTTTCTTGTCAATGGATGGC
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAA-GAGACTTTTCTTGTCAATAGATGGC
* * * *
250918 TTTCACTTCAAGTTTCCCAAGGCAAACATCCAATGATGATTTGTTTTAACCAAAAATGAAAAAAA
65 TTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATG-AAAAAA
* * * *
250983 ATTTAATTTAAAATCATTCATAAGAT-TATAAAACCATTTCAA
129 ATTCAACTTAAAATCATTTATAAGATAT-TAAAA-CATTTAAA
* * * * * * ** * * * *
251025 GTGATTAACTAGTTTTTTGAAGCCATGAGTGGCCATAAATTGACTTTTTTTTATCAATGGATTGC
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGAC-TTTTCTTGTCAATAGATGGC
* * * * * * * * *
251090 TGTTTG-TTCATGTTTCCTAAGGTAAATATCCAATTACGATCTGTTGTAACTGAAAAA-GAAAAA
65 T-TTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAA-TCAAAAATG-AAAA
* * * *
251153 AAAGTCAACTTAAAGTCATTTATAAGATTTTAAAACATTGAAA
127 AAATTCAACTTAAAATCATTTATAAGATATTAAAACATTTAAA
* * * * * * ** *
251196 ACAAGTAACTAGTCTTTTGAAGGTATGAGCGACTATAAATAGACTTTTTTTTGTCAACGGATGAC
1 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGAC-TTTTCTTGTCAATAGATGGC
* * * * * * *
251261 TTTCACTTTACATTTTCCATGGAAAACATTCAATTAT
65 TTTCGCTTCACGTTTCCCAAGGCAAACATCCAATTAT
251298 AAGATCATTT
Statistics
Matches: 1539, Mismatches: 356, Indels: 142
0.76 0.17 0.07
Matches are distributed among these distances:
161 10 0.01
162 104 0.07
163 9 0.01
164 6 0.00
165 2 0.00
166 2 0.00
167 12 0.01
168 166 0.11
169 353 0.23
170 143 0.09
171 340 0.22
172 364 0.24
173 21 0.01
174 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAAGAGACTTTTCTTGTCAATAGATGGCT
TTCGCTTCACGTTTCCCAAGGCAAACATCCAATTATGATTTGTTTTAATCAAAAATGAAAAAAAT
TCAACTTAAAATCATTTATAAGATATTAAAACATTTAAA
Found at i:249761 original size:625 final size:627
Alignment explanation
Indices: 248605--249762 Score: 1296
Period size: 625 Copynumber: 1.8 Consensus size: 627
248595 GCTTTTGCTT
* *
248605 CACATTTCTCCAGGAAAACATCCAATTATAATCTCTTTTAACTAAAAATCAAAAAAAGCTTCAAC
1 CACATTTCTCAAGGAAAACATCCAATTATAATCTCTTTTAACTAAAAA-CAAAAAAAGATTCAAC
* * *
248670 TTAAAATCATTTATAAGATTATAAAACTATTTAGAGCGAGTAACTAGTATTTTGAAGGCATGAGT
65 TTAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAACTAGTACTTTCAAGGCATGAGT
* * *
248735 GGCCATATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTAAGCATTTCCTAAGGCAAACAT
130 GGACATATAAATGGACTTTTATTATCAATGGATGACTTTCACTAAGCATTTCCTAAGGCAAACAT
*
248800 CTAATTATGATTTGTTTTAACTAAAAATAAAAAAATTTAACTTAAAATCATTTATAAGACTATAA
195 CTAATTATGATTTGTTTTAACTAAAAATAAAAAAATTTAACTTAAAATCATGTATAAGACTATAA
* * * * * * * *
248865 ATAATTCAAAGTGAGTAACTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTTTTATCA
260 ACAATTAAAAGAGAGTAACAAGCATTTCGAAAGCATAAGTAACTATAAATGGACTTTTTTTATCA
* * ** * * * *
248930 AAGGATGGGTTTTGCTTTATGTTTCCTAGGACAAACATCTAATTATGATCTATTTTAACTAAAAA
325 AAGGATAGCTTTCACTTCATGTTTCCAAGGACAAACAACCAATTATGATCTATTTTAACTAAAAA
*
248995 AGAAAAGAATTCAACTTAAAATCATTTATAAAATTATAAAACTATTTGAAACGAGTAATTAGGCT
390 AGAAAAGAATTCAACTTAAAATCATTTATAAAATTATAAAACTATTTGAAACGAGTAACTAGGCT
* * * * * * *
249060 TTCAAAGGCATGAATTACTATAAGTGGACTTTTTTTGTCAATTGATAGCTTTCACTTCATATTTT
455 TTCAAACGCATGAATGACTATAAGTAGACCTTTTTTGTCAATAGATAGCTTTCACTTCACATTTC
* *
249125 CTAATGTAAACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAG
520 CCAAGGTAAACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAG
249190 TAATTGTAAATGGACTTTTCTTGTAAATAGATGGCTTTCACTA
585 TAATTGTAAATGGACTTTTCTTGTAAATAGATGGCTTTCACTA
* * * * *
249233 CACATTTCTCAAGGCAAACATCCAATTATGATTTGTTTTAA-TGAAAAA-AGAAAAAGAATTCAA
1 CACATTTCTCAAGGAAAACATCCAATTATAATCTCTTTTAACT-AAAAACAAAAAAAG-ATTCAA
* *
249296 CTTAAAATCATTTATAAGATTGTAAAACCT-TTTAAAGTC-AGTAACTTGT-CTTTCAAGGGCAT
64 CTTAAAATCATTTATAAGATTATAAAA-CTATTTAAAG-CGAGTAACTAGTACTTTCAA-GGCAT
* * ** * * ** **
249358 TAGT-GAC-TATAAATGGACTTTTATTGTCAATGGATGACTTTTGCTTTA-CGTTTTTTGGGGCA
126 GAGTGGACATATAAATGGACTTTTATTATCAATGGATGACTTTCAC-TAAGCATTTCCTAAGGCA
*
249420 AACATC-CATTGATGATTTGTTTTAAAC-AAAAATAAAAAAAATTTAACTTAAAATCATGTACGT
190 AACATCTAATT-ATGATTTGTTTT-AACTAAAAAT-AAAAAAATTTAACTTAAAATCATGTA--T
* ** * * *
249483 TATTCTA-CAACCATTAAAAGCAG-GTAACAAGCCATTT-GAAAGCATAAGTAACTATGAATGGA
250 AAGACTATAAACAATTAAAAG-AGAGTAACAAG-CATTTCGAAAGCATAAGTAACTATAAATGGA
* * *
249545 CTTTTTTT-TGAATA-GATAGCTTTCACTTCATGTTTCCCAAGG-CAAAGAACCAATTATGATTT
313 CTTTTTTTATCAA-AGGATAGCTTTCACTTCATGTTT-CCAAGGACAAACAACCAATTATGATCT
* * * **
249607 GTTTTAA-TCAAAAATGAAAATAATTCAACTTAAAATCATTTAT-AAGGTATTAAAAC-A-TTGA
376 ATTTTAACT-AAAAAAGAAAAGAATTCAACTTAAAATCATTTATAAAATTA-TAAAACTATTTGA
* ** * * * *
249668 AAGCGAGTAACTAGTCTTTTGAACTCATGAGTGACTATAAAG-AGACCTTTTTTGTTAATAGATG
439 AA-CGAGTAACTAGGCTTTCAAACGCATGAATGACTAT-AAGTAGACCTTTTTTGTCAATAGATA
** *
249732 GCTTTTGCTTCACATTTCCCGAGGTAAACAT
502 GCTTTCACTTCACATTTCCCAAGGTAAACAT
249763 ACAAATATGA
Statistics
Matches: 434, Mismatches: 77, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
624 9 0.02
625 139 0.32
626 126 0.29
627 106 0.24
628 54 0.12
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (627 bp):
CACATTTCTCAAGGAAAACATCCAATTATAATCTCTTTTAACTAAAAACAAAAAAAGATTCAACT
TAAAATCATTTATAAGATTATAAAACTATTTAAAGCGAGTAACTAGTACTTTCAAGGCATGAGTG
GACATATAAATGGACTTTTATTATCAATGGATGACTTTCACTAAGCATTTCCTAAGGCAAACATC
TAATTATGATTTGTTTTAACTAAAAATAAAAAAATTTAACTTAAAATCATGTATAAGACTATAAA
CAATTAAAAGAGAGTAACAAGCATTTCGAAAGCATAAGTAACTATAAATGGACTTTTTTTATCAA
AGGATAGCTTTCACTTCATGTTTCCAAGGACAAACAACCAATTATGATCTATTTTAACTAAAAAA
GAAAAGAATTCAACTTAAAATCATTTATAAAATTATAAAACTATTTGAAACGAGTAACTAGGCTT
TCAAACGCATGAATGACTATAAGTAGACCTTTTTTGTCAATAGATAGCTTTCACTTCACATTTCC
CAAGGTAAACATGAAATTATAAAATTAATTTTAGGGCGAGTAACCAGGCTTTTGAAGGCATGAGT
AATTGTAAATGGACTTTTCTTGTAAATAGATGGCTTTCACTA
Found at i:252167 original size:170 final size:170
Alignment explanation
Indices: 251728--253069 Score: 1118
Period size: 170 Copynumber: 8.0 Consensus size: 170
251718 AAAAATGAAA
* * * * * * * * ** *
251728 AAAAAAAATTCAACATAAAATTATTTTTAAGATTGTAAAACTATTTAAAGCGAGTAACTTGTCTT
1 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTATT
* * ** * **
251793 TC-AAGGGCATGAGTGACTATAAATAGACTTTTATTGTCAATGGATAAC-TTTAGTTTCACATTT
66 TCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTA-CTTCATGTTT
** * * * * *
251856 CCTGAGGCAAACATCCAATAATAATTTGTTTTAATCAAAAAT
129 CCCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * * * * * *
251898 AAAAATATAAATCAACTTAAAATCTTTTACATGATTCTAAAACCATTTAAAGCGAGTAAG-AAGC
1 AAAAA-A-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGT-AGCTA-C
* * * * * *
251962 CA-TTCCAAGGCATGAGTGACTATACATGCACTTTTCTTTTTAATGGATGGCTTTTACTTCATGT
62 TATTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGT
* *
252026 TTCCCAAGATAAACATCAAATTATGATATGTTTTAACCAAAAAT
127 TTCCCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * * * * *
252070 GAAAAAAATTCAACTTAAAATCATTTATACGATTTTAAAACCATTTAAAGTGACTAGCCACTAAT
1 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTATT
* * * * * * * *
252135 TGGAAGGCGTAAGTGAGTATAAATGGACTTTTCTTATCAATGGATAGTTTTTGCTTCATGTTTCC
66 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTCC
* * *
252200 CATGGA-AAACATCCAATTATGATATATTTTAACAAAAAAT
131 CA-AGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * * * *
252240 GAAGATAATTCAACCTAAAATCATTTAAAAGATTATAAAACCATTTG-AAGTGAGTAGCTTA-TC
1 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCA-TTGAAAGTGAGTAGC-TACTA
* * * * * * * * *
252303 TTTCAAAGGTATGAGCGACTATAAATGGACTTTTCTTATCAATTGATGTCTTTCACTTCAAGTAT
64 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTT
* * *
252368 CCCAAGGCAAACATCCAATTATGATCTGTTTTAATCAAAAAT
129 CCCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * * * * *
252410 AAAAAACAAAT-AATTTAAAATCATTTATAAGATTTTAAAA-CATTGCAAGTGAGTAACTAGTCT
1 AAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTAT
* * * * * * * *
252473 TTCGAAGGTAAGAGCGACTATAAATGGCCTTTTCTTGTCAATGAATGGCTTTTGCTTCATATTTT
65 TTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTC
*** ** * * *
252538 TTGAGGTAAA-ATCTAACTATGATATGTTTTAACTAAAAAT
130 CCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * *
252578 AAAAAAGAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAATA
1 -AAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTA
* * * *
252643 TTTTGAAGGCATGAGTGACTATAAATGGACTTCTT-TAGTCAATGGATGGC-ATT-CGTTCAAGT
64 TTTCGAAGGCATGAGTGACTATAAATGGACTT-TTCTTGTCAATGGATGGCTTTTAC-TTCATGT
** * * *
252705 TT-CTGAGGCAAAGATCCAATTATGATTTGTTTTAA-C----A-
127 TTCCCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * * * *
252742 AAAAAAAATTTAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAATGAGTAGCTAGCCT-
1 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTA--CTA
* * *
252805 TTT-GAAGGTATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTTT
64 TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTT
* * *
252869 CCCTAGACAAACATCTAATTATGAT-TTTTTTAACCAAAAAT
129 CCCAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
* * *
252910 AAAACAAA-TCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAGTATT
1 AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTATT
* * * * * * *
252974 TCGAATGCGTGAGTGACTATAAATGAACTTCTCTTGTAAATGGATGGCTTTTGCTACATGTTTCT
66 TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTC-
* *
253039 CC-AGA-AAACATCTAATTATGATAAGTTTTAA
130 CCAAGACAAACATCCAATTATGATATGTTTTAA
253070 TCAGATATAA
Statistics
Matches: 947, Mismatches: 186, Indels: 80
0.78 0.15 0.07
Matches are distributed among these distances:
160 2 0.00
161 58 0.06
162 49 0.05
163 27 0.03
165 1 0.00
166 1 0.00
167 46 0.05
168 117 0.12
169 97 0.10
170 350 0.37
171 68 0.07
172 124 0.13
173 7 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (170 bp):
AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAGCTACTATT
TCGAAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTACTTCATGTTTCC
CAAGACAAACATCCAATTATGATATGTTTTAACCAAAAAT
Found at i:252391 original size:340 final size:330
Alignment explanation
Indices: 251725--255088 Score: 1338
Period size: 340 Copynumber: 10.1 Consensus size: 330
251715 ATGAAAAATG
* * * * * * *
251725 AAAA-AAAAAAATTCAACATAAAATTATTTTTAAGATTGTAAAACTATTTAAAGCGAGTAACTTG
1 AAAATAAAAAAATT-AACTTAAAATCATTTATAAGATTTTAAAAC-ATTCAAAGTGAGTAGC-T-
* * * * ** * * **
251789 TCTTTC-AAGGGCATGAGTGACTATAAATAGACTTTTATTGTCAATGGATAACTTTAGTTTCACA
62 ACTTTCGAAGGG--TAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG
* * * * * * * *
251853 TTTCCTGA-GGCAAACATCCAATAATAATTTGTTTTAATC-AAAAATAAAAATATAAATCAACTT
125 TTTCC-CATGGAAAACATCTAATTATGATATATTTTAA-CAAAAAATAAGAA-AT---TCAACTT
* * * * * * * * *
251916 AAAATCTTTTACATGATTCTAAAACCATTTAAAGCGAGTAA-GAAGCCA-TTCCAAGGCATGAGT
184 AAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAA--TATTTCAAAGGCATGAGT
* * * * * * ** *
251979 GACTATACATGCACTTTTCTTTTTAATGGATGGCTTTTACTTCATGTTTCCCAAGATAAACATCA
247 GACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAG-TTCCCAAGGCAAACATCC
252044 AATTATGATATGTTTTAACCA
311 AATTATGATATGTTTTAA-CA
* * * *
252065 AAAATGAAAAAAATTCAACTTAAAATCATTTATACGATTTTAAAACCATTTAAAGTGACTAGCCA
1 AAAAT-AAAAAAATT-AACTTAAAATCATTTATAAGATTTTAAAA-CATTCAAAGTGAGTAGCTA
* * * * *
252130 CTAATTGGAAGGCGTAAGTGAGTATAAATGGACTTTTCTTATCAATGGATAGTTTTTGCTTCATG
63 CT--TTCGAAGG-GTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG
* *
252195 TTTCCCATGGAAAACATCCAATTATGATATATTTTAACAAAAAATGAAGATAATTCAACCTAAAA
125 TTTCCCATGGAAAACATCTAATTATGATATATTTTAACAAAAAAT-AAGA-AATTCAACTTAAAA
* * * * * *
252260 TCATTTAAAAGATTATAAAACCATTTG-AAGTGAGTAGCTTATCTTTCAAAGGTATGAGCGACTA
188 TCATTTATAAGATTATAAAACCA-TTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGACTA
* *
252324 TAAATGGACTTTTCTTATCAATTGATGTCTTTCACTTCAAGTATCCCAAGGCAAACATCCAATTA
252 TAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAGT-TCCCAAGGCAAACATCCAATTA
*
252389 TGATCTGTTTTAATCA
316 TGATATGTTTTAA-CA
* * *
252405 AAAATAAAAAACAAATAATTTAAAATCATTTATAAGATTTTAAAACATTGC-AAGTGAGTAACTA
1 AAAAT-AAAAA-AATTAACTTAAAATCATTTATAAGATTTTAAAACATT-CAAAGTGAGTAGCTA
* * *
252469 GTCTTTCGAA-GGTAAGAGCGACTATAAATGGCCTTTTCTTGTCAATGAATGGCTTTTGCTTCAT
63 --CTTTCGAAGGGT-A-AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCAT
* *** * * * * *
252533 ATTTTTTGA-GGTAAA-ATCTAACTATGATATGTTTTAACTAAAAATAAAAAAGAAATTTAACTT
124 -GTTTCCCATGGAAAACATCTAATTATGATATATTTTAAC---AAA-AAATAAGAAATTCAACTT
* **
252596 AAAATCATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAATATTTTGAAGGCATGAGTGA
184 AAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGA
* * * * ** *
252661 CTATAAATGGACTTCT-TTAGTCAATGGATGGCATTC-GTTCAAGTTTCTGAGGCAAAGATCCAA
249 CTATAAATGGACTTTTCTTA-TCAATGGATGGCTTTCACTTCAAGTTCCCAAGGCAAACATCCAA
*
252724 TTATGATTTGTTTTAAC-
313 TTATGATATGTTTTAACA
* * * * *
252741 -AAA-AAAAAATTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAATGAGTAGCTAGCC
1 AAAATAAAAAAATTAACTTAAAATCATTTATAAGATTTTAAAACATTCAAAGTGAGTAGCTA--C
* * **
252804 TTTTGAA-GGTATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTCACTTCATGTT
64 TTTCGAAGGGTA--AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTT
* * * * *
252868 TCCC-TAGACAAACATCTAATTATGAT-TTTTTTAACCAAAAATAAAACAAATCAACTTAAAATC
127 TCCCATGGA-AAACATCTAATTATGATATATTTTAACAAAAAATAAGA-AATTCAACTTAAAATC
* * * *
252931 ATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAGTATTTCGAATGCGTGAGTGACTATAA
190 ATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGACTATAA
* * * * ** * * * *
252996 ATGAACTTCTCTTGTAAATGGATGGCTTTTGCTACATGTTTCTCC-A-GAAAACATCTAATTATG
255 ATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAG-TTC-CCAAGGCAAACATCCAATTATG
*
253059 ATAAG-TTT----
318 ATATGTTTTAACA
* * ** *
253067 ----T-----AA-T--C-----A-GA--TATAAGATTTAAAAACCATTTGAAGTGAGTAACCTAT
1 AAAATAAAAAAATTAACTTAAAATCATTTATAAGATTTTAAAA-CATTCAAAGTGAGT-AGCTA-
** * * * *** *
253112 CTTTC-AAGGGTTGGGTGACTAT-AATGAACTTTTCTTCTCAATGAATGGCTTTCAATTCACGTT
63 CTTTCGAAGGG-TAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTT
* * * * * * * ** * * *
253175 TCCTAAGGCAAACATCCAATGATGATTTGTTTTAAGTAAAAATGAAAAACAAATCAACTGAAAAT
127 TCCCATGGAAAACATCTAATTATGATATATTTTAACAAAAAAT--AAGA-AATTCAACTTAAAAT
* * * * *** * * * *
253240 CATCTATATGATTGTAAAACCATTTAAACCAAGTAAC-AAGCCA-TTCCAAGGTATGGGTGACTA
189 CATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAA--TATTTCAAAGGCATGAGTGACTA
** * * ** * * * *
253303 TAAATCAACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTTCTAAGGCAAACATCCAATGA
252 TAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAG-TTCCCAAGGCAAACATCCAATTA
* *
253368 TGATTTGTTTTAACT
316 TGATATGTTTTAACA
* * * * * * * * * * *
253383 AAAA-AAAAAAATCAATTTAAAATCATCTACATGATTCTGAAACCATTTACAA-TGGGTAACAAG
1 AAAATAAAAAAATTAACTTAAAATCATTTATAAGATT-TTAAAACATTCA-AAGTGAGTAGCTA-
** * * ** * **
253446 CCACTC-CA-GGTATGAGTGACTATAAATGGACTTTTCTTATCAATGGATAACTTTCGCTTCACA
63 -CTTTCGAAGGGTA--AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG
* * * * * * * * * * *
253509 TTTCCTAAGGCAAACAACCAATTATGATATGTATTAATAAAAAAATAAAAAAATTAATAATTTAA
125 TTTCCCATGGAAAACATCTAATTATGATATATTTTAA-CAAAAAAT-AAGAAATT--CAACTTAA
* ** * * * * *
253574 AATCATTTATAAGATTTTAAAA-TGTTGAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGCGACT
186 AATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGACT
* * * * ** * *** * * *
253638 ATAAATGAAATTTTCTCATTAATGGATGGCTTTTGCTTCATGTT-TTGACGTAAAAATCCAATTA
251 ATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAGTTCCCAAGGCAAACATCCAATTA
*
253702 CGATATGTTTTAACTA
316 TGATATGTTTTAAC-A
* * *
253718 AAAATGAAAAAGAAATTTAACTTAAAATCATTTATAAGATTATAAAAGCATTGAAAGTGAGTAAC
1 AAAAT--AAAA-AAA-TTAACTTAAAATCATTTATAAGATTTTAAAA-CATTCAAAGTGAGTAGC
* * * **
253783 TAATATTTC-AAAGGCACGAGTGACTATAAATGGACTTTTCTAATCAATGGATGGC-TTT-CATT
61 T-A-CTTTCGAAGGGTA--AGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGC-TT
* ** * * * * * *
253845 TACATTTCTCGA-GGCAAAA-ATCCAATTATGATATGTTTTAAATAAAAACAAAAAAAAATTCAA
121 CATGTTTC-CCATGG-AAAACATCTAATTATGATATATTTT-AA-CAAAA-AATAAGAAATTCAA
* * * * *** ** *
253908 CTT-AAATCCATTTATAAGATTAT-AAATCTTTTAAAGTGAGTAGCTAGCCTTTTGAAGACATGA
181 CTTAAAAT-CATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGA
* * * * ** * * * *
253971 GCGACTACAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTTCCTAGACAAACAT
245 GTGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCA-AGTTCCCAAGGCAAACAT
* *
254036 CTAATTATGATCTGTTTTAACTA
309 CCAATTATGATATGTTTTAAC-A
* * * * *
254059 AAAATAAAAAAAATTAACTTAAAATCACTTATGAGATTATAAAACCATTGAAAGCGAGT-GCCTA
1 AAAAT-AAAAAAATTAACTTAAAATCATTTATAAGATTTTAAAA-CATTCAAAGTGAGTAG-CT-
* * * * * * * * * * * *
254123 GAGTTTCAAACGCGTGAGTGACTATAAGTGGGCTTCTCTAGTAAATGGAGGGCTTGTGCTTCACG
62 -ACTTTCGAA-GGGTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATG
* * *
254188 TTTCTC--GAGCAAACATCCAATTATG----A--TT---------T--G---TT----TT--AAT
125 TTTCCCATG-GAAAACATCTAATTATGATATATTTTAACAAAAAATAAGAAATTCAACTTAAAAT
* * * ** * * * *
254225 TAGTTATAAGATTATAAAACCATTTAAAGTGAGTAACTTGTCTTTCAAGGGCTTGGGTGACTAT-
189 CATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGACTATA
* * * * * * * * * *
254289 AATGAACTTTTCTTATCAGTGAAAGGTTTTCGCTTCATGTTTCCTAAGGCAAACATCCAATGACG
254 AATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAG-TTCCCAAGGCAAACATCCAATTATG
*
254354 AT-TCATTTTAATCA
318 ATAT-GTTTTAA-CA
* * * * * * *
254368 AAAATGAAAAAAAAAATCAACTTAAAATCATCTACATGATTCTAAAACCATTTAAAGT-AGGTAA
1 AAAAT----AAAAAAATTAACTTAAAATCATTTATAAGATTTTAAAA-CATTCAAAGTGA-GTAG
* * * * * * * * * **
254432 CAAGCCATTCCAAGGCATGAGTGACTCTAAATGGACTTTTTTTGTCAATAGATTGCTTTCACTTC
60 CTA--CTTTCGAAGG-GTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTC
* * * * * * *
254497 ATGTTTCCCAAGGCAAACATCCAATTATGATCTATTTTAACTAAAAATAAAAAAAATTCAACCTA
122 ATGTTTCCCATGGAAAACATCTAATTATGATATATTTTAAC-AAAAA-ATAAGAAATTCAACTTA
* ** * ** * * ** *
254562 AAATTATTTGCAAGATTTTAAAA-CATTGAACTTGAGTAACTAGTGTTTTGAAGGCAT-AATCGA
185 AAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGT-GA
* ** ** * *** * *
254625 CTATAAATGGACTTTACTTGCCAATGGATGGCTTTTGCTTCATGTTTTTGAAGGCAAAAATCTAA
249 CTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCAAG-TTCCCAAGGCAAACATCCAA
254690 TTATGATATGTTTTAACTA
313 TTATGATATGTTTTAAC-A
* * * * *
254709 AAAAGGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACT
1 AAAA--TAAAAAAATT-AACTTAAAATCATTTATAAGATTTTAAAAC-ATTCAAAGTGAGTAGCT
* * * * * ** * *
254774 ACTATTTC-AAAGATATGAATGACTATAAATGGACTTCTT-TAGTTAATGGATAACTTTCGTTTC
62 AC--TTTCGAAGGGTA--AGTGACTATAAATGGACTT-TTCTTGTCAATGGATGGCTTTTGCTTC
* * * * * * * *
254837 ACG-TT-CTAGAGGAAAAGATAC-AA-TATGATCTGTTTTAACGAAAAATAAATAAACTTCAACT
122 ATGTTTCCCA-TGGAAAACAT-CTAATTATGATATATTTTAACAAAAAAT-AAGAAA-TTCAACT
* * * * *** * * *
254898 TAAAATCGTTTATAAGACTAT-AAATCATTCAAAGTGAGTAACTAGCCTCTCGAAGGCATGAATG
183 TAAAATCATTTATAAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTG
* * * * * * *
254962 ACTATAAATGGACTTTTCTTATCAAAGGATGGCTTTCGCTTTATATTTCCTAAGACAAACATCTA
248 ACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCACTTCA-AGTTCCCAAGGCAAACATCCA
*
255027 ATTATGATATGTTTTAGCCAA
312 ATTATGATATGTTTTA-AC-A
*
255048 AAACAGAAAAAAAGATTCAACTTAAAATCATTTATAAGATT
1 AAA-A-TAAAAAA-ATT-AACTTAAAATCATTTATAAGATT
255089 ATGAAACTAT
Statistics
Matches: 2328, Mismatches: 516, Indels: 360
0.73 0.16 0.11
Matches are distributed among these distances:
307 53 0.02
308 36 0.02
309 93 0.04
310 149 0.06
311 23 0.01
312 94 0.04
313 17 0.01
314 1 0.00
315 2 0.00
316 1 0.00
317 1 0.00
318 1 0.00
319 3 0.00
324 2 0.00
328 6 0.00
329 101 0.04
330 23 0.01
331 9 0.00
332 111 0.05
333 19 0.01
334 31 0.01
335 42 0.02
336 138 0.06
337 50 0.02
338 290 0.12
339 231 0.10
340 468 0.20
341 191 0.08
342 130 0.06
343 10 0.00
344 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (330 bp):
AAAATAAAAAAATTAACTTAAAATCATTTATAAGATTTTAAAACATTCAAAGTGAGTAGCTACTT
TCGAAGGGTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCCC
ATGGAAAACATCTAATTATGATATATTTTAACAAAAAATAAGAAATTCAACTTAAAATCATTTAT
AAGATTATAAAACCATTGAAAGTGAGTAACTAATATTTCAAAGGCATGAGTGACTATAAATGGAC
TTTTCTTATCAATGGATGGCTTTCACTTCAAGTTCCCAAGGCAAACATCCAATTATGATATGTTT
TAACA
Found at i:253519 original size:165 final size:165
Alignment explanation
Indices: 253126--253558 Score: 521
Period size: 165 Copynumber: 2.6 Consensus size: 165
253116 CAAGGGTTGG
* * **
253126 GTGACTAT-AATGAACTTTTCTTCTCAATGAATGGCTTTCAATTCACGTTTCCTAAGGCAAACAT
1 GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTAAGGCAAACAT
* *
253190 CCAATGATGATTTGTTTTAAGTAAAAATGAAAAACAAATCAACTGAAAATCATCTATATGATTGT
66 CCAATGATGATTTGTTTTAA-T--AAA--AAAAA-AAATCAACTGAAAATCATCTACATGATTCT
* *
253255 AAAACCATTTAAACCAAGTAACAAGCCATTCCAAGGTATGG
125 AAAACCATTTAAACCAAGTAACAAGCCACTCCAAGGTATGA
* * * * *
253296 GTGACTATAAATCAACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTTCTAAGGCAAACAT
1 GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTAAGGCAAACAT
* * *
253361 CCAATGATGATTTGTTTTAACTAAAAAAAAAAATCAATTTAAAATCATCTACATGATTCTGAAAC
66 CCAATGATGATTTGTTTTAA-TAAAAAAAAAAATCAACTGAAAATCATCTACATGATTCTAAAAC
***
253426 CATTTACAA-TGGGTAACAAGCCACTCC-AGGTATGA
130 CATTTA-AACCAAGTAACAAGCCACTCCAAGGTATGA
* ** * *
253461 GTGACTATAAATGGACTTTTCTTATCAATGGATAACTTTCGCTTCACATTTCCTAAGGCAAACAA
1 GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTAAGGCAAACAT
* * *
253526 CCAATTATGATATGTATTAATAAAAAAATAAAA
66 CCAATGATGATTTGTTTTAATAAAAAAA-AAAA
253559 AAATTAATAA
Statistics
Matches: 228, Mismatches: 32, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
164 8 0.04
165 83 0.36
166 50 0.22
167 7 0.03
169 3 0.01
170 8 0.04
171 69 0.30
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (165 bp):
GTGACTATAAATGAACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTAAGGCAAACAT
CCAATGATGATTTGTTTTAATAAAAAAAAAAATCAACTGAAAATCATCTACATGATTCTAAAACC
ATTTAAACCAAGTAACAAGCCACTCCAAGGTATGA
Found at i:253834 original size:170 final size:168
Alignment explanation
Indices: 253182--254223 Score: 681
Period size: 169 Copynumber: 6.2 Consensus size: 168
253172 GTTTCCTAAG
* * * * * * * *
253182 GCAAACATCCAATGATGATTTGTTTTAAGTAAAAATGAAAAACAAA-TCAACTGAAAATCATCTA
1 GCAAAAATCCAATTATGATATGTTTTAACTAAAAA--AAAAAAAAATTTAACTTAAAATCATTTA
* * * * * * * * * * * **
253246 TATGATTGTAAAACCATTTAAACCAAGTAAC-AAGCCATTCCAAGGTATGGGTGACTATAAATCA
64 TAAGATTATAAAAGCATTGAAAGCGAGTAACTAA-TCTTTCAAAGGCATGAGTGACTATAAATGG
** * * *
253310 ACTTTTCTTGTCAATAGATGGCTTTTGCTTCACGTTTTCTAAG
128 ACTTTTCTAATCAATGGATGGCTTTTGCTTCA--TTTTCTGAC
* * * * * * *
253353 GCAAACATCCAATGATGATTTGTTTTAACT---AAAAAAAAAAA-TCAATTTAAAATCATCTACA
1 GCAAAAATCCAATTATGATATGTTTTAACTAAAAAAAAAAAAAATTTAACTTAAAATCATTTATA
* * * * * * ** * *
253414 TGATTCTGAAACCATTTACAATG-G-GTAAC-AAGCCACTC-CAGGTATGAGTGACTATAAATGG
66 AGATTATAAAAGCATTGA-AA-GCGAGTAACTAA-TCTTTCAAAGGCATGAGTGACTATAAATGG
* ** * * * *
253475 ACTTTTCTTATCAATGGATAACTTTCGCTTCACATTTCCTAAG
128 ACTTTTCTAATCAATGGATGGCTTTTGCTT--CATTTTCTGAC
* *
253518 GCAAACAA-CCAATTATGATATGTATTAA-TAAAAAAATAAAAAAATTAATAATTTAAAATCATT
1 GCAAA-AATCCAATTATGATATGTTTTAACTAAAAAAA-AAAAAAATT--TAACTTAAAATCATT
* * * *
253581 TATAAGATTTTAAAATG--TTGAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGCGACTATAAAT
62 TATAAGATTATAAAA-GCATTGAAAGCGAGTAACTAATCTTTCAAAGGCATGAGTGACTATAAAT
* * * *
253644 GAAATTTTCTCATTAATGGATGGCTTTTGCTTCATGTTT-TGAC
126 GGACTTTTCTAATCAATGGATGGCTTTTGCTTCAT-TTTCTGAC
* * *
253687 GTAAAAATCCAATTACGATATGTTTTAACTAAAAATGAAAAAGAAATTTAACTTAAAATCATTTA
1 GCAAAAATCCAATTATGATATGTTTTAACTAAAAA--AAAAAAAAATTTAACTTAAAATCATTTA
* * *
253752 TAAGATTATAAAAGCATTGAAAGTGAGTAACTAATATTTCAAAGGCACGAGTGACTATAAATGGA
64 TAAGATTATAAAAGCATTGAAAGCGAGTAACTAATCTTTCAAAGGCATGAGTGACTATAAATGGA
*** *
253817 CTTTTCTAATCAATGGATGGCTTTCATTTACA-TTTCTCGAG
129 CTTTTCTAATCAATGGATGGCTTTTGCTT-CATTTTCT-GAC
* *
253858 GCAAAAATCCAATTATGATATGTTTTAAATAAAAACAAAAAAAAATTCAACTT-AAATCCATTTA
1 GCAAAAATCCAATTATGATATGTTTTAACTAAAAA-AAAAAAAAATTTAACTTAAAAT-CATTTA
* * * * * ** ** * * * *
253922 TAAGATTAT-AAATCTTTTAAAGTGAGTAGCTAGCCTTTTGAAGACATGAGCGACTACAAATAGA
64 TAAGATTATAAAAGCATTGAAAGCGAGTAACTAATCTTTCAAAGGCATGAGTGACTATAAATGGA
**
253986 CTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTTCCT-A-
129 CTTTTCTAATCAATGGATGGCTTTTGCTT--CATTTT-CTGAC
* * * * *
254027 GACAAACATCTAATTATGATCTGTTTTAACTAAAAATAAAAAAAA-TTAACTTAAAATCACTTAT
1 G-CAAAAATCCAATTATGATATGTTTTAACTAAAAAAAAAAAAAATTTAACTTAAAATCATTTAT
* * ** * * * * *
254091 GAGATTATAAAACCATTGAAAGCGAGTGCCTAGA-GTTTCAAACGCGTGAGTGACTATAAGTGGG
65 AAGATTATAAAAGCATTGAAAGCGAGTAACTA-ATCTTTCAAAGGCATGAGTGACTATAAATGGA
* * * * * *
254155 CTTCTCTAGTAAATGGAGGGCTTGTGCTTCACGTTTCTCGA-
129 CTTTTCTAATCAATGGATGGCTTTTGCTTCA-TTTTCT-GAC
* *
254196 GCAAACATCCAATTATGATTTGTTTTAA
1 GCAAAAATCCAATTATGATATGTTTTAA
254224 TTAGTTATAA
Statistics
Matches: 705, Mismatches: 128, Indels: 79
0.77 0.14 0.09
Matches are distributed among these distances:
164 1 0.00
165 74 0.10
166 55 0.08
167 12 0.02
168 60 0.09
169 206 0.29
170 149 0.21
171 144 0.20
172 4 0.01
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (168 bp):
GCAAAAATCCAATTATGATATGTTTTAACTAAAAAAAAAAAAAATTTAACTTAAAATCATTTATA
AGATTATAAAAGCATTGAAAGCGAGTAACTAATCTTTCAAAGGCATGAGTGACTATAAATGGACT
TTTCTAATCAATGGATGGCTTTTGCTTCATTTTCTGAC
Found at i:254209 original size:338 final size:339
Alignment explanation
Indices: 253459--254223 Score: 840
Period size: 338 Copynumber: 2.3 Consensus size: 339
253449 CTCCAGGTAT
* * * *** * *
253459 GAGTGACTATAAATGGACTTTTCTTATCAATGGATAACTTTCGCTTCACATTTC-CTAAGGCAAA
1 GAGTGACTATAAATGGACTTCTCTAATAAATGGAGGGCTTTC-ATTCACATTTCTC-GAGGCAAA
* * * *
253523 CAACCAATTATGATATGTATT-AATAAAAAAATAAAAAAATTAATAATTTAAAATCATTTATAAG
64 CATCCAATTATGATATGTTTTAAATAAAAAAATAAAAAAATT-ACAACTTAAAATCATTTATAAG
* * * *
253587 ATTTTAAAATGTTGAAAGCGAGTAACTAGTCTTTCGAAGGCATGAGCGACTATAAATGAAATTTT
128 ATTATAAAATGTTGAAAGCGAGTAACTAGCCTTTCGAAGACATGAGCGACTACAAATGAAATTTT
*
253652 CTCATTAATGGATGGCTTTTGCTTCATGTTTTGACGTAAAAATCCAATTACGATATGTTTTAACT
193 CTCATCAATGGATGGCTTTTGCTTCATGTTTTGACG-AAAAATCCAATTACGATATGTTTTAACT
* * *
253717 AAAAATGAAAAAGAAATTTAACTTAAAATCATTTATAAGATTATAAAAGCATTGAAAGTGAGTAA
257 AAAAATGAAAAAGAAATTTAACTTAAAATCACTTATAAGATTATAAAACCATTGAAAGCGAGTAA
*
253782 CTAATATTTCAAAGGCAC
322 CTAATATTTCAAACGCAC
* * * * *
253800 GAGTGACTATAAATGGACTTTTCTAATCAATGGATGGCTTTCATTTACATTTCTCGAGGCAAAAA
1 GAGTGACTATAAATGGACTTCTCTAATAAATGGAGGGCTTTCATTCACATTTCTCGAGGCAAACA
253865 TCCAATTATGATATGTTTTAAATAAAAACAA-AAAAAAATT-CAACTT-AAATCCATTTATAAGA
66 TCCAATTATGATATGTTTTAAATAAAAA-AATAAAAAAATTACAACTTAAAAT-CATTTATAAGA
* * * * * *
253927 TTAT-AAATCTTTTAAAGTGAGTAGCTAGCCTTTTGAAGACATGAGCGACTACAAAT-AGACTTT
129 TTATAAAAT-GTTGAAAGCGAGTAACTAGCCTTTCGAAGACATGAGCGACTACAAATGA-AATTT
** * * * *
253990 TCTTGTCAATGGATGGCTTTTGCTTCACAT-TTTCCTAGAC-AAACATCTAATTATGATCTGTTT
192 TCTCATCAATGGATGGCTTTTGCTT--CATGTTT--T-GACGAAAAATCCAATTACGATATGTTT
*
254053 TAACTAAAAAT-AAAAA-AAA-TTAACTTAAAATCACTTATGAGATTATAAAACCATTGAAAGCG
252 TAACTAAAAATGAAAAAGAAATTTAACTTAAAATCACTTATAAGATTATAAAACCATTGAAAGCG
** * **
254115 AGTGCCTAGA-GTTTCAAACGCGT
317 AGTAACTA-ATATTTCAAACGCAC
* * * *
254138 GAGTGACTATAAGTGGGCTTCTCTAGTAAATGGAGGGCTTGTGC-TTCACGTTTCTCGA-GCAAA
1 GAGTGACTATAAATGGACTTCTCTAATAAATGGAGGGCTT-T-CATTCACATTTCTCGAGGCAAA
*
254201 CATCCAATTATGATTTGTTTTAA
64 CATCCAATTATGATATGTTTTAA
254224 TTAGTTATAA
Statistics
Matches: 362, Mismatches: 48, Indels: 31
0.82 0.11 0.07
Matches are distributed among these distances:
338 123 0.34
339 100 0.28
340 43 0.12
341 90 0.25
342 3 0.01
343 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (339 bp):
GAGTGACTATAAATGGACTTCTCTAATAAATGGAGGGCTTTCATTCACATTTCTCGAGGCAAACA
TCCAATTATGATATGTTTTAAATAAAAAAATAAAAAAATTACAACTTAAAATCATTTATAAGATT
ATAAAATGTTGAAAGCGAGTAACTAGCCTTTCGAAGACATGAGCGACTACAAATGAAATTTTCTC
ATCAATGGATGGCTTTTGCTTCATGTTTTGACGAAAAATCCAATTACGATATGTTTTAACTAAAA
ATGAAAAAGAAATTTAACTTAAAATCACTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAA
TATTTCAAACGCAC
Found at i:254681 original size:169 final size:169
Alignment explanation
Indices: 254228--255234 Score: 732
Period size: 172 Copynumber: 5.9 Consensus size: 169
254218 TTTTAATTAG
* * * * **
254228 TTATAAGATTATAAAACCATTTAAAGTGAGTAACTTGTCTTTC-AAGGGCTTGGGTGACTAT-AA
1 TTATAAGATTATAAAA-CATTGAAAGTGAGTAACTAGTATTTCGAA-GGCATGAATGACTATAAA
* * * * * * * *
254291 TGAACTTTTCTTATCAGTGAAAGGTTTTCGCTTCATGTTTCCT-AAGGCAAACATCCAATGACGA
64 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CTGAAGGCAAACATCCAATTATGA
* *
254355 T-TCATTTTAA-TCAAAAATGAAAAAAAAAATCAACTTAAAATCAT
128 TAT-GTTTTAACT-AAAAA-G-AAAAAAAATTCAACTTAAAATCAT
* * * * * * * * * *
254399 CTACATGATTCTAAAACCATTTAAAGT-AGGTAACAAGCCA-TTCCAAGGCATGAGTGACTCTAA
1 TTATAAGATTATAAAA-CATTGAAAGTGA-GTAACTAG-TATTTCGAAGGCATGAATGACTATAA
* * * * **
254462 ATGGACTTTTTTTGTCAATAGATTGCTTTCACTTCATGTTTCCCAAGGCAAACATCCAATTATGA
63 ATGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTGAAGGCAAACATCCAATTATGA
* * * * *
254527 TCTATTTTAACTAAAAATAAAAAAAATTCAACCTAAAATTAT
128 TATGTTTTAACTAAAAAGAAAAAAAATTCAACTTAAAATCAT
** * ** * *
254569 TTGCAAGATTTTAAAACATTGAACTTGAGTAACTAGTGTTTTGAAGGCAT-AATCGACTATAAAT
1 TTATAAGATTATAAAACATTGAAAGTGAGTAACTAGTATTTCGAAGGCATGAAT-GACTATAAAT
* * * * * *
254633 GGACTTTACTTGCCAATGGATGGCTTTTGCTTCATGTTTTTGAAGGCAAAAATCTAATTATGATA
65 GGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTGAAGGCAAACATCCAATTATGATA
254698 TGTTTTAACTAAAAAGGAAAAAAAATTCAACTTAAAATCAT
130 TGTTTTAACTAAAAA-GAAAAAAAATTCAACTTAAAATCAT
* * * **
254739 TTATAAGATTATAAAACTATTGAAAGCGAGTAACTACTATTTCAAAGATATGAATGACTATAAAT
1 TTATAAGATTATAAAAC-ATTGAAAGTGAGTAACTAGTATTTCGAAGGCATGAATGACTATAAAT
* * ** * * * * *
254804 GGACTTCTT-TAGTTAATGGATAACTTTCGTTTCACG-TTCT-AGAGGAAAAGATACAA-TATGA
65 GGACTT-TTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTGA-AGGCAAACATCCAATTATGA
* * * * * *
254865 TCTGTTTTAACGAAAAATAAATAAACTTCAACTTAAAATCGT
128 TATGTTTTAACTAAAAAGAAAAAAAATTCAACTTAAAATCAT
* * * ** *
254907 TTATAAGACTATAAATCATTCAAAGTGAGTAACTAGCCTCTCGAAGGCATGAATGACTATAAATG
1 TTATAAGATTATAAAACATTGAAAGTGAGTAACTAGTATTTCGAAGGCATGAATGACTATAAATG
* * * * * *
254972 GACTTTTCTTATCAAAGGATGGCTTTCGCTTTATATTTCCT-AAGACAAACATCTAATTATGATA
66 GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTT-CTGAAGGCAAACATCCAATTATGATA
* *
255036 TGTTTTAGCCAAAAACAGAAAAAAAGATTCAACTTAAAATCAT
130 TGTTTTA-ACTAAAA-AGAAAAAAA-ATTCAACTTAAAATCAT
* * ** * * * * * * *
255079 TTATAAGATTATGAAACTATTTAAAACGAGTAA-TCAATCTTT-GTAGACATGAATGATTGTAAG
1 TTATAAGATTATAAAAC-ATTGAAAGTGAGTAACT-AGTATTTCGAAGGCATGAATGACTATAAA
* * * * ** * *
255142 TGGATTTTTCATGTCAATTGATGGCTTTCGATTCACCTATCAT-AAGGCAAACATCAAATTATGA
64 TGGACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTC-TGAAGGCAAACATCCAATTATGA
* * * *
255206 TCTGATTTGACTAAAAATGAAAACAAATT
128 TATGTTTTAACTAAAAA-GAAAAAAAATT
255235 ATAAGATTAT
Statistics
Matches: 654, Mismatches: 156, Indels: 53
0.76 0.18 0.06
Matches are distributed among these distances:
166 2 0.00
167 61 0.09
168 49 0.07
169 135 0.21
170 93 0.14
171 124 0.19
172 172 0.26
173 18 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
TTATAAGATTATAAAACATTGAAAGTGAGTAACTAGTATTTCGAAGGCATGAATGACTATAAATG
GACTTTTCTTGTCAATGGATGGCTTTCGCTTCATGTTTCTGAAGGCAAACATCCAATTATGATAT
GTTTTAACTAAAAAGAAAAAAAATTCAACTTAAAATCAT
Found at i:256513 original size:169 final size:169
Alignment explanation
Indices: 255762--258585 Score: 1790
Period size: 169 Copynumber: 16.7 Consensus size: 169
255752 GCATGAGTGA
* * * *
255762 ACTTTTATTATCAATGGATGGCTTTCGCTTCA--TATTTCTTAGGATAAACATCC-ATTGATGAT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGT-TTTC-TAAGACAAACATCCAATT-ATGAT
* * * * * * * *
255824 TTGTTTTAACTAAAAAAAAAAAAAAATTCAACTTAAAATCATCTACATGATTCTAGAACCATTAA
63 ATGTTTTAACT-AAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATA-AATCATTTA
* * ** * * *
255889 AAGAGAGTAACAAG-CTATTCCAAGGCCTG-GATGAATATAAATAG
126 AAGCGAGTAACTAGTCT-TTTGAAGGCATGAG-TGACTATAAATGG
* * * * * * * * *
255933 ACTTTTCTTTTTAATGAATGGCCTTCACTTTACGTTTCCCAAGGA-AAACATCCAATTATGATTT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAA-GACAAACATCCAATTATGATAT
* * * * * *
255997 GTTTTAACTATAAAA-GAAAAAAATTCAACTTAGAATCGTTTATAAGATTTTAAAACATTAAAAG
65 GTTTTAACTA-AAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCATTTAAAG
* * * *
256061 CAAGTACCTAGTCTTTTGAAGGTATGAGCGACTATAAATGG
129 CGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * *
256102 ACTTTTCTTATCAATGGATGGCTTTCGCTTCACGTTCTC-AAAACAAGCATCCAATTATGATCTG
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATATG
* * *
256166 TTTTAA-TCAAAAATAAAAGAAAGGTTCAACTTAAAATCATTTATAAAATTATCAAACCATTTAA
66 TTTTAACT-AAAAATAAAA-AAA-ATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAA
* ** *
256230 AGCGA-TAAACTAGTATTTCAAAGGCATGAGTGGCTATATAAATGG
127 AGCGAGT-AACTAGTCTTTTGAAGGCATGAGTGAC--TATAAATGG
* ** * ** * * * *
256275 ACTTTTCTTGTCAATGAATAACTCTT-TCTTCATATGTCCTAAGGA-AAATATCCAATTATGATC
1 ACTTTTCTTGTCAATGGATGGCT-TTCGCTTCACGTTTTCTAA-GACAAACATCCAATTATGATA
* * * * * *
256338 TGTTTTAACTATAAATAAAAAAAATTTAACTTAAAATCATTTAAAAGACTATAAATCAGTCAAAG
64 TGTTTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCATTTAAAG
* * * * *
256403 CAAGTAACTAGTCTTTTGAAGGTATGACTGACTGTAAATAG
129 CGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
**
256444 ACTTTTCTTGT-AGAAAGATGGCATTT-GCTTCACGTTTTCTAAGACAAACATCCAATTATGATA
1 ACTTTTCTTGTCA-ATGGATGGC-TTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATA
* * *
256507 TGTTTTAGCTAAAAAT-AAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAAGT-ATTTGA
64 TGTTTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAA-TCATTTAA
* * * * *
256570 AGCGAGTAATTAGGCTTTCGAAGGCATGAATGTCTATAAATGG
127 AGCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * ** * *
256613 ACTTTTCTTGTCAAAT-GATGGCTTTCACTTCACTTTTTCTAATG-CAAATATGAAATTACGATC
1 ACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTTCTAA-GACAAACATCCAATTATGATA
* * * * * * * * ** *
256676 TATTTTAACCAAGAATTAAAAAAA-TCAATTTAAAATTATTTTTGATTTTATAAAATCAATTAAA
64 TGTTTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAAA
* * * * * *
256740 GTGAGTAACAAGGCTTTTGAAAGCATGAATGACTGTAAATGG
128 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * **
256782 ACTTTTCTTGTAAATGGATGGCTTTCGCTTCATGATTTTC-AATGA-AAGGATCCAATTATGA-A
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACG-TTTTCTAA-GACAAACATCCAATTATGATA
* ** * * * **
256844 TTATTTTAACCCAAAATGAAAAACAACTCAACTTAAAATCATTTATAAGATTATAAAACTATGGA
64 -TGTTTTAACTAAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATC-ATTTA
* * * *
256909 AAGCGAGTAACTAGTCTTTTAAAGGTATGAGTGGCTATAAGTGG
126 AAGCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * *
256953 ACCTTTT-TTATCAATGGATAGCTTTCACTTGATGTTTCCTAATG-CAAACATCCAATTATGATA
1 A-CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAA-GACAAACATCCAATTATGATA
** * ** * * * * *
257016 TGCGTTGA-TGAAAAA-GGACAAAATTCAACTTAAAATCATTTTTAAGATTACAAAACCATGTAA
64 TGTTTTAACT-AAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTA-TAAATCATTTAA
* * * *
257079 AGCGAGTAACTAGTATTTTGAAAGCACGAGTGGCTATAAATGG
127 AGCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * *
257122 ACTTTTTTTGTCAATTGATGGCTTTTGCATCATGTTTCTCAAAG-CAAACATCCAATTATGCTAT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTT-TCTAAGACAAACATCCAATTATGATAT
** * *
257186 GTTTTAA-TGAAAAAGGAAAAACATTCAACTTAAAATCATTCATAAGATTATAAAATCATTTAAA
65 GTTTTAACT-AAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAAA
** * * * * * * ** *
257250 TAGGGTACCAAGTAC-TTGGAAGCCATGAGTGATTGGAAATGA
128 GCGAGTAACTAGT-CTTTTGAAGGCATGAGTGACTATAAATGG
* * * *
257292 ATCTTTT-TTGTCAATGGATGGCTTTCCCTTCATGTTTTCAAAGATAAACATCCAATTATGA-AT
1 A-CTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATAT
** * * * * *
257355 AATTTAA--AAAACAT-TAAAAAATTTAATTTAAAATTATTTATAAGATTATAAAACCATTTAAA
65 GTTTTAACTAAAA-ATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAAA
* * * * * *
257417 GTGACTAACTAGTATTTCGAAGGTATGAGTGACTATAAGTGG
128 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* ** * ** * * *
257459 ACTTTTCTTGTCAGTGGATGATTTTTGCTTTGCATTCTCCT-AGACAAACATCCAATTATGATGT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTT-TTCTAAGACAAACATCCAATTATGATAT
* * * * * * * * *
257523 ATTTTAGCAGAAAAATGAATAAAATTCAACCTAAAATCATTTGTAAGATTAGAAAACCATTTAAA
65 GTTTTAAC-TAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTA-TAAATCATTTAAA
* * * * * * * * *
257588 GCAAGTAATTAGGCTTTCGAAGGTATGAATAACTACAAATAG
128 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * * * * *
257630 ACTTTTCTTG-CTAGTTGATGACTTTCACTTCATCATTTTTTATG-TAAACATCAAATTATGATC
1 ACTTTTCTTGTC-AATGGATGGCTTTCGCTTCA-CGTTTTCTAAGACAAACATCCAATTATGATA
* * * * * **
257693 TCTTTTAACAAAAAATGAAAAAAA-T-AAATTAAAAATCATTTTTAA-AGTTATAAAATCACGTA
64 TGTTTTAACTAAAAATAAAAAAAATTCAACTT-AAAATCATTTATAAGA-TTAT-AAATCATTTA
* * *
257755 AAGCGAGTAACTAGGCTTTTGAAGGCGTGAGTGACCATAAATGG
126 AAGCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * * * *
257799 ACTTTGCTT-ACAAATAGATGGTTTTCACTTCATG-TTTCTCAAGGCAAACATCAAATTATGATT
1 ACTTTTCTTGTC-AATGGATGGCTTTCGCTTCACGTTTTCT-AAGACAAACATCCAATTATGATA
* * * * * *
257862 TGTTTTAA-TGAAAAATGAATAAGAATTCAGCTTAAAATAATTTATAAGACTATAAATCATTCAA
64 TGTTTTAACT-AAAAAT-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCATTTAA
** * * * * *
257926 AGTAACTAACTAGTC-TTTCAAGGCATGAGTAACAATAGATGG
127 AGCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * * *
257968 AC-TTTCTTGTCAATAGATGGCTTTCACTTTACATTTCCCAAGGCAAACATCCAATTATGATCT-
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATATG
* * *** * * * *
258031 TCTCTAACCAAAAATAAAAAAAAAAGAACTTAAAATCATATATAAG------ACTCATTCAAAGT
66 T-TTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCATTTAAAGC
*
258090 GAGTAACTAG-CTTTTTGAAGGCATGAGTGACTGTAAATGG
130 GAGTAACTAGTC-TTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * * * * *
258130 ACTTTTCTTATTAATAGATGACTTTTGCTTCATGTTTCCCAAGACAAACATCCAATTATGATCTA
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATATG
* * * * *
258195 TTTTAGCCAAAAATGACAAAAAAGTTCAACCTAAAATCATTTATAAGATTATAAAACCATTTAAA
66 TTTTAACTAAAAAT-A-AAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAAA
** * * * *
258260 GTAAGTAACTAGTGTTTCGAAGGTATGAGTGGCTATAAATGG
128 GCGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * *
258302 ACTTTTCTTGTCAATAGATGGTTTTTGCTTCAC-ATTTCGAGAGGCAAAAATCCAATTATGATAT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTA-AGACAAACATCCAATTATGATAT
* * * * * *
258366 GCTTTAACCAAAAATGAAAAAAATTCAGCTTAAAATCATTTACAAGATTATAAAACCATTT----
65 GTTTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCATTTAAAG
* * * * * * *
258427 CAAGTAAGTAGTATTTCGAAAGCATGAGTGACGACAAATGG
129 CGAGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
* * * * * * * *
258468 ACTTTTCCTGTCAATGGATGGCTTTTGCTTTAGGTTTCCTAAGGA-AAACATCCAATGAGGATTT
1 ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAA-GACAAACATCCAATTATGATAT
* * *
258532 ATTTTAACTAAAAATGAAAAAAAAATT-AACTTAAAATCATTTATTAGAGTATAA
65 GTTTTAACTAAAAAT--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
258586 TGTTTGTCCT
Statistics
Matches: 2078, Mismatches: 476, Indels: 203
0.75 0.17 0.07
Matches are distributed among these distances:
160 1 0.00
161 20 0.01
162 24 0.01
163 63 0.03
164 2 0.00
165 24 0.01
166 96 0.05
167 171 0.08
168 157 0.08
169 631 0.30
170 285 0.14
171 375 0.18
172 151 0.07
173 39 0.02
174 37 0.02
175 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
ACTTTTCTTGTCAATGGATGGCTTTCGCTTCACGTTTTCTAAGACAAACATCCAATTATGATATG
TTTTAACTAAAAATAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCATTTAAAGCG
AGTAACTAGTCTTTTGAAGGCATGAGTGACTATAAATGG
Found at i:257000 original size:340 final size:336
Alignment explanation
Indices: 255774--258585 Score: 1282
Period size: 340 Copynumber: 8.3 Consensus size: 336
255764 TTTTATTATC
** * * * * * *
255774 AATGGATGGCTTTCGCTTCATATTTCTTAGGATAAACATCC-ATTGATGATTTGTTTTAACTAAA
1 AATGGATGGCTTTCGCTTCACGTTT-TCAAGACAAGCATCCAATT-ATGATATGTTTTAAC--CA
* * * * * * * * * *
255838 AAAAAAAAAAAATTCAACTTAAAATCATCTACATGATTCTAGAACCATTAAAAGAGAGTAACAAG
62 AAAATAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAG
* * ** * * * * * * *
255903 -CTATTCCAAGGCCTG-GATGAATATAAATAGACTTTTCTTTTTAATGAATGGCCTTCACTTTAC
127 TCT-TTCAAAGGCATGAG-TGGCTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCA-
* * * * * * * * * * *
255966 GTTTCCCAAGGAAAACATCCAATTATGATTTGTTTTAACTATAAA-AGAAAAAAATTCAACTTAG
189 TTTTCCTAATGCAAATATCAAATTACGATCTATTTTAACCATAAATA-AAAAAAATTCAACTTAA
* * * * * * * * * * * * ** *
256030 AATCGTTTATAAGATTTTAAAACATTAAAAGCAAGTACCTAGTCTTTTGAAGGTATGAGCGACTA
253 AATCATTTAAAAGACTATAAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACTG
* *
256095 TAAATGGACTTTTCTTATC
318 TAAATGGACTTTTCTTGTA
* * * *
256114 AATGGATGGCTTTCGCTTCACGTTCTCAAAACAAGCATCCAATTATGATCTGTTTTAATCAAAAA
1 AATGGATGGCTTTCGCTTCACGTTTTCAAGACAAGCATCCAATTATGATATGTTTTAACCAAAAA
* * * *
256179 TAAAAGAAAGGTTCAACTTAAAATCATTTATAAAATTATCAAACCATTTAAAGCGA-TAAACTAG
66 TAAAA-AAA--TTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGT-AACTAG
* * * *
256243 TATTTCAAAGGCATGAGTGGCTATATAAATGGACTTTTCTTGTCAATGAATAACTCTT-TCTTCA
127 TCTTTCAAAGGCATGAGTGGC--TATAAATGGACTTTTCTTGTCAATGGATAGCT-TTCACTTCA
* * * * * * * *
256307 TATGTCCTAAGGAAAATATCCAATTATGATCTGTTTTAACTATAAATAAAAAAAATTTAACTTAA
189 T-TTTCCTAATGCAAATATCAAATTACGATCTATTTTAACCATAAATAAAAAAAATTCAACTTAA
* * * * * *
256372 AATCATTTAAAAGACTATAAATCAGTCAAAGCAAGTAACTAGTCTTTTGAAGGTATGACTGACTG
253 AATCATTTAAAAGACTATAAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACTG
*
256437 TAAATAGACTTTTCTTGTA
318 TAAATGGACTTTTCTTGTA
* * * *
256456 GAA-AGATGGCATTT-GCTTCACGTTTTCTAAGACAAACATCCAATTATGATATGTTTTAGCTAA
1 -AATGGATGGC-TTTCGCTTCACGTTTTC-AAGACAAGCATCCAATTATGATATGTTTTAACCAA
* * *
256519 AAATAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAAGTATTTG-AAGCGAGTAATTAG
63 AAATAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTA-TTGAAAGCGAGTAACTAG
* * * * *
256583 GCTTTCGAAGGCATGAATGTCTATAAATGGACTTTTCTTGTCAAAT-GATGGCTTTCACTTCACT
127 TCTTTCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTC-AATGGATAGCTTTCACTTCA-T
* * * *
256647 TTTTCTAATGCAAATATGAAATTACGATCTATTTTAACCA-AGAATTAAAAAAA-TCAATTTAAA
190 TTTCCTAATGCAAATATCAAATTACGATCTATTTTAACCATA-AATAAAAAAAATTCAACTTAAA
* *** *** * **
256710 ATTATTTTTGATTTTATAAAATCAATTAAAGTGAGTAACAAGGCTTTTGAAAGCATGAATGACTG
254 ATCATTTAAAAGACTAT-AAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACTG
256775 TAAATGGACTTTTCTTGTA
318 TAAATGGACTTTTCTTGTA
* * * *
256794 AATGGATGGCTTTCGCTTCATGATTTTCAATGA-AAGGATCCAATTATGA-ATTATTTTAACCCA
1 AATGGATGGCTTTCGCTTCACG-TTTTCAA-GACAAGCATCCAATTATGATA-TGTTTTAACCAA
* *
256857 AAATGAAAAACAACTCAACTTAAAATCATTTATAAGATTATAAAACTATGGAAAGCGAGTAACTA
63 AAAT-AAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTA
* * * * *
256922 GTCTTTTAAAGGTATGAGTGGCTATAAGTGGACCTTTT-TTATCAATGGATAGCTTTCACTTGAT
126 GTCTTTCAAAGGCATGAGTGGCTATAAATGGA-CTTTTCTTGTCAATGGATAGCTTTCACTTCAT
* * * * *** * ** * *
256986 GTTTCCTAATGCAAACATCCAATTATGATATGCGTTGATGA-AAA-AGGACAAAATTCAACTTAA
190 -TTTCCTAATGCAAATATCAAATTACGATCTATTTTAACCATAAATA-AAAAAAATTCAACTTAA
** * * * * * * * ** * * *
257049 AATCATTTTTAAGATTACAAAACCATGTAAAGCGAGTAACTAGTATTTTGAAAGCACGAGTGGCT
253 AATCATTTAAAAGACTATAAATCAAT-CAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACT
* * *
257114 ATAAATGGACTTTTTTTGTC
317 GTAAATGGACTTTTCTTGTA
* * * * * * **
257134 AATTGATGGCTTTTGCATCATGTTTCTCAA-AGCAAACATCCAATTATGCTATGTTTTAATGAAA
1 AATGGATGGCTTTCGCTTCACGTTT-TCAAGA-CAAGCATCCAATTATGATATGTTTTAACCAAA
* * * * ** * * *
257198 AAGGAAAAACATTCAACTTAAAATCATTCATAAGATTATAAAA-TCATTTAAATAGGGTACCAAG
64 AA-TAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACT-ATTGAAAGCGAGTAACTAG
** * ** ** * * *
257262 TAC-TTGGAAGCCATGAGTGATTGGAAATGAATCTTTT-TTGTCAATGGATGGCTTTCCCTTCAT
127 T-CTTTCAAAGGCATGAGTGGCTATAAATGGA-CTTTTCTTGTCAATGGATAGCTTTCACTTCAT
* * * * * * * * * * * *
257325 GTTTTC-AAAGATAAACATCCAATTATGA-ATAATTTAA--A-AAACATTAAAAAATTTAATTTA
190 -TTTCCTAATG-CAAATATCAAATTACGATCTATTTTAACCATAAATA-AAAAAAATTCAACTTA
* * * * * * ** * * ** * * * *
257385 AAATTATTTATAAGATTATAAAACCATTTAAAGTGACTAACTAGTATTTCGAAGGTATGAGTGAC
252 AAATCATTTAAAAGACTAT-AAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGAC
* * *
257450 TATAAGTGGACTTTTCTTGTC
316 TGTAAATGGACTTTTCTTGTA
* ** * ** * * * * * * * *
257471 AGTGGATGATTTTTGCTTTGCATTCTCCTAGACAAACATCCAATTATGATGTATTTTAGCAGAAA
1 AATGGATGGCTTTCGCTTCACGTT-TTCAAGACAAGCATCCAATTATGATATGTTTTAAC-CAAA
* * * * * * * * *
257536 AATGAATAAAATTCAACCTAAAATCATTTGTAAGATTAGAAAACCATTTAAAGCAAGTAATTAGG
64 AAT-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAGT
* * * ** * * * *
257601 CTTTCGAAGGTATGAATAACTACAAATAGACTTTTCTTG-CTAGTTGAT-GACTTTCACTTCATC
128 CTTTCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTC-AATGGATAG-CTTTCACTTCAT-
* * * * * * * * * *
257664 ATTT-TTTATGTAAACATCAAATTATGATCTCTTTTAACAAAAAATGAAAAAAA-T-AAATTAAA
190 -TTTCCTAATGCAAATATCAAATTACGATCTATTTTAACCATAAATAAAAAAAATTCAACTT-AA
* * * * * * * *
257726 AATCATTTTTAAAG-TTATAAAATCACGT-AAAGCGAGTAACTAGGCTTTTGAAGGCGTGAGTGA
253 AATCA-TTTAAAAGACTAT-AAATCA-ATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGA
** * **
257789 CCATAAATGGACTTTGCTTACA
315 CTGTAAATGGACTTTTCTTGTA
* * * * * * * * **
257811 AATAGATGGTTTTCACTTCATGTTTCTCAAGGCAAACATCAAATTATGATTTGTTTTAATGAAAA
1 AATGGATGGCTTTCGCTTCACGTTT-TCAAGACAAGCATCCAATTATGATATGTTTTAACCAAAA
* * * * * * ** *
257876 ATGAATAAGAATTCAGCTTAAAATAATTTATAAGACTATAAATC-ATTCAAAGTAACTAACTAGT
65 AT-AA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAGT
** * * * *
257940 CTTTC-AAGGCATGAGTAACAATAGATGGAC-TTTCTTGTCAATAGATGGCTTTCACTTTACA-T
128 CTTTCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCAC-TT-CATT
* * * * * * * ***
258002 TTCCCAAGGCAAACATCCAATTATGATCT-TCTCTAACCAAAAATAAAAAAAAAAGAACTTAAAA
191 TTCCTAATGCAAATATCAAATTACGATCTAT-TTTAACCATAAATAAAAAAAATTCAACTTAAAA
* * * ** * * *
258066 TCATATATAAGAC------TCATTCAAAGTGAGTAACTA-GCTTTTTGAAGGCATGAGTGACTGT
255 TCATTTAAAAGACTATAAATCAATCAAAGCAAGTAACAAGGC-TTTTGAAAGCATGAATGACTGT
* *
258124 AAATGGACTTTTCTTATT
319 AAATGGACTTTTCTTGTA
* * * * * * * * *
258142 AATAGATGACTTTTGCTTCATGTTTCCCAAGACAAACATCCAATTATGATCTATTTTAGCCAAAA
1 AATGGATGGCTTTCGCTTCACGTTT-TCAAGACAAGCATCCAATTATGATATGTTTTAACCAAAA
* * * **
258207 ATGACAAAAAAGTTCAACCTAAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAACTAG
65 AT-A-AAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAG
* * * * * * ** *
258272 TGTTTCGAAGGTATGAGTGGCTATAAATGGACTTTTCTTGTCAATAGATGGTTTTTGCTTCACAT
127 TCTTTCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCA-TT
* * * * * * ** * * *
258337 TT-CGAGAGGCAAAAATCCAATTATGATATGCTTTAACCAAAAATGAAAAAAATTCAGCTTAAAA
191 TTCCTA-ATGCAAATATCAAATTACGATCTATTTTAACCATAAATAAAAAAAATTCAACTTAAAA
* * * *** ** ** * * *
258401 TCATTTACAAGATTAT-AA--AACCATTTCAAGTAAGTAGTATTTCGAAAGCATGAGTGAC-GAC
255 TCATTTAAAAGACTATAAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACTG-T
* *
258462 AAATGGACTTTTCCTGTC
319 AAATGGACTTTTCTTGTA
* * * * * * * * * *
258480 AATGGATGGCTTTTGCTTTAGGTTTCCTAAGGA-AAACATCCAATGAGGATTTATTTTAACTAAA
1 AATGGATGGCTTTCGCTTCACGTTTTC-AA-GACAAGCATCCAATTATGATATGTTTTAACCAAA
* *
258544 AATGAAAAAAAAATT-AACTTAAAATCATTTATTAGAGTATAA
64 AAT---AAAAAAATTCAACTTAAAATCATTTATAAGATTATAA
258586 TGTTTGTCCT
Statistics
Matches: 1939, Mismatches: 436, Indels: 197
0.75 0.17 0.08
Matches are distributed among these distances:
330 3 0.00
331 111 0.06
332 29 0.01
333 24 0.01
334 24 0.01
335 83 0.04
336 8 0.00
337 251 0.13
338 418 0.22
339 232 0.12
340 507 0.26
341 25 0.01
342 179 0.09
343 45 0.02
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (336 bp):
AATGGATGGCTTTCGCTTCACGTTTTCAAGACAAGCATCCAATTATGATATGTTTTAACCAAAAA
TAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGAGTAACTAGTCTT
TCAAAGGCATGAGTGGCTATAAATGGACTTTTCTTGTCAATGGATAGCTTTCACTTCATTTTCCT
AATGCAAATATCAAATTACGATCTATTTTAACCATAAATAAAAAAAATTCAACTTAAAATCATTT
AAAAGACTATAAATCAATCAAAGCAAGTAACAAGGCTTTTGAAAGCATGAATGACTGTAAATGGA
CTTTTCTTGTA
Found at i:257514 original size:677 final size:667
Alignment explanation
Indices: 256068--258495 Score: 1714
Period size: 677 Copynumber: 3.6 Consensus size: 667
256058 AAGCAAGTAC
* * * * *
256068 CTAGTCTTTT-GAAGGTATGAGCGACTATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTT
1 CTAG-CTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGACTTTTGCTT
* * * * * **
256132 CACGT-TCTCAAAACAAGCATCCAATTATGATCTGTTTTAATCAAAAAT-AAAAGAAAGGTTCAA
65 CATGTCTCCCAAGACAAACATCCAATTATGATCTATTTTAGCCAAAAATGAAAA-AAA--TTCAA
* * * * * * *
256195 CTTAAAATCATTTATAAAATTATCAAACCATTTAAAGCGA-TAAACTAGTATTTCAAAGGCATGA
127 CCTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGT-AACTAGTCTTTCGAAGGTATGA
* * * * *
256259 GTGGCTATATAAATGGACTTTTCTTGTCAAT-GAATAACTCTT-TCTTCATATGTCCTAAGGAAA
191 GTGGC--TATAAATGGACTTTTCTT-TCAATAG-AT-GCT-TTCACTTCATAT-TTCTAATGCAA
* * * * **
256322 ATATCCAATTATGATCTGTTTTAACTATAAATAA--AAAAAATTTAACTTAAAATCATTTAAAAG
249 ACATCCAATTATGATATGCTTTAAC-A-AAA-AAGGAAAAAATTCAACTTAAAATCATTTTTAAG
* * * * * * * ** *
256385 ACTAT-AAATCA-GTCAAAGCAAGTAACTAGTCTTTTGAAGGTATGACTGACTGTAAATAGACTT
311 ATTATAAAACCATGT-AAAGCGAGTAACTAGTATTTTGAAAGCATGAGTGACCATAAATGGACTT
* * * * * *
256448 TTCTTGT-AGAAAGATGGCATTTGC-TTCACGTTT-TCTAAGACAAACATCCAATTATGATATGT
375 TTCTTGTCA-ATAGATGGCTTTTGCACTCATGTTTCTCAAAG-CAAACATCAAATTATGATATGT
* * * * * * * **
256510 TTTAGCT-AAAAA-TAA-AAAAATTTAACTTAAAATCATTTATAAGATTATAAAAGT-ATTTGAA
438 TTTA-ATGAAAAAGGAATAAGAATTCAACTTAAAATAATTCATAAGACTAT-AAA-TCATTCAAA
** * ** * * * * ** * * *
256571 GCGAGTAATTAGGCTTTCGAAGGCATGAATGTCTATAAATGGACTTTTCTTGTCAA-ATGATGGC
500 GTAACTAACAAGTCTTGC-AAGCCATGAGTAACAAGAAATGAAC-TTTCTTGTCAATA-GATGGC
* * * * ** * * * * *
256635 TTTCACTTCACTTTTTCTAATG-CAAATATGAAATTACGATCTAT-TTTAACCAAGAAT-TAAAA
562 TTTCACTTCAC-ATTTCCAAAGACAAACATCCAATTATGAT-AATCTCTAA-CAAAAATAAAAAA
** * * *
256697 AAATCAATTTAAAATTATTTTTGATTTTATAA-AATCAATT-AAAGTGAGTAA
624 AAAAGAACTTAAAATCA----T-A---TATAAGAATC-ATTCAAAGTGACTAA
* * * * * * * * *
256748 CAAGGCTTTT-GAAAGCATGAATGACTGTAAATGGACTTTTCTTGTAAATGGATGGCTTTCGCTT
1 CTA-GCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGACTTTTGCTT
** ** * * *
256812 CATGAT-TTTCAATGA-AAGGATCCAATTATGAAT-TATTTTAACCCAAAATGAAAAACAACTCA
65 CATG-TCTCCCAA-GACAAACATCCAATTATG-ATCTATTTTAGCCAAAAATGAAAAA-AATTCA
* * ** * **
256874 ACTTAAAATCATTTATAAGATTATAAAACTATGGAAAGCGAGTAACTAGTCTTTTAAAGGTATGA
126 ACCTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGTCTTTCGAAGGTATGA
* * * *
256939 GTGGCTATAAGTGGACCTTTT-TTATCAATGGATAGCTTTCACTTGATGTTTCCTAATGCAAACA
191 GTGGCTATAAATGGA-CTTTTCTT-TCAATAGAT-GCTTTCACTTCATATTT-CTAATGCAAACA
* * ** * *
257003 TCCAATTATGATATGCGTTGATGAAAAAGGACAAAATTCAACTTAAAATCATTTTTAAGATTACA
252 TCCAATTATGATATGCTTTAACAAAAAAGGAAAAAATTCAACTTAAAATCATTTTTAAGATTATA
* * * *
257068 AAACCATGTAAAGCGAGTAACTAGTATTTTGAAAGCACGAGTGGCTATAAATGGACTTTTTTTGT
317 AAACCATGTAAAGCGAGTAACTAGTATTTTGAAAGCATGAGTGACCATAAATGGACTTTTCTTGT
* * *
257133 CAATTGATGGCTTTTGCA-TCATGTTTCTCAAAGCAAACATCCAATTATGCTATGTTTTAATGAA
382 CAATAGATGGCTTTTGCACTCATGTTTCTCAAAGCAAACATCAAATTATGATATGTTTTAATGAA
* * * ** *
257197 AAAGGAA-AA-ACATTCAACTTAAAATCATTCATAAGATTATAAAATCATTTAAA-TAGGGTACC
447 AAAGGAATAAGA-ATTCAACTTAAAATAATTCATAAGACTAT-AAATCATTCAAAGTA-ACTAAC
* * *** * * *
257259 AAGTACTTGGAAGCCATGAGTGATTGGAAATGAATCTTTTTTGTCAATGGATGGCTTTCCCTTCA
509 AAGT-CTTGCAAGCCATGAGTAACAAGAAATGAA-CTTTCTTGTCAATAGATGGCTTTCACTTCA
** * * * *** *
257324 TGTTTTCAAAGATAAACATCCAATTATGAATAAT-T-TAA-AAAACAT-TAAAAAATTTAATTTA
572 CATTTCCAAAGACAAACATCCAATTATG-ATAATCTCTAACAAAA-ATAAAAAAAAAAGAACTTA
* * *
257385 AAATTATTTATAAGATTATAAAACCATTTAAAGTGACTAA
635 AAATCATATATAAGA--AT-----CATTCAAAGTGACTAA
* * * * * *
257425 CTAG-TATTTCGAAGGTATGAGTGACTATAAGTGGACTTTTCTTGTCAGTGGATGATTTTTGCTT
1 CTAGCT-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGACTTTTGC-T
* * * *
257489 TGCAT-TCT-CCTAGACAAACATCCAATTATGATGTATTTTAGCAGAAAAATGAATAAAATTCAA
64 T-CATGTCTCCCAAGACAAACATCCAATTATGATCTATTTTAGC-CAAAAATGAAAAAAATTCAA
* * * * *
257552 CCTAAAATCATTTGTAAGATTAGAAAACCATTTAAAGCAAGTAATTAGGCTTTCGAAGGTATGAA
127 CCTAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGTCTTTCGAAGGTATGAG
** * * * * * * * *
257617 TAACTACAAATAGACTTTTCTTGCTAGTTGATGACTTTCACTTCATCATTTTTTATGTAAACATC
192 TGGCTATAAATGGACTTTTCTTTC-AATAGATG-CTTTCACTTCAT-ATTTCTAATGCAAACATC
* * * * *
257682 AAATTATGATCT-CTTTTAACAAAAAATGAAAAAAAT-AAATTAAAAATCATTTTTAA-AGTTAT
254 CAATTATGATATGC-TTTAACAAAAAAGGAAAAAATTCAACTT-AAAATCATTTTTAAGA-TTAT
* * ** * * *
257744 AAAATCACGTAAAGCGAGTAACTAGGCTTTTGAAGGCGTGAGTGACCATAAATGGACTTTGCTT-
316 AAAACCATGTAAAGCGAGTAACTAGTATTTTGAAAGCATGAGTGACCATAAATGGACTTTTCTTG
* * *
257808 ACAAATAGATGG-TTTT-CACTTCATGTTTCTCAAGGCAAACATCAAATTATGATTTGTTTTAAT
381 TC-AATAGATGGCTTTTGCAC-TCATGTTTCTCAAAGCAAACATCAAATTATGATATGTTTTAAT
* * *
257871 GAAAAATGAATAAGAATTCAGCTTAAAATAATTTATAAGACTATAAATCATTCAAAGTAACTAAC
444 GAAAAAGGAATAAGAATTCAACTTAAAATAATTCATAAGACTATAAATCATTCAAAGTAACTAAC
* * * * * * *
257936 TAGTCTTTCAAGGCATGAGTAACAATAGATGGACTTTCTTGTCAATAGATGGCTTTCACTTTACA
509 AAGTCTTGCAAGCCATGAGTAACAAGAAATGAACTTTCTTGTCAATAGATGGCTTTCACTTCACA
* * **
258001 TTTCCCAAGGCAAACATCCAATTATGATCTTCTCTAACCAAAAATAAAAAAAAAAGAACTTAAAA
574 TTTCCAAAGACAAACATCCAATTATGATAATCTCTAA-CAAAAATAAAAAAAAAAGAACTTAAAA
* *
258066 TCATATATAAGACTCATTCAAAGTGAGTAA
638 TCATATATAAGAATCATTCAAAGTGACTAA
* * *
258096 CTAGCTTTTTGAAGGCATGAGTGACTGTAAATGGACTTTTCTTATTAATAGATGACTTTTGCTTC
1 CTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGACTTTTGCTTC
*
258161 ATGTTTCCCAAGACAAACATCCAATTATGATCTATTTTAGCCAAAAATGACAAAAAAGTTCAACC
66 ATGTCTCCCAAGACAAACATCCAATTATGATCTATTTTAGCCAAAAATGA-AAAAAA-TTCAACC
* *
258226 TAAAATCATTTATAAGATTATAAAACCATTTAAAGTAAGTAACTAGTGTTTCGAAGGTATGAGTG
129 TAAAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGTCTTTCGAAGGTATGAGTG
* ** * * * *
258291 GCTATAAATGGACTTTTCTTGTCAATAGATGGTTTTTGCTTCACATTTCGAGAGGCAAAAATCCA
194 GCTATAAATGGACTTTTCTT-TCAATAGAT-GCTTTCACTTCATATTTCTA-ATGCAAACATCCA
* * * **
258356 ATTATGATATGCTTTAACCAAAAATGAAAAAAATTCAGCTTAAAATCATTTACAAGATTATAAAA
256 ATTATGATATGCTTTAA-CAAAAAAGGAAAAAATTCAACTTAAAATCATTTTTAAGATTATAAAA
* * * * * * *
258421 CCAT-T---TCAAGTAAGTAGTATTTCGAAAGCATGAGTGACGACAAATGGACTTTTCCTGTCAA
320 CCATGTAAAGCGAGTAACTAGTATTTTGAAAGCATGAGTGACCATAAATGGACTTTTCTTGTCAA
*
258482 TGGATGGCTTTTGC
385 TAGATGGCTTTTGC
258496 TTTAGGTTTC
Statistics
Matches: 1387, Mismatches: 282, Indels: 167
0.76 0.15 0.09
Matches are distributed among these distances:
669 55 0.04
670 18 0.01
671 107 0.08
672 121 0.09
673 39 0.03
674 7 0.01
675 54 0.04
676 58 0.04
677 400 0.29
678 237 0.17
679 120 0.09
680 126 0.09
681 36 0.03
682 9 0.01
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (667 bp):
CTAGCTTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTATCAATAGATGACTTTTGCTTC
ATGTCTCCCAAGACAAACATCCAATTATGATCTATTTTAGCCAAAAATGAAAAAAATTCAACCTA
AAATCATTTATAAGATTATAAAACCATTTAAAGCAAGTAACTAGTCTTTCGAAGGTATGAGTGGC
TATAAATGGACTTTTCTTTCAATAGATGCTTTCACTTCATATTTCTAATGCAAACATCCAATTAT
GATATGCTTTAACAAAAAAGGAAAAAATTCAACTTAAAATCATTTTTAAGATTATAAAACCATGT
AAAGCGAGTAACTAGTATTTTGAAAGCATGAGTGACCATAAATGGACTTTTCTTGTCAATAGATG
GCTTTTGCACTCATGTTTCTCAAAGCAAACATCAAATTATGATATGTTTTAATGAAAAAGGAATA
AGAATTCAACTTAAAATAATTCATAAGACTATAAATCATTCAAAGTAACTAACAAGTCTTGCAAG
CCATGAGTAACAAGAAATGAACTTTCTTGTCAATAGATGGCTTTCACTTCACATTTCCAAAGACA
AACATCCAATTATGATAATCTCTAACAAAAATAAAAAAAAAAGAACTTAAAATCATATATAAGAA
TCATTCAAAGTGACTAA
Found at i:260690 original size:171 final size:169
Alignment explanation
Indices: 260335--261012 Score: 655
Period size: 171 Copynumber: 4.0 Consensus size: 169
260325 AAAGCTAACA
* * * * * * *
260335 TATAAAACCATTTAAAATGACTAACTAGTATTTTGAAGGCATGAGTGGCCATAAATAGACTTTTC
1 TATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAATGACCATAAATGGAC-TTTC
* * * * *
260400 TTGTC-AAGGGATGGCTTTCGCTTCACGTTTCC-TGAGGCAAAGATGCAATTATGATCTATTTTA
65 TTGTCAAATGGATAGCTTTCGCTTCACGTTTCCATGAGGCAAACATCCAATTATGATCTGTTTTA
* * *
260463 ACAAAAAATAAAAAAAAATCAGCCTAAAATCATTTATAAGAT
130 A-TAAAAA-AAAAAAAAATCAACTTAAAATCATTTATAAGAT
** *
260505 TATAAAACCATTTAAAGTGAGTAATTAGGCTTTCGAAGGTATGAATGACCATAAATGGACTTCTC
1 TATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAATGACCATAAATGGACTT-TC
* * * * * * *
260570 TTGTC-AATTGATAGCTTTTGCATCATGTTTCCAT-AGCCAAATATCCAATTATGATATGTTTTA
65 TTGTCAAATGGATAGCTTTCGCTTCACGTTTCCATGAGGCAAACATCCAATTATGATCTGTTTTA
* *
260633 ACTAAAAATGAAAAAAAAATTAACTTAAAATCATTTACAAGAT
130 A-TAAAAA--AAAAAAAAATCAACTTAAAATCATTTATAAGAT
* * * * *
260676 TATAAAACCATTTAAAGTGAGTAAGTAGTATTTTGAAGACAT-AAGTTACTATAAATGGACCTTT
1 TATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAA-TGACCATAAATGGA-CTTT
* * * *
260740 CTTG-CAAATAGATAGCTCTCGCTTCATGTTT-CTTGAGGCAAACATCCAATTATGATCTGTTTT
64 CTTGTCAAATGGATAGCTTTCGCTTCACGTTTCCATGAGGCAAACATCCAATTATGATCTGTTTT
* *
260803 AATGAAAAAAGAAAACAATCAA-TCTAAAATCATTTATAAGAT
129 AAT-AAAAAAAAAAAAAATCAACT-TAAAATCATTTATAAGAT
* * * * *
260845 TAT-AAACCATTTAAAGAGAGTAACTT-GTCTTTC-AAGGGCATGAGTCACTATAAATGGACTTT
1 TATAAAACCATTTAAAGTGAGTAA-TTAGTATTTCGAA-GGCATGAATGACCATAAATGGACTTT
* * *
260907 ACTT-ACAAATGGATAGCTTTCGTTTCACATTTCTCA--AGGCAAACATCCAATTATGATCTGTT
64 -CTTGTCAAATGGATAGCTTTCGCTTCACGTTTC-CATGAGGCAAACATCCAATTATGATCTGTT
* * * *
260969 CTAATAAAAAAAGAAAAAAATTTAGCTTAAAATAATTTATAAGA
127 TTAATAAAAAAA-AAAAAAA-TCAACTTAAAATCATTTATAAGA
261013 CTTTTTTTTG
Statistics
Matches: 423, Mismatches: 66, Indels: 39
0.80 0.12 0.07
Matches are distributed among these distances:
167 12 0.03
168 103 0.24
169 52 0.12
170 117 0.28
171 136 0.32
172 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (169 bp):
TATAAAACCATTTAAAGTGAGTAATTAGTATTTCGAAGGCATGAATGACCATAAATGGACTTTCT
TGTCAAATGGATAGCTTTCGCTTCACGTTTCCATGAGGCAAACATCCAATTATGATCTGTTTTAA
TAAAAAAAAAAAAAATCAACTTAAAATCATTTATAAGAT
Found at i:261402 original size:170 final size:170
Alignment explanation
Indices: 261015--266783 Score: 3695
Period size: 172 Copynumber: 33.8 Consensus size: 170
261005 TTATAAGACT
* *
261015 TTTTTTTGTCAATGGATGGCTTTCT-CTTCATGATTC-TAGAGGCAAACATCCAATTATGATCTG
1 TTTTCTTGTCAATGGATGGCTTT-TGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTG
** * * *
261078 TTTTAATGAAAAATGAAAAACAATTCAACTTAAAAAATCATTTATAAGTTTATAAAATCATTGAA
64 TTTTAACAAAAAATGAAAAA-AATTCAACTT--AAAATCATTTATAAGATTATAAAACCATTTAA
* * * *
261143 AGCGAGTAAGTAGTCTTTCGAACGCATGAGTGACTATAAATGGAC
126 AGTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * ** ** * * *
261188 TTTTTTTGTCAATAGATGGCTTTCT-CTTCACATTTCCCAAGACAAACGTCCAATTATGATTTGT
1 TTTTCTTGTCAATGGATGGCTTT-TGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
** ** **
261252 TTTAATCAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGGCTAT-AAATTATTCGAAGT
65 TTTAA-CAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * *
261316 GAATAAATAGCT-TTTCGAAGGCATGAGTAACTATAAATGGAC
129 GAGTAACTAG-TATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
261358 TTTT-TTGGTCAATGGATGGCTTTTGCTTCATATTTCTTAAGACAAACATCCAATTACGATATAT
1 TTTTCTT-GTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
** * *
261422 TTTATTAAAAAATGAAAAAAAATT-AACTTAAAATCATTTATATGATTTTAAAACCATTTAGAA-
65 TTTAACAAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTA-AAG
* * * ** * *
261485 CGACTAACCAGTATTGAGAAGGCATAAGTGGCTATAAATGGA-
128 TGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * ** * ** * * *
261527 TTTTCCTTATCAACGGAT-GATTTTCACTTCACGTTTCCCATGGCAAATGTCTAATTATGATTTA
1 TTTT-CTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* * * * * *
261591 TTTTGA-AAAAAAT-AAAAAATTTCAACTTAAAATCATTTATAAGATTTTCAAACTATTTAAAGC
64 TTTTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* **
261654 GAGTAACTAGTCTTTCG-AGGCATGAGCAACTAT-AA--GAC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
*** **** ** * ** ** * * * ** *
261692 TATAAATAAAAAATAAAAAATGAACCTTCTTGTCAACA-GATAGCTTTCAGTTCACATTTGCAAT
1 T-TTTCTTGTCAAT---GGATG--GCTT-TTG-CTTCATG-TTTC-TTAAG-GCAAACATCCAAT
* * * *
261756 TATGATCT-TTTGTAACTAAAGAT-AACAAAAA-TCAACTTAAAATTATTTATAAGACTAT-AAA
55 TATGATCTGTTT-TAACAAAAAATGAA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAAA
* ** * * ** * * *
261817 TCATTTAAAGCAAGCAATTAGCCTTTC-AGAGGCATGAATGACTGTAAAT-GAA
118 CCATTTAAAGTGAGTAACTAGTATTTCGA-AGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
261869 TATTTTTTGTCAATAGATGACTTTTACTTCATGTTT-TCGAAGACAAATAGCCAAGTATGATCT-
1 T-TTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT-TAAGGCAAACATCCAATTATGATCTG
* *** ** * *
261932 ATTTAGGTAAAAATGATAAAAGGGTTTAACTTAAAATCATTTATAAGATTAT-AAGCCATTTAAA
64 TTTTAACAAAAAATGA-AAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
** * ** * * *
261996 GCAACTAACTAGTATTTTAAAGGTATGAGTGACAATAAATAGAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
** * * * * *
262040 TTTTCTTACCAATGCATAG-TTTTCGCTTCATGTGTC-TAGCGGCAAACATCCAATTATGATATG
1 TTTTCTTGTCAATGGATGGCTTTT-GCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTG
* ** * *
262103 TTTTAACCAAAAATGAAAAATAAATTCAACTTAAAATTGTTTACAAGATTATAAATCCATTTAAA
64 TTTTAACAAAAAATG-AAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * *
262168 GTGAGTAAGTAGTATTTCGAAGGCATTAGTGACAATAAATGGAT
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * *** * ** * *
262212 TTTTAC-TATCAATGAATGGCTTTCATTTTA-GATTTCCCAAGGCAAACATCCAATGATGATTTG
1 TTTT-CTTGTCAATGGATGGCTTTTGCTTCATG-TTTCTTAAGGCAAACATCCAATTATGATCTG
* * * *
262275 TTTTAACTAAAAATGAAAAAAAAATTTCAACCTAAAATCATTTATTAGATTATAAAACTATTTAA
64 TTTTAACAAAAAATG--AAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * *
262340 AGTGACTAACTAGTATTTCGAAGGTATGAGT-AGCCATAAATAGAC
126 AGTGAGTAACTAGTATTTCGAAGGCATGAGTGA-CTATAAATGGAC
* * * * * * * *
262385 TTTTCTTATCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGCAAAGATGCAATTATGATCTATT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * **
262450 TTAACAAAAAATGAGAAAAATTCAGCCTAAAATCATTTATAAGATTACAAAACTATTTAAAACGA
66 TTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGA
* ** * * * *
262515 GTAATTAGGCTTTCGAATGCATGAATGACTACAAATGGAT
131 GTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
262555 TTTTCTTATCAATTGATGGCTTTCG-TGTCATGTTTC-TAGAGGAAAACATCCAATTATGATATG
1 TTTTCTTGTCAATGGATGGCTTTTGCT-TCATGTTTCTTA-AGGCAAACATCCAATTATGATCTG
* * *
262618 TTTTAACCAAAAATGAAAAAGAATTCAACTGAAAAGCATTTATAAGATTATAAAACCATTTAAAG
64 TTTTAACAAAAAATGAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * * *
262683 CGAATAAGTAGTATTTCGAAGGCATGAGCGACTATAAATGGAC
128 TGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * *
262726 TTTTCTTG-CAAATGGATAGCTTTTGCTTAACGTTTCTTAAAGCAAACATCCAATTATGATCTAT
1 TTTTCTTGTC-AATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
** * ** *
262790 TTTAATGAAAAATGAAAAAAATGTTCAAATTAAAGCCATTTATAGGATTATAAAACCATTTAAAG
65 TTTAACAAAAAATGAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* *
262855 AGAGTAACTTA-TCTTTC-AAGGGCATGAGTGACTATAAATGGAC
128 TGAGTAAC-TAGTATTTCGAA-GGCATGAGTGACTATAAATGGAC
** * *
262898 TTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCTTGAA-GCAAACATCCAATGATGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTGT
* * ** * * * * *
262962 TTTAACCAAAAATGAAAAACAATT-AATTTTAAAAT-AGCCTACATGGTTCTAAAACCTTTTAAA
65 TTTAACAAAAAATGAAAAA-AATTCAA-CTTAAAATCA-TTTATAAGATTATAAAACCATTTAAA
* * * * * *
263025 ATGAGTAACAAGCCA-TTCTAAGGGATGAGTCACTATAAATGGAC
127 GTGAGTAACTAG-TATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * *
263069 TTTTCTTATCAATGGATAGCTTTTGCTTCATGTTTCTT-AGAGTAAACATCCAATCATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAG-GCAAACATCCAATTATGATCTGT
* * * * * * * * *
263133 TTCAAGAAAAACTGAAAAAAAAAATTCTACTTCAAATTATTTCTAAGATTATAAACCCATTGAAA
65 TTTAACAAAAAATG---AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
** * * **
263198 GCAAGTAACTAGCATTTCAAAGGCATGAGTGACTATAAATATAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * **** * * * * * * *
263242 TTCTCTAGTCAATGGATGGCTAGCACTTCATGCTT-ATAGAGACAAACATTCAGTTATAATCTAT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGT
* * * * * * * *
263306 TTTAGCTAAAAATAAAAAAAAATT-AGCTTAAAATCATTTATAAGACTAT-AAATCATTGAAAGC
65 TTTAACAAAAAAT-GAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* ** * * * * *
263369 GAGTAACAAGCCTTTCGAAAGCATAAGAGACTGTAAATGGGC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
263411 TTTTCTTGTCAATAGATGGCTTTTACTTCATGTTTCTTAAGACAAACATCTAGTCATGATTTGTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * *
263476 TTAGCTAAAAATGAAATAAAGTTTTAACTTAAAATCATTTATAAGATTATAAAATCATTT---G-
66 TTAACAAAAAATGAAA-AAA-ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * * ** * * * *
263537 AAGCAATTAGCCTTTCGAAGGCATGAATGATTGTAAATGGCC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * *** * ** * *
263579 TTTTCTTATTAATGAATGGCTTTCAATTCACT-TTCCCAAAGGCAAACATCCAATAATGATCTTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCA-TGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * ** * *
263643 TTTAAGCAAAACTGAA-AAAAAAAATTCAACTTAAAATCATTTATAAGATT-TTAAAGTACTAAA
65 TTTAA-CAAAA---AATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAA
* * * ** *
263706 AGTGAGTAACTAGTCTTTCGAAGGCATGGGCGACTATATTTTGAC
126 AGTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
263751 TTTTCTTGTCCATGGATGGC-TTT-CATCTCATGTTTTTTGAGGCAAAAATCAAATTATGATATG
1 TTTTCTTGTCAATGGATGGCTTTTGC-T-TCATGTTTCTTAAGGCAAACATCCAATTATGATCTG
* * * * * * * *
263814 TTTTAGCCAAACATGAAAAAAAAATTCAACTCAAAATTATTTATAGGATTATAAAATCATTGAAA
64 TTTTAACAAAAAATG--AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * *
263879 GCGAGTAACTAGTATTTTGAAGGCATGAGTGACTGTAAATGTAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * ** ** ** * * *
263923 TTCTCTAGTCAATGGAAGGCTGTCACTTCATACTTCTCGAGACAAACATCAAATTAGGATCTG-T
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * * *
263987 TTAACTAGAAATAAAAAAAATTTAAGTTAAAATCATTTATAAG-TGTA-CAAATCATTCAAAGTG
66 TTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGAT-TATAAAACCATTTAAAGTG
* *** ** *
264050 AGGAACTAACCTTTTAAAGGCATGAGTGACTGTAAATGGAC
130 AGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * *
264091 TTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTT-TTGAGGCAAACAACTAATCAAGATCTAT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATG-TTTCTTAAGGCAAACATCCAATTATGATCTGT
* * *** *
264155 TTTAGAC-AAAAATGAAAAAATGGTTTAACTTAAAATTGCTTATAAGATTATAAAACTATTTAAA
65 TTTA-ACAAAAAATGAAAAAA--ATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
** * * * * ** * * * *
264219 GAAATTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGGC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * ** * *
264263 TTTTCTTATCAATTGATGGATTTTGATTCACCTTT-TCAGAGGCAAACATCCAATTATGATCTAT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGT
** * * ** *
264327 TTTAACAAAAAATTTTAAAAAA-TCAACTTAAAATCATTTATAAAATT-TGAAAGTATTGAAAGT
65 TTTAACAAAAAA-TGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * **
264390 GAGTAACTAGTCTTTCAAAGGCATGAGCAACTATAACATGG-C
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAA-ATGGAC
* * * * * * * *
264432 TTTTGTTGTCAATGGATGGCTTTCGATTCTAT-TTT-TTGAGGCAAAAATCAAATTATTATATGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTC-ATGTTTCTTAAGGCAAACATCCAATTATGATCTGT
* * * * *
264495 TTTAGTC--AAAATGAAAAAAAATTCAACTTAAACTAATTTATAAGATTATAAAACCATTGAACG
65 TTTA-ACAAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* * *
264558 TGAGTAACTAGTATTTTGAAGGCATGAAT-AGCTATAAATGTAC
128 TGAGTAACTAGTATTTCGAAGGCATGAGTGA-CTATAAATGGAC
* * * ** * *
264601 TTCTCTAGTCAATGGATGGCTGTCACTTCATGCTT-TTAGAGACAAACATCCAATTATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGT
* * * * * * * *
264665 TTTAACTAGAAATAAGAAAAAATTCAACTTAAAATTATTTACAAGACTAT-AAACCATTCAAAGC
65 TTTAACAAAAAATGA-AAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
** * *
264729 GAGTAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGAC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
264771 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTTTGAGACAAATATCTAATCATGATCTGTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * *
264836 TTAACTAAAAATGAAAAAAAAAGTTTAACTAAAAATCATTTATAAAATTATAAAATCATTTAAAA
66 TTAACAAAAAATG--AAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
** * * * **
264901 TGAGTATTTAGCT-TTT-GAAAGTATGAATGTTTATAAATGGAC
128 TGAGTAACTAG-TATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * ** * * * *
264943 TTTTCTTATCAATTGATGCCTTTTGATTAACCTTTC-TAGAGGCAAACATCTAGTCATGATTTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGT
* * * * **
265007 TTTAATAAAAAATAAAAAAAAATTCAACTTAAAATCATTTGA-AAGATT-TTAAAGCATTGGAAG
65 TTTAACAAAAAAT-GAAAAAAATTCAACTTAAAATCATTT-ATAAGATTATAAAACCATTTAAAG
* * * * *
265070 TGAGTAACTAGTCTTTCGAATGCATGAG-CAATGATAAATTGAC
128 TGAGTAACTAGTATTTCGAAGGCATGAGTGACT-ATAAATGGAC
** * ** * * * *
265113 TTTTCTTGTCAATGGATGGCTTTCACTTCATGTCTT-TTGAGATAAAAATCAAATTATGATATCT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGT-TTCTTAAGGCAAACATCCAATTATGATCTGT
* * * * * * * *
265177 TTCAGCCAAAAATGAAAATAAAATTCAACTTAAAATCATTTA-CAGAATTATAAAACTAATGAGA
65 TTTAACAAAAAATG-AAA-AAAATTCAACTTAAAATCATTTATAAG-ATTATAAAACCATTTAAA
* * * * *
265241 GCGAATAACTAGTATTTTGAAGGCATGAGTGACAATAAATGTAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * **** * * *
265285 TTCTCTAGTCAACGGATGGCTGTTGCTTCACACATCTTGA-GAAAATCATCCAATAATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAA-CATCCAATTATGATCTGT
* * * * * * ** * *
265349 TTTAACTAGAAATAAAAAAAATTCACCTTAAAATCAATTATAAAACCAT-ACATCATTTAAAGTG
65 TTTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
* *
265413 AGTAACTTGCT-TTTTGAAGGCATGAGTGACTATAAATGGAC
130 AGTAACTAG-TATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * * * * *
265454 TTTTCTTATTAATGGATGGCTTTTGCTTCATATTTCCTATGACAAACATCTACA-CATGATCTAT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCA-ATTATGATCTGT
* * * * * *
265518 TTTAACCAAAAATAAAAAAAAAGGTTTAACTTATAATCATTTATAAGATTATAAAATCAGTTAAA
65 TTTAACAAAAAAT-GAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* * * * * * * *
265583 GCGAGTAATTAGTCTTTCAAAGGAATGAATGATTGTAAATGGAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * ** * *
265627 TTTTCTTATCAATTGATTGCTTTTGATTCACCTTT-ATAGAGGCAAACATCTAATTATGATCTGT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGT
* * * * * * *
265691 TTTGACCAAAAATAATAAAAAAAATGCAACTTCAAATCATTTATAAGATTATAAAATCATTGAAC
65 TTT-AAC-AAAA-AATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAA
* ** * *
265756 GTAAGTAACTAGGCTTTCGAAGGCCTGAGTGGCTATAAATGGAC
127 GTGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
265800 TTTTTTTGTCCATGGATGGCTTTTGCTTCAAGTTT-TCCAAGGGAAACATCCAATTATGATCTTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCT-TAAGGCAAACATCCAATTATGATCTGT
* * * * * *
265864 TTTATCGAAAAATGAAAAAAAATTCAACATAAAATAATTTATAAGATTATAAAACCATTGAAAGC
65 TTTAACAAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * ** * * *
265929 AAATAACTAGTCCTTCAAAGGCATGAGTGGCTATAAATGAAC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * * * *
265971 TTTTCTTGTCAATCGATGGCTTTTGCTTCACGTTTCTTGAGGTAAATATCCAATTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* *
266036 TT---AATAAA--AAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGA
66 TTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGA
* * *
266096 GTAACTAATATTTTGAAGGCATGAGTGGCTAGATAAATGGAC
131 GTAACTAGTATTTCGAAGGCATGAGTGACT--ATAAATGGAC
* * * * * *
266138 TTTTCTTATCAATGGATGGCTTTCGCTT--TGCTTTTCCTAAGTCAAACATTCAATTATGATTTG
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATG--TTTCTTAAGGCAAACATCCAATTATGATCTG
* * * * * *
266201 -TTTAATAAAAAGTG-AAAAAATTCAATTTAAAATCATTCACAAGATTATAAAACCATTTAAATT
64 TTTTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* *
266264 GAGTAACTAGTATTTTC-AAGGCATGAGTGAATATAAATGTA-
129 GAGTAACTAGTA-TTTCGAAGGCATGAGTGACTATAAATGGAC
* ** * ** * *
266305 TTTGT-TTAGTCAATGGATGGCTGTCACTTCATGGTTCTTGAA-ATAAATATCCAATTATGATCA
1 TTT-TCTT-GTCAATGGATGGCTTTTGCTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCT
*** * * ** * *
266368 GTTTTAACCTGAAATAAAAAAAATTCAACTTAAAATCATTTATATGACAAT-AAATCATTCAAAG
63 GTTTTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAG
* ** * *
266432 TGAATAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGAC
128 TGAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * *** * * *
266475 TTTTCTTATCAATGGATGGCTTGTGCTTCATGTTTCCCGAGGCAAACATCTAATCATGATCTATT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * **
266540 TTAGCCAAAAATAAAAAAAATGTTTAACTTATAATCATTTATAAGATTATAAAATCATTTAAAAC
66 TTAACAAAAAATGAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGT
* * * * **
266605 GAGTAAGTAGTCTTTCGAAGGCATGAATGATTGCAAATGGAC
129 GAGTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
* * * ** * * *
266647 TTTTCTTATCAATTGATGGCTTTTGATTCACCTTTCTAAAGGTAAACATCCAATTATGATATGTT
1 TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
* * * * * * **
266712 TTGACCAAAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATTAAATCATTGAAAGCA
66 TTAACAAAAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTG
266777 AGTAACT
130 AGTAACT
266784 GGGCTTTCAA
Statistics
Matches: 4342, Mismatches: 1055, Indels: 400
0.75 0.18 0.07
Matches are distributed among these distances:
164 2 0.00
165 76 0.02
166 7 0.00
167 103 0.02
168 364 0.08
169 610 0.14
170 856 0.20
171 741 0.17
172 860 0.20
173 579 0.13
174 72 0.02
175 54 0.01
176 9 0.00
177 9 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (170 bp):
TTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTT
TTAACAAAAAATGAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGA
GTAACTAGTATTTCGAAGGCATGAGTGACTATAAATGGAC
Found at i:261441 original size:454 final size:450
Alignment explanation
Indices: 260607--261463 Score: 1039
Period size: 454 Copynumber: 1.9 Consensus size: 450
260597 TTTCCATAGC
*
260607 CAAATATCCAATTATGATATGTTTTAACTAAAAATGAAAAAAAAATTAACTTAAAATCATTTACA
1 CAAACATCCAATTATGATATGTTTTAACTAAAAATGAAAAAAAAATTAACTTAAAATCATTTACA
* * * *
260672 AGATTATAAAACCATTTAAAGTGAGTAAGTAGTATTTTGAAGACATAAGTTACTATAAATGGACC
66 AGATTATAAAACCATTGAAAGCGAGTAAGTAGTATTTCGAAGACATAAGTGACTATAAATGGACC
** *** *
260737 TTTCTTGCAAATAGATAGCTCTCGCTTCATGTTTCTTGAGGCAAACATCCAATTATGATCTGTTT
131 TTTCTTGCAAATAGATAGCTCTCGCTTCACATTTCCCAAGACAAACATCCAATTATGATCTGTTT
* * * * *
260802 TAATGAAAAAAGAAAACAATCAATCTAAAATCATTTATAAGATTATAAACCATTTAAAGAGAGTA
196 TAATCAAAAAAGAAAAAAATCAATCTAAAATCATTTATAAGACTATAAACCATTCAAAGAGAATA
* * * *
260867 ACTTGTCTTTCAAGGGCATGAGTCACTATAAATGGACTTTACTTACAAATGGATAGCTTTCGTTT
261 AATAGTCTTTCAAGGGCATGAGTAACTATAAATGGACTTTACTTACAAATGGATAGCTTTCGCTT
* * * * * *
260932 CACATTTCTCAAGGCAAACATCCAATTATGATCTGTTCTAATAAAAAAAGAAAAAAATTTAGCTT
326 CACATTTCTCAAGACAAACATCCAATTACGATATATTCTAATAAAAAAAGAAAAAAAATTAACTT
260997 AAAATAATTTATAAGACTTTTTTTTGTCAATGGATGGCTTTCTCTTCATGATTCTAGAGG
391 AAAATAATTTATAAGACTTTTTTTTGTCAATGGATGGCTTTCTCTTCATGATTCTAGAGG
* *
261057 CAAACATCCAATTATGATCTGTTTTAA-TGAAAAATG-AAAAACAATTCAACTTAAAAAATCATT
1 CAAACATCCAATTATGATATGTTTTAACT-AAAAATGAAAAAAAAATT-AACTT--AAAATCATT
* * * * *
261120 TATAAGTTTATAAAATCATTGAAAGCGAGTAAGTAGTCTTTCGAACG-CATGAGTGACTATAAAT
62 TACAAGATTATAAAACCATTGAAAGCGAGTAAGTAGTATTTCGAA-GACATAAGTGACTATAAAT
* * * * * *
261184 GGACTTTTTTTGTC-AATAGATGGCTTTCTCTTCACATTTCCCAAGACAAACGTCCAATTATGAT
126 GGACCTTTCTTG-CAAATAGATAGCTCTCGCTTCACATTTCCCAAGACAAACATCCAATTATGAT
* * ** *
261248 TTGTTTTAATCAAAAAATGAAAAAAATTCAA-CTTAAAATCATTTATAAGGCTATAAATTATTCG
190 CTGTTTTAATCAAAAAA-GAAAAAAA-TCAATC-TAAAATCATTTATAAGACTATAAACCATTCA
* * *
261312 AAGTGAATAAATAG-CTTTTCGAA-GGCATGAGTAACTATAAATGGACTTT-TTTGGTC-AATGG
252 AAGAGAATAAATAGTC-TTTC-AAGGGCATGAGTAACTATAAATGGACTTTACTT--ACAAATGG
* * * * * * *
261373 ATGGCTTTTGCTTCATATTTCTTAAGACAAACATCCAATTACGATATATTTTATTAAAAAATGAA
313 ATAGCTTTCGCTTCACATTTCTCAAGACAAACATCCAATTACGATATATTCTAATAAAAAAAGAA
*
261438 AAAAAATTAACTTAAAATCATTTATA
378 AAAAAATTAACTTAAAATAATTTATA
261464 TGATTTTAAA
Statistics
Matches: 339, Mismatches: 55, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
449 10 0.03
450 37 0.11
452 127 0.37
453 13 0.04
454 149 0.44
455 3 0.01
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (450 bp):
CAAACATCCAATTATGATATGTTTTAACTAAAAATGAAAAAAAAATTAACTTAAAATCATTTACA
AGATTATAAAACCATTGAAAGCGAGTAAGTAGTATTTCGAAGACATAAGTGACTATAAATGGACC
TTTCTTGCAAATAGATAGCTCTCGCTTCACATTTCCCAAGACAAACATCCAATTATGATCTGTTT
TAATCAAAAAAGAAAAAAATCAATCTAAAATCATTTATAAGACTATAAACCATTCAAAGAGAATA
AATAGTCTTTCAAGGGCATGAGTAACTATAAATGGACTTTACTTACAAATGGATAGCTTTCGCTT
CACATTTCTCAAGACAAACATCCAATTACGATATATTCTAATAAAAAAAGAAAAAAAATTAACTT
AAAATAATTTATAAGACTTTTTTTTGTCAATGGATGGCTTTCTCTTCATGATTCTAGAGG
Found at i:262258 original size:172 final size:171
Alignment explanation
Indices: 261023--266783 Score: 3717
Period size: 170 Copynumber: 33.8 Consensus size: 171
261013 CTTTTTTTTG
* * **
261023 TCAATGGATGGCTTTCTCTTCATGATTC-TAGAGGCAAACATCCAATTATGATCTGTTTTAATGA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * *
261087 AAAATGAAAAACAATTCAACTTAAAAAATCATTTATAAGTTTATAAAAT-CATTGAAAGCGAGTA
65 AAAATGAAAAAAAATTCAACTT--AAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTA
* * * *
261151 AGTAGTCTTTCGAACGCATGAGTGACTATAAATGGACTTTTTTTG
127 ACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * ** ** * * * *
261196 TCAATAGATGGCTTTCTCTTCACATTTCCCAAGACAAACGTCCAATTATGATTTGTTTTAATCAA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAA-CCA
** * ** * *
261261 AAAATG-AAAAAAATTCAACTTAAAATCATTTATAAGGCTATAAAT-TATTCGAAGTGAATAAAT
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAACT
* *
261324 AG-CTTTTCGAAGGCATGAGTAACTATAAATGGACTTTT-TTGG
130 AGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTT-A
** * * * * * ***
261366 TCAATGGATGGCTTTTGCTTCATATTTCTTAAGACAAACATCCAATTACGATATATTTTATTAAA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
* * * * * *
261431 AAATGAAAAAAAATT-AACTTAAAATCATTTATATGATTTTAAAACCATTTAGAA-CGACTAACC
66 AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTA-AAGTGAGTAACT
* ** * *
261494 AGTATTGAGAAGGCATAAGTGGCTATAAATGGA-TTTTCCTTA
130 AGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-CTTA
* ** * ** * ** * * *
261536 TCAACGGATGATTTTCACTTCACGTTTCCCATGGCAAATGTCTAATTATGATTTATTTTGAA--A
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTT-AACCA
* * * *
261599 AAAAT--AAAAAATTTCAACTTAAAATCATTTATAAGATTTTCAAA-CTATTTAAAGCGAGTAAC
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTAAC
** *** *
261661 TAGTCTTTCG-AGGCATGAGCAACTAT-AA--GACTATAAATAA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACT-TTTCTTA
** ** * * * * ** * * * ** *
261701 AAAATAAAAAATGAACCTTC-TTGTCAACAGATAGCTTTCAGTTCACATTTGCAATTATGATCT-
1 TCAAT---GGATG-GCTTTCACT-TC-A-TG-TTTC-TTAAG-GCAAACATCCAATTATGATCTG
* * * * *
261764 TTTGTAACTAAAGAT-AACAAAAA-TCAACTTAAAATTATTTATAAGACTATAAAT-CATTTAAA
56 TTT-TAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAA
** * * * * * * * *
261826 GCAAGCAATTAGCCTTTC-AGAGGCATGAATGACTGTAAAT-GAATATTTTTTG
120 GTGAGTAACTAGTCTTTCGA-AGGCATGAGTGACTATAAATGGACT-TTTCTTA
* * * * * * * * * ***
261878 TCAATAGATGACTTTTACTTCATGTTT-TCGAAGACAAATAGCCAAGTATGATCT-ATTTAGGTA
1 TCAATGGATGGCTTTCACTTCATGTTTCT-TAAGGCAAACATCCAATTATGATCTGTTTTAACCA
*** * * ** *
261941 AAAATGATAAAAGGGTTTAACTTAAAATCATTTATAAGATTAT-AAGCCATTTAAAGCAACTAAC
65 AAAATGA-AAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* ** * * *
262005 TAGTATTTTAAAGGTATGAGTGACAATAAATAGACTTTTCTTA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * * * * *
262048 CCAATGCATAGTTTTCGCTTCATGTGTC-TAGCGGCAAACATCCAATTATGATATGTTTTAACCA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACCA
** * *
262112 AAAATGAAAAATAAATTCAACTTAAAATTGTTTACAAGATTATAAATCCATTTAAAGTGAGTAAG
65 AAAATGAAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* * * *
262177 TAGTATTTCGAAGGCATTAGTGACAATAAATGGATTTTTAC-TA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTT-CTTA
* * * ** * * *
262220 TCAATGAATGGCTTTCATTTTA-GATTTCCCAAGGCAAACATCCAATGATGATTTGTTTTAACTA
1 TCAATGGATGGCTTTCACTTCATG-TTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * * *
262284 AAAATGAAAAAAAAATTTCAACCTAAAATCATTTATTAGATTATAAAACTATTTAAAGTGACTAA
65 AAAATG-AAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* * * *
262349 CTAGTATTTCGAAGGTATGAGT-AGCCATAAATAGACTTTTCTTA
128 CTAGTCTTTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTA
* * * * * * * *
262393 TCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGCAAAGATGCAATTATGATCTATTTTAACAAA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
* * * * * * ** *
262458 AAATG-AGAAAAATTCAGCCTAAAATCATTTATAAGATTACAAAACTATTTAAAACGAGTAATTA
66 AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAACTA
* * * * *
262522 GGCTTTCGAATGCATGAATGACTACAAATGGATTTTTCTTA
131 GTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * *
262563 TCAATTGATGGCTTTC-GTGTCATGTTTC-TAGAGGAAAACATCCAATTATGATATGTTTTAACC
1 TCAATGGATGGCTTTCACT-TCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * * * *
262626 AAAAATGAAAAAGAATTCAACTGAAAAGCATTTATAAGATTATAAAACCATTTAAAGCGAATAAG
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* *
262691 TAGTATTTCGAAGGCATGAGCGACTATAAATGGACTTTTCTT-
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * ** * * * * **
262733 GCAAATGGATAGCTTTTGCTTAACGTTTCTTAAAGCAAACATCCAATTATGATCTATTTTAATGA
1 TC-AATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * ** * * *
262798 AAAATGAAAAAAATGTTCAAATTAAAGCCATTTATAGGATTATAAAACCATTTAAAGAGAGTAAC
65 AAAATGAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
*
262863 TTA-TCTTTC-AAGGGCATGAGTGACTATAAATGGACTTTTCTTG
129 -TAGTCTTTCGAA-GGCATGAGTGACTATAAATGGACTTTTCTTA
** ** * *
262906 TCAATGGATGGCTTTTGCTTCACATTTCTTGAA-GCAAACATCCAATGATGATTTGTTTTAACCA
1 TCAATGGATGGCTTTCACTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * ** * * * * * * *
262970 AAAATGAAAAACAATT-AATTTTAAAAT-AGCCTACATGGTTCTAAAACCTTTTAAAATGAGTAA
65 AAAATGAAAAAAAATTCAA-CTTAAAATCA-TTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* * * * * *
263033 CAAGCCATTCTAAGGGATGAGTCACTATAAATGGACTTTTCTTA
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* ** * * * *
263077 TCAATGGATAGCTTTTGCTTCATGTTTCTT-AGAGTAAACATCCAATCATGATCTGTTTCAA-GA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAG-GCAAACATCCAATTATGATCTGTTTTAACCA
* * * * * * **
263140 AAAACTGAAAAAAAAAATTCTACTTCAAATTATTTCTAAGATTATAAACCCATTGAAAGCAAGTA
65 AAAA-TG--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTA
* ** *
263205 ACTAG-CATTTCAAAGGCATGAGTGACTATAAATATACTTCTC-TA
127 ACTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
** * * * * * * * * *
263249 GTCAATGGATGGCTAGCACTTCATGCTT-ATAGAGACAAACATTCAGTTATAATCTATTTTAGCT
1 -TCAATGGATGGCTTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * *
263313 AAAAATAAAAAAAAATT-AGCTTAAAATCATTTATAAGACTATAAAT-CATTGAAAGCGAGTAAC
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* * * * * * * *
263376 AAGCCTTTCGAAAGCATAAGAGACTGTAAATGGGCTTTTCTTG
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * * * * * *
263419 TCAATAGATGGCTTTTACTTCATGTTTCTTAAGACAAACATCTAGTCATGATTTGTTTTAGCTAA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
** * * * *
263484 AAATGAAATAAAGTTTTAACTTAAAATCATTTATAAGATTATAAAAT-CATTT---G-AAGCAAT
66 AAATGAAA-AAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTAAC
* * * * *
263544 TAGCCTTTCGAAGGCATGAATGATTGTAAATGGCCTTTTCTTA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * ** * * *
263587 TTAATGAATGGCTTTCAATTCACT-TTCCCAAAGGCAAACATCCAATAATGATCTTTTTTAAGCA
1 TCAATGGATGGCTTTCACTTCA-TGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * *
263651 AAACTGAAAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGT--ACTAAAAGTGAGTA
65 AAAATG--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAA-TCCATTTAAAGTGAGTA
* * ** * *
263714 ACTAGTCTTTCGAAGGCATGGGCGACTATATTTTGACTTTTCTTG
127 ACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * * * *
263759 TCCATGGATGGCTTTCA-TCTCATGTTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCA
1 TCAATGGATGGCTTTCACT-TCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * * * *
263823 AACATGAAAAAAAAATTCAACTCAAAATTATTTATAGGATTATAAAAT-CATTGAAAGCGAGTAA
65 AAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTAA
* * * * *
263887 CTAGTATTTTGAAGGCATGAGTGACTGTAAATGTACTTCTC-TA
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * ** ** * * * *
263930 GTCAATGGAAGGCTGTCACTTCATACTTCTCGAGACAAACATCAAATTAGGATCTG-TTTAACTA
1 -TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * * * *
263994 GAAAT-AAAAAAAATTTAAGTTAAAATCATTTATAAG-TGTACAAAT-CATTCAAAGTGAGGAAC
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGAT-TATAAATCCATTTAAAGTGAGTAAC
** ** *
264056 TAACCTTTTAAAGGCATGAGTGACTGTAAATGGACTTTTCTTA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
** * * * * * *
264099 TCAATGGATGGCTTTTGCTTCATGCTTT-TTGAGGCAAACAACTAATCAAGATCTATTTTAGA-C
1 TCAATGGATGGCTTTCACTTCATG-TTTCTTAAGGCAAACATCCAATTATGATCTGTTTTA-ACC
** * *** * * ** *
264162 AAAAATGAAAAAATGGTTTAACTTAAAATTGCTTATAAGATTATAAAACTATTTAAAGAAATTAA
64 AAAAATGAAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* * ** * * * *
264227 TTAGTCTTTCAAAGATATGAATGATTGTAAATGGGCTTTTCTTA
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * ** * * *
264271 TCAATTGATGGATTTTGA-TTCACCTTT-TCAGAGGCAAACATCCAATTATGATCTATTTTAACA
1 TCAATGGATGG-CTTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
*** * *
264334 AAAAATTTTAAAAAA-TCAACTTAAAATCATTTATAAAATT-TGAAAGT--ATTGAAAGTGAGTA
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAA-TCCATTTAAAGTGAGTA
* ** * *
264395 ACTAGTCTTTCAAAGGCATGAGCAACTATAACATGG-CTTTTGTTG
127 ACTAGTCTTTCGAAGGCATGAGTGACTATAA-ATGGACTTTTCTTA
* * * * * **
264440 TCAATGGATGGCTTTCGA-TTCTAT-TTT-TTGAGGCAAAAATCAAATTATTATATGTTTTAGTC
1 TCAATGGATGGCTTTC-ACTTC-ATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * *
264502 -AAAATGAAAAAAAATTCAACTTAAACTAATTTATAAGATTATAAAACCATTGAACGTGAGTAAC
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* * * * *
264566 TAGTATTTTGAAGGCATGAAT-AGCTATAAATGTACTTCTC-TA
129 TAGTCTTTCGAAGGCATGAGTGA-CTATAAATGGACTTTTCTTA
* * * *
264608 GTCAATGGATGGCTGTCACTTCATGCTT-TTAGAGACAAACATCCAATTATGATCTGTTTTAACT
1 -TCAATGGATGGCTTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * * *
264672 AGAAAT-AAGAAAAAATTCAACTTAAAATTATTTACAAGACTATAAA-CCATTCAAAGCGAGTAA
64 AAAAATGAA-AAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* * * *
264735 CTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTG
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
** * * * * * * *
264779 TCAATGGATGGCTTTTGCTTCATGTTTTTTGAGACAAATATCTAATCATGATCTGTTTTAACTAA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
* * * * *
264844 AAATGAAAAAAAAAGTTTAACTAAAAATCATTTATAAAATTATAAAAT-CATTTAAAATGAGTAT
66 AAATG-AAAAAAAA-TTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTAA
* * * * * **
264908 TTAG-CTTTTGAAAGTATGAATGTTTATAAATGGACTTTTCTTA
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * ** * * * * **
264951 TCAATTGATGCCTTTTGA-TTAACCTTTC-TAGAGGCAAACATCTAGTCATGATTTGTTTTAATA
1 TCAATGGATGGC-TTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
* * * **
265014 AAAAATAAAAAAAAATTCAACTTAAAATCATTTGA-AAGATTTTAAA-GCATTGGAAGTGAGTAA
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTT-ATAAGATTATAAATCCATTTAAAGTGAGTAA
* * * * *
265077 CTAGTCTTTCGAATGCATGAG-CAATGATAAATTGACTTTTCTTG
128 CTAGTCTTTCGAAGGCATGAGTGACT-ATAAATGGACTTTTCTTA
* ** * * * * * *
265121 TCAATGGATGGCTTTCACTTCATGTCTT-TTGAGATAAAAATCAAATTATGATATCTTTCAGCCA
1 TCAATGGATGGCTTTCACTTCATGT-TTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * * * * * *
265185 AAAATGAAAATAAAATTCAACTTAAAATCATTTA-CAGAATTATAAAACTAATGAGAGCGAATAA
65 AAAATGAAAA-AAAATTCAACTTAAAATCATTTATAAG-ATTATAAATCCATTTAAAGTGAGTAA
* * * * *
265249 CTAGTATTTTGAAGGCATGAGTGACAATAAATGTACTTCTC-TA
128 CTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * **** * * *
265292 GTCAACGGATGGCTGTT-GCTTCACACATCTTGA-GAAAATCATCCAATAATGATCTGTTTTAAC
1 -TCAATGGATGGCT-TTCACTTCATGTTTCTTAAGGCAAA-CATCCAATTATGATCTGTTTTAAC
* * * * * ** *
265355 TAGAAAT-AAAAAAAATTCACCTTAAAATCAATTATAAAACCATACAT-CATTTAAAGTGAGTAA
63 CAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* *
265418 CTTG-CTTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
128 CTAGTC-TTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* ** * * * * * * *
265462 TTAATGGATGGCTTTTGCTTCATATTTCCTATGACAAACATCTACA-CATGATCTATTTTAACCA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCA-ATTATGATCTGTTTTAACCA
* * * * *
265526 AAAATAAAAAAAAAGGTTTAACTTATAATCATTTATAAGATTATAAAAT-CAGTTAAAGCGAGTA
65 AAAATGAAAAAAAA--TTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTA
* * * * * *
265590 ATTAGTCTTTCAAAGGAATGAATGATTGTAAATGGACTTTTCTTA
127 ACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * ** * * *
265635 TCAATTGATTGCTTTTGA-TTCACCTTT-ATAGAGGCAAACATCTAATTATGATCTGTTTTGACC
1 TCAATGGATGGC-TTTCACTTCATGTTTCTTA-AGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * * *
265698 AAAAATAATAAAAAAAATGCAACTTCAAATCATTTATAAGATTATAAAAT-CATTGAACGTAAGT
64 AAAAAT--GAAAAAAAATTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGT
* * * * *
265762 AACTAGGCTTTCGAAGGCCTGAGTGGCTATAAATGGACTTTTTTTG
126 AACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* ** * * * * * *
265808 TCCATGGATGGCTTTTGCTTCAAGTTT-TCCAAGGGAAACATCCAATTATGATCTTTTTTATCGA
1 TCAATGGATGGCTTTCACTTCATGTTTCT-TAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * * * ** *
265872 AAAATGAAAAAAAATTCAACATAAAATAATTTATAAGATTATAAAACCATTGAAAGCAAATAACT
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAACT
* * * * *
265937 AGTCCTTCAAAGGCATGAGTGGCTATAAATGAACTTTTCTTG
130 AGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* ** * * * * *
265979 TCAATCGATGGCTTTTGCTTCACGTTTCTTGAGGTAAATATCCAATTATGATATGTTTT----AA
1 TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
* * *
266040 TAA--AAAAAAAATTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTA
66 AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAACTA
* * * *
266103 ATATTTTGAAGGCATGAGTGGCTAGATAAATGGACTTTTCTTA
131 GTCTTTCGAAGGCATGAGTGACT--ATAAATGGACTTTTCTTA
* * * * * *
266146 TCAATGGATGGCTTTCGCTT--TGCTTTTCCTAAGTCAAACATTCAATTATGATTTG-TTTAA-T
1 TCAATGGATGGCTTTCACTTCATG--TTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACC
* * * * *
266207 AAAAAGTG--AAAAAATTCAATTTAAAATCATTCACAAGATTATAAAACCATTTAAATTGAGTAA
64 AAAAA-TGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAA
* * *
266270 CTAGTATTTTC-AAGGCATGAGTGAATATAAATGTA-TTTGT-TTA
128 CTAGT-CTTTCGAAGGCATGAGTGACTATAAATGGACTTT-TCTTA
* * ** * *
266313 GTCAATGGATGGCTGTCACTTCATGGTTCTTGAA-ATAAATATCCAATTATGATCAGTTTTAACC
1 -TCAATGGATGGCTTTCACTTCATGTTTCTT-AAGGCAAACATCCAATTATGATCTGTTTTAACC
** * ** * *
266377 TGAAAT-AAAAAAAATTCAACTTAAAATCATTTATATGACAATAAAT-CATTCAAAGTGAATAAC
64 AAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAAC
* * *
266440 TAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTA
129 TAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* *** * * * *
266483 TCAATGGATGGCTTGT-GCTTCATGTTTCCCGAGGCAAACATCTAATCATGATCTATTTTAGCCA
1 TCAATGGATGGCTT-TCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * **
266547 AAAAT-AAAAAAAATGTTTAACTTATAATCATTTATAAGATTATAAAAT-CATTTAAAACGAGTA
65 AAAATGAAAAAAAA--TTCAACTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAGTA
* * * **
266610 AGTAGTCTTTCGAAGGCATGAATGATTGCAAATGGACTTTTCTTA
127 ACTAGTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * ** * * * *
266655 TCAATTGATGGCTTTTGA-TTCACCTTTCTAAAGGTAAACATCCAATTATGATATGTTTTGACCA
1 TCAATGGATGGC-TTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCA
* * **
266719 AAAATGAAAAAAAATTCAATTTAAAATCATTTATAAGATTATTAAAT-CATTGAAAGCAAGTAAC
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTA-TAAATCCATTTAAAGTGAGTAAC
266783 T
129 T
266784 GGGCTTTCAA
Statistics
Matches: 4336, Mismatches: 1042, Indels: 422
0.75 0.18 0.07
Matches are distributed among these distances:
164 2 0.00
165 77 0.02
166 6 0.00
167 109 0.03
168 365 0.08
169 583 0.13
170 883 0.20
171 738 0.17
172 855 0.20
173 585 0.13
174 68 0.02
175 49 0.01
176 7 0.00
177 9 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (171 bp):
TCAATGGATGGCTTTCACTTCATGTTTCTTAAGGCAAACATCCAATTATGATCTGTTTTAACCAA
AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAGTAACTA
GTCTTTCGAAGGCATGAGTGACTATAAATGGACTTTTCTTA
Found at i:264687 original size:680 final size:680
Alignment explanation
Indices: 261956--266783 Score: 3684
Period size: 681 Copynumber: 7.1 Consensus size: 680
261946 GATAAAAGGG
* ** * ** * *** * *
261956 TTTAACTTAAAATCATTTATAAGATTATAAGCCATTTAAAGCAACTAACTAGTATTTTAAAGGTA
1 TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGCA
** * * * * * * * *
262021 TGAGTGACAATAAATAGACTTTTCTTACCAATGCATAG-TTTTCGCTTCATG-TGTCTAGCGGCA
66 TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTT-GCTTCATGCT-TTTTGAGACA
* * * * * * * ** *
262084 AACATCCAATTATGATATGTTTTAACCAAAAATGAAAAATAA-ATTCAACTTAAAATTGTTTACA
129 AACATCTAATCATGATCTATTTTAACTAAAAATGAAAAA-AAGGTTTAACTTAAAATCATTTATA
** * * * ** * * *** *
262148 AGATTAT-AAATCCATTTAAAGTGAGTAAGTAGTATTTCGAAGGCATTAGTGACAATAAATGGAT
193 AGATTATAAAAT-CATTTAAAGAAAGTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGAC
* * ** ** * *
262212 TTTTAC-TATCAA-TGAATGGC-TTTCATTTTAGATTTCCCA-AGGCAAACATCCAATGATGATT
257 TTTT-CTTATCAATTG-ATGGCTTTTGA-TTCACCTTTATCAGAGGCAAACATCCAATTATGATC
* * * * * * *
262273 TGTTTTAACTAAAAATGAAAAAAAAATTTCAACCTAAAATCATTTATTAGATTATAAAACTATTT
319 TGTTTTAACAAAAAAT-TAAAAAAAA-TTCAACTTAAAATCATTTATAAGATT-TTAAAGTATTG
* * * * * * *
262338 AAAGTGACTAACTAGTATTTCGAAGGTATGAGTAGCCATAAATAGACTTTTCTTATCAATGGATG
381 AAAGTGAGTAACTAGTCTTTCGAAGGCATGAGCAACTATAAAT-GACTTTTCTTGTCAATGGATG
* ** * * * * * *
262403 GCTTTCGCTTC-ACGTTTCCTGAGGCAAAGATGC-AATTATGATCTATTTTAACAAAAAATG-AG
445 GCTTTC-ATTCTA--TTTTTTGAGGCAAAAAT-CAAATTATGATATGTTTTAGCCAAAAATGAAA
* * * * * * * * ** *
262465 AAAAATTCAGCCTAAAATCATTTATAAGATTACAAAACTATTTAAAACGAGTAATTAGGCTTTCG
506 AAAAATTCAACTTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTG
* * * * * * * * *
262530 AATGCATGAATGACTACAAATGGATTTTTCTTA-TCAATTGATGGCTTTC-GTGTCATG-TTTCT
571 AAGGCATGAGTGACTATAAATGTACTTCTC-TAGTCAATGGATGGCTGTCACT-TCATGCTTT-T
* * * *
262592 AGAGGA-AAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAGAA
633 AGA-GACAAACATCCAATTATGATCTGTTTTAACTAGAAAT-AAAAAAAA
* * * * * * * * * *** *
262641 TTCAACTGAAAAGCATTTATAAGATTATAAAACCATTTAAAGCGAATAAGTAGTATTTCGAAGGC
1 TTTAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGC
* * * * * * *
262706 ATGAGCGACTATAAATGGACTTTTCTT-GCAAATGGATAGCTTTTGCTTAACG-TTTCTT-AAAG
65 ATGAGTGACTGTAAATGGACTTTTCTTATC-AATGGATGGCTTTTGCTTCATGCTTT-TTGAGA-
* * * * * **
262768 CAAACATCCAATTATGATCTATTTTAA-TGAAAAATGAAAAAAATGTTCAAATTAAAGCCATTTA
127 CAAACATCTAATCATGATCTATTTTAACT-AAAAATGAAAAAAAGGTTTAACTTAAAATCATTTA
* * * * ** * * *
262832 TAGGATTATAAAACCATTTAAAGAGAGTAACTTA-TCTTTCAAGGGCATGAGTGACTATAAATGG
191 TAAGATTATAAAATCATTTAAAGAAAGTAA-TTAGTCTTTCAAAGATATGAATGATTGTAAATGG
* * * * * * * * *
262896 ACTTTTCTTGTCAATGGATGGCTTTTGCTTCACATTTCT-TGAAGCAAACATCCAATGATGATTT
255 ACTTTTCTTATCAATTGATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCT
* * * * ** * * * * * *
262960 GTTTTAACCAAAAATGAAAAACAATT-AATTTTAAAAT-AGCCTACATGGTTCTAAAACCT-TTT
320 GTTTTAACAAAAAATTAAAAAAAATTCAA-CTTAAAATCA-TTTATAAGATT-TTAAA-GTATTG
* * * * * * *
263022 AAAATGAGTAACAAGCCATTCTAAGGGATGAGTC-ACTATAAATGGACTTTTCTTATCAATGGAT
381 AAAGTGAGTAACTAGTCTTTCGAAGGCATGAG-CAACTATAAAT-GACTTTTCTTGTCAATGGAT
* * * * * * *
263086 AGCTTTTGC-TTC-ATGTTTCTT-AGAGTAAACATCCAATCATGATCTGTTTCAAG--AAAAACT
444 GGC-TTT-CATTCTAT-TTT-TTGAG-GCAAAAATCAAATTATGATATGTTT-TAGCCAAAAA-T
* * * * * * *
263146 GAAAAAAAAAATTCTACTTCAAATTATTTCTAAGATTATAAACCCATTGAAAGCAAGTAACTAGC
502 G--AAAAAAAATTCAACTTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGT
** *
263211 ATTTCAAAGGCATGAGTGACTATAAATATACTTCTCTAGTCAATGGATGGCTAG-CACTTCATGC
565 ATTTTGAAGGCATGAGTGACTATAAATGTACTTCTCTAGTCAATGGATGGCT-GTCACTTCATGC
* * * * * * *
263275 TTATAGAGACAAACATTCAGTTATAATCTATTTTAGCTAAAAATAAAAAAAA
629 TTTTAGAGACAAACATCCAATTATGATCTGTTTTAACTAGAAATAAAAAAAA
* * * * * *
263327 ATTAGCTTAAAATCATTTATAAGACTATAAATCATTGAAAGCGAGTAAC-AAGCCTTTCGAAAGC
1 TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAA-CCTTTTGAAGGC
* * * * * * *
263391 ATAAGAGACTGTAAATGGGCTTTTCTTGTCAATAGATGGCTTTTACTTCATG-TTTCTTAAGACA
65 ATGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTT-TTGAGACA
* * * * * *
263455 AACATCTAGTCATGATTTGTTTTAGCTAAAAATGAAATAAAGTTTTAACTTAAAATCATTTATAA
129 AACATCTAATCATGATCTATTTTAACTAAAAATGAAAAAAAGGTTTAACTTAAAATCATTTATAA
* * * ** *
263520 GATTATAAAATCATTT---G-AAGCAATTAGCCTTTCGAAGGCATGAATGATTGTAAATGGCCTT
194 GATTATAAAATCATTTAAAGAAAGTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGACTT
* ** ** * * *
263581 TTCTTATTAA-TGAATGGCTTTCAATTCA-CTTTCCCAAAGGCAAACATCCAATAATGATCTTTT
259 TTCTTATCAATTG-ATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCTGTT
* *
263644 TTAAGCAAAACTGAA--AAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGTACTAAAA
323 TTAA-CAAAA---AATTAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGTATTGAAA
* * ** *
263707 GTGAGTAACTAGTCTTTCGAAGGCATGGGCGACTATATTTTGACTTTTCTTGTCCATGGATGGCT
384 GTGAGTAACTAGTCTTTCGAAGGCATGAGCAACTATA-AATGACTTTTCTTGTCAATGGATGGCT
* *
263772 TTCATCTCATGTTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAACATGAAAAAAAA
448 TTCAT-TC-TATTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATG-AAAAAAA
* * * *
263837 ATTCAACTCAAAATTATTTATAGGATTATAAAATCATTGAAAGCGAGTAACTAGTATTTTGAAGG
510 ATTCAACTTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTGAAGG
* * * * *
263902 CATGAGTGACTGTAAATGTACTTCTCTAGTCAATGGAAGGCTGTCACTTCATACTTCTCGAGACA
575 CATGAGTGACTATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGCTTTTAGAGACA
* *
263967 AACATCAAATTAGGATCTG-TTTAACTAGAAATAAAAAAAA
640 AACATCCAATTATGATCTGTTTTAACTAGAAATAAAAAAAA
* ** * * *
264007 TTTAAGTTAAAATCATTTATAAGTGTACAAATCATTCAAAGTGAGGAACTAACCTTTTAAAGGCA
1 TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGCA
*
264072 TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTTTTGAGGCAAA
66 TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTTTTGAGACAAA
* * * ***
264137 CAACTAATCAAGATCTATTTTAGAC-AAAAATGAAAAAATGGTTTAACTTAAAATTGCTTATAAG
131 CATCTAATCATGATCTATTTTA-ACTAAAAATGAAAAAAAGGTTTAACTTAAAATCATTTATAAG
* *
264201 ATTATAAAA-CTATTTAAAGAAATTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGGCTT
195 ATTATAAAATC-ATTTAAAGAAAGTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGACTT
* *
264265 TTCTTATCAATTGATGGATTTTGATTCACCTTT-TCAGAGGCAAACATCCAATTATGATCTATTT
259 TTCTTATCAATTGATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCTGTTT
** * *
264329 TAACAAAAAATTTTAAAAAA-TCAACTTAAAATCATTTATAAAATTTGAAAGTATTGAAAGTGAG
324 TAACAAAAAATTAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGTATTGAAAGTGAG
* * *
264393 TAACTAGTCTTTCAAAGGCATGAGCAACTATAACATGGCTTTTGTTGTCAATGGATGGCTTTCGA
389 TAACTAGTCTTTCGAAGGCATGAGCAACTATAA-ATGACTTTTCTTGTCAATGGATGGCTTTC-A
* *
264458 TTCTATTTTTTGAGGCAAAAATCAAATTATTATATGTTTTAGTC-AAAATGAAAAAAAATTCAAC
452 TTCTATTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATGAAAAAAAATTCAAC
* * * *
264522 TTAAACTAATTTATAAGATTATAAAACCATTGAACGTGAGTAACTAGTATTTTGAAGGCATGAAT
517 TTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTGAAGGCATGAGT
264587 -AGCTATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGCTTTTAGAGACAAACATC
582 GA-CTATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGCTTTTAGAGACAAACATC
264651 CAATTATGATCTGTTTTAACTAGAAATAAGAAAAAA
646 CAATTATGATCTGTTTTAACTAGAAATAA-AAAAAA
* * * * * *
264687 TTCAACTTAAAATTATTTACAAGACTATAAACCATTCAAAGCGAGTAACTAGCCTTTTGAAGGCA
1 TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGCA
* * * *
264752 TGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTGCTTCATGTTTTTTGAGACAAA
66 TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTTTTGAGACAAA
* * * * *
264817 TATCTAATCATGATCTGTTTTAACTAAAAATGAAAAAAAAAGTTTAACTAAAAATCATTTATAAA
131 CATCTAATCATGATCTATTTTAACTAAAAATG-AAAAAAAGGTTTAACTTAAAATCATTTATAAG
* * * * *
264882 ATTATAAAATCATTTAAA-ATGAGTATTTAG-CTTTTGAAAG-TATGAATGTTTATAAATGGACT
195 ATTATAAAATCATTTAAAGA-AAGTAATTAGTC-TTTCAAAGATATGAATGATTGTAAATGGACT
* * * * * * *
264944 TTTCTTATCAATTGATGCCTTTTGATTAACCTTTCT-AGAGGCAAACATCTAGTCATGATTTGTT
258 TTTCTTATCAATTGATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCTGTT
* * * *
265008 TTAATAAAAAATAAAAAAAAATTCAACTTAAAATCATTTGA-AAGATTTTAAAGCATTGGAAGTG
323 TTAACAAAAAATTAAAAAAAATTCAACTTAAAATCATTT-ATAAGATTTTAAAGTATTGAAAGTG
*
265072 AGTAACTAGTCTTTCGAATGCATGAGCAA-TGATAAATTGACTTTTCTTGTCAATGGATGGCTTT
387 AGTAACTAGTCTTTCGAAGGCATGAGCAACT-ATAAA-TGACTTTTCTTGTCAATGGATGGCTTT
** * *
265136 CACTTC-ATGTCTTTTGAGATAAAAATCAAATTATGATATCTTTCAGCCAAAAATGAAAATAAAA
450 CA-TTCTAT-T-TTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATGAAAA-AAAA
* * * * * *
265200 TTCAACTTAAAATCATTTA-CAGAATTATAAAACTAATGAGAGCGAATAACTAGTATTTTGAAGG
511 TTCAACTTAAAATAATTTATAAG-ATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTGAAGG
* * ** ** *
265264 CATGAGTGACAATAAATGTACTTCTCTAGTCAACGGATGGCTGTTGCTTCACACATCTT-GAGA-
575 CATGAGTGACTATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGC-TTTTAGAGAC
*
265327 AAATCATCCAATAATGATCTGTTTTAACTAGAAATAAAAAAAA
639 AAA-CATCCAATTATGATCTGTTTTAACTAGAAATAAAAAAAA
* * * * * * * ** *
265370 TTCACCTTAAAATCAATTATAAAACCATACATCATTTAAAGTGAGTAACTTGCTTTTTGAAGGCA
1 TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGCA
* * * *
265435 TGAGTGACTATAAATGGACTTTTCTTATTAATGGATGGCTTTTGCTTCAT-ATTTCCT-ATGACA
66 TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTT-TTGA-GACA
* * *
265498 AACATCTACA-CATGATCTATTTTAACCAAAAATAAAAAAAAAGGTTTAACTTATAATCATTTAT
129 AACATCTA-ATCATGATCTATTTTAACTAAAAAT-GAAAAAAAGGTTTAACTTAAAATCATTTAT
* **
265562 AAGATTATAAAATCAGTTAAAGCGAGTAATTAGTCTTTCAAAGGA-ATGAATGATTGTAAATGGA
192 AAGATTATAAAATCATTTAAAGAAAGTAATTAGTCTTTCAAA-GATATGAATGATTGTAAATGGA
* *
265626 CTTTTCTTATCAATTGATTGCTTTTGATTCACCTTTAT-AGAGGCAAACATCTAATTATGATCTG
256 CTTTTCTTATCAATTGATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCTG
* * * * * *
265690 TTTTGACCAAAAATAATAAAAAAAATGCAACTTCAAATCATTTATAAGATTATAAAATCATTGAA
321 TTTT-AACAAAAA-ATTAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGT-ATTGAA
* * * * *** * *
265755 CGTAAGTAACTAGGCTTTCGAAGGCCTGAGTGGCTATAAATGGACTTTTTTTGTCCATGGATGGC
383 AGTGAGTAACTAGTCTTTCGAAGGCATGAGCAACTATAAAT-GACTTTTCTTGTCAATGGATGGC
* *** * * * * * * *
265820 TTTTGC-TTCAAGTTTTCCAAGGGAAACATCCAATTATGATCTTTTTTATCGAAAAATGAAAAAA
447 -TTT-CATTCTA-TTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATGAAAAAA
* * * ** **
265884 AATTCAACATAAAATAATTTATAAGATTATAAAACCATTGAAAGCAAATAACTAGTCCTTCAAAG
509 AATTCAACTTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTGAAG
* * * * * * ** * * *
265949 GCATGAGTGGCTATAAATGAACTTTTCTTGTCAATCGATGGCTTTTGCTTCACG-TTTCTTGAGG
574 GCATGAGTGACTATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGCTTT-TAGAGA
* * *
266013 TAAATATCCAATTATGATATGTTTTAA-T---AA-AAAAAAAA
638 CAAACATCCAATTATGATCTGTTTTAACTAGAAATAAAAAAAA
* * * **
266051 TTTAACTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAATATTTTGAAGGC
1 TTTAACTTAAAATCATTTATAAGACTAT-AAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGC
* * *
266116 ATGAGTGGCTAGATAAATGGACTTTTCTTATCAATGGATGGCTTTCGCTT--TGCTTTTCCTAAG
65 ATGAGTGACT-G-TAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTTT--TGAG
* * * *
266179 TCAAACAT-TCAATTATGAT-T-TGTTTAA-TAAAAAGTG-AAAAAA--TTCAATTTAAAATCAT
126 ACAAACATCT-AATCATGATCTAT-TTTAACTAAAAA-TGAAAAAAAGGTTTAACTTAAAATCAT
* * * *** * * ** * * *
266237 TCACAAGATTATAAAACCATTTAAATTGAGTAACTAGTATTTTC-AAGGCATGAGTGAATATAAA
188 TTATAAGATTATAAAATCATTTAAAGAAAGTAATTAGT-CTTTCAAAGATATGAATGATTGTAAA
* * * * *** * * *** *
266301 TGTA-TTTGT-TTAGTCAATGGATGGC-TGTCACTTCATGGTTCT-TGAAATAAATATCCAATTA
252 TGGACTTT-TCTTA-TCAATTGATGGCTTTTGA-TTCACCTTTATCAGAGGCAAACATCCAATTA
* *** * ***
266362 TGATCAGTTTTAACCTGAAA-TAAAAAAAATTCAACTTAAAATCATTTATATGACAATAAA-TCA
314 TGATCTGTTTTAACAAAAAATTAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGT-A
* * * * ** *
266425 TTCAAAGTGAATAACTAGCCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTATCAATGG
378 TTGAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGCAACTATAAAT-GACTTTTCTTGTCAATGG
** * * * * *
266490 ATGGCTTGTGC-TTC-ATGTTTCCCGAGGCAAACATCTAATCATGATCTATTTTAGCCAAAAAT-
442 ATGGCTT-T-CATTCTAT-TTT-TTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATG
* * * * * * * *
266552 AAAAAAAATGTTTAACTTATAATCATTTATAAGATTATAAAATCATTTAAAACGAGTAAGTAGTC
503 AAAAAAAA--TTCAACTTAAAATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTA
* * * ** * * * * * *
266617 TTTCGAAGGCATGAATGATTGCAAATGGACTTTTCTTA-TCAATTGATGGCTTTTGA-TTCA-CC
566 TTTTGAAGGCATGAGTGACTATAAATGTACTTCTC-TAGTCAATGGATGGC-TGTCACTTCATGC
* ** * * * *
266679 TTTCTAAAGGTAAACATCCAATTATGATATGTTTTGACCAAAAATGAAAAAAAA
629 TTT-TAGAGACAAACATCCAATTATGATCTGTTTTAACTAGAAAT-AAAAAAAA
* * * * **
266733 TTCAATTTAAAATCATTTATAAGATTATTAAATCATTGAAAGCAAGTAACT
1 TTTAACTTAAAATCATTTATAAGACTA-TAAATCATTCAAAGTGAGTAACT
266784 GGGCTTTCAA
Statistics
Matches: 3388, Mismatches: 609, Indels: 295
0.79 0.14 0.07
Matches are distributed among these distances:
673 1 0.00
674 14 0.00
675 101 0.03
676 155 0.05
677 6 0.00
678 153 0.05
679 125 0.04
680 482 0.14
681 508 0.15
682 232 0.07
683 278 0.08
684 463 0.14
685 203 0.06
686 421 0.12
687 235 0.07
688 9 0.00
689 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.34
Consensus pattern (680 bp):
TTTAACTTAAAATCATTTATAAGACTATAAATCATTCAAAGTGAGTAACTAACCTTTTGAAGGCA
TGAGTGACTGTAAATGGACTTTTCTTATCAATGGATGGCTTTTGCTTCATGCTTTTTGAGACAAA
CATCTAATCATGATCTATTTTAACTAAAAATGAAAAAAAGGTTTAACTTAAAATCATTTATAAGA
TTATAAAATCATTTAAAGAAAGTAATTAGTCTTTCAAAGATATGAATGATTGTAAATGGACTTTT
CTTATCAATTGATGGCTTTTGATTCACCTTTATCAGAGGCAAACATCCAATTATGATCTGTTTTA
ACAAAAAATTAAAAAAAATTCAACTTAAAATCATTTATAAGATTTTAAAGTATTGAAAGTGAGTA
ACTAGTCTTTCGAAGGCATGAGCAACTATAAATGACTTTTCTTGTCAATGGATGGCTTTCATTCT
ATTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCCAAAAATGAAAAAAAATTCAACTTAA
AATAATTTATAAGATTATAAAACCATTGAAAGCGAGTAACTAGTATTTTGAAGGCATGAGTGACT
ATAAATGTACTTCTCTAGTCAATGGATGGCTGTCACTTCATGCTTTTAGAGACAAACATCCAATT
ATGATCTGTTTTAACTAGAAATAAAAAAAA
Found at i:265038 original size:342 final size:339
Alignment explanation
Indices: 261023--266783 Score: 3794
Period size: 342 Copynumber: 16.9 Consensus size: 339
261013 CTTTTTTTTG
* * * **
261023 TCAATGGATGGCTTTCT-CTTCATGATTCTAGAGGCAAACATCCAATTATGATCTGTTTTAATGA
1 TCAATGGATGGCTTT-TGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCA
* * *
261087 AAAATGAAAAACAATTCAACTTAAAAAATCATTTATAAGTTTATAAAATCATTGAAAGCGAGTAA
65 AAAATGAAAAAAAATTCAACTT--AAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAA
* * * * * * * *
261152 GTAGTCTTTCGAACGCATGAGTGACTATAAATGGACTTTTTTTGTCAATAGATGGCTTTCT-CTT
128 CTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTT-TGATT
* * * * * *
261216 CACATTTCCCA-AGACAAACGTCCAATTATGATTTGTTTTAATCAAAAA-ATGAAAAAAATTCAA
191 CACCTTT-CTAGAGGCAAACATCCAATTATGATCTGTTTTAAT-AAAAATA-AAAAAAAATTCAA
** ** ** * *
261279 CTTAAAATCATTTATAAGGCTATAAATTATTCGAAGTGAATAAATAG-CTTTTCGAAGGCATGAG
253 CTTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTC-TTTCGAAGGCATGAG
* *
261343 TAACTATAAATGGACTTTT-TTGG
317 TGACTATAAATGGACTTTTCTT-A
* * * * * * * ***
261366 TCAATGGATGGCTTTTGCTTCATATTTCTTAAGACAAACATCCAATTACGATATATTTTATTAAA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCAA
* * * * *
261431 AAATGAAAAAAAATT-AACTTAAAATCATTTATATGATTTTAAAACCATTTAGAA-CGACTAACC
66 AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTA-AAGCGAGTAACT
* * ** * *
261494 AG-TATTGAGAAGGCAT-AAGTGGCTATAAATGGA-TTTTCCTTATCAACGGAT-GATTTTCACT
130 AGCT-TT-TGAAGGCATGAA-TGACTATAAATGGACTTTT-CTTATCAATTGATGGCTTTTGA-T
* * * ** * * * *
261555 TCACGTTTCCCA-TGGCAAATGTCTAATTATGATTTATTTTGAA-AAAAAT--AAAAAATTTCAA
190 TCACCTTT-CTAGAGGCAAACATCCAATTATGATCTGTTTT-AATAAAAATAAAAAAAAATTCAA
* * *
261616 CTTAAAATCATTTATAAGATTTTCAAACTATTTAAAGCGAGTAACTAGTCTTTCG-AGGCATGAG
253 CTTAAAATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAG
** *** *
261680 CAACTAT-AA--GACTATAAATAA
317 TGACTATAAATGGACT-TTTCTTA
** ** * ** ** * * *
261701 AAAATAAAAAATGAACCTTCTTGTCAACA-GATAGCTTTCAGTTC--ACATTTGCAATTATGATC
1 TCAAT---GGATG--GCTT-TTG-CTTCATG-TTTC-TTGAG-GCAAACATCT--AATTATGATC
* * * * *
261763 T-TTTGTAACTAAAGAT-AACAAAAA-TCAACTTAAAATTATTTATAAGACTAT-AAATCATTTA
54 TGTTT-TAACCAAAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTA
* * * * * * * * * *
261824 AAGCAAGCAATTAGCCTTTCAGAGGCATGAATGACTGTAAAT-GAATATTTTTTGTCAATAGATG
118 AAGCGAGTAACTAGCTTTTGA-AGGCATGAATGACTATAAATGGACT-TTTCTTATCAATTGATG
* ** * * * * * * * *
261888 ACTTTT-ACTTCATGTTT-TCGAAGACAAATAGCCAAGTATGATCT-ATTTAGGTAAAAATGATA
181 GCTTTTGA-TTCACCTTTCTAG-AGGCAAACATCCAATTATGATCTGTTTTA-ATAAAAAT-AAA
*** * * ** * * **
261950 AAAGGGTTTAACTTAAAATCATTTATAAGATTATAAGCCATTTAAAGCAACTAACTAGTATTTTA
242 AAAAAATTCAACTTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCG
* * *
262015 AAGGTATGAGTGACAATAAATAGACTTTTCTTA
307 AAGGCATGAGTGACTATAAATGGACTTTTCTTA
* * * * * * * *
262048 CCAATGCATAG-TTTTCGCTTCATGTGTCTAGCGGCAAACATCCAATTATGATATGTTTTAACCA
1 TCAATGGATGGCTTTT-GCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCA
** * *
262112 AAAATGAAAAATAAATTCAACTTAAAATTGTTTACAAGATTAT-AAATCCATTTAAAGTGAGTAA
65 AAAATGAAAAA-AAATTCAACTTAAAATCATTTATAAGATTATAAAAT-CATTTAAAGCGAGTAA
* * * * * *
262176 GTAG-TATTTCGAAGGCATTAGTGACAATAAATGGATTTTTAC-TATCAA-TGAATGGC-TTTCA
128 CTAGCT-TTT-GAAGGCATGAATGACTATAAATGGACTTTT-CTTATCAATTG-ATGGCTTTTGA
* ** * * *
262237 TTTTAGATTTCCCA-AGGCAAACATCCAATGATGATTTGTTTTAACTAAAAATGAAAAAAAAATT
189 -TTCACCTTT-CTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAAT-AAAAAAAAA-T
* * * * * *
262301 TCAACCTAAAATCATTTATTAGATTATAAAACTATTTAAAGTGACTAACTAGTATTTCGAAGGTA
249 TCAACTTAAAATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCA
* *
262366 TGAGT-AGCCATAAATAGACTTTTCTTA
313 TGAGTGA-CTATAAATGGACTTTTCTTA
* * * * * *
262393 TCAATGGATGGCTTTCGCTTCACGTTTCCTGAGGCAAAGATGC-AATTATGATCTATTTTAACAA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACAT-CTAATTATGATCTGTTTTAACCA
* * * * * *
262457 AAAATG-AGAAAAATTCAGCCTAAAATCATTTATAAGATTACAAAA-CTATTTAAAACGAGTAAT
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCGAGTAAC
* * * * *
262520 TAGGCTTTCGAATGCATGAATGACTACAAATGGATTTTTCTTATCAATTGATGGCTTTCG-TGTC
129 TA-GCTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGAT-TC
** * * * * * *
262584 ATGTTTCTAGAGGAAAACATCCAATTATGATATGTTTTAACCAAAAATGAAAAAGAATTCAACTG
192 ACCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAACTT
* * * * * *
262649 AAAAGCATTTATAAGATTATAAAACCATTTAAAGCGAATAAGTAGTATTTCGAAGGCATGAGCGA
256 AAAATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTGA
262714 CTATAAATGGACTTTTCTT-
320 CTATAAATGGACTTTTCTTA
* * * * * * * * **
262733 GCAAATGGATAGCTTTTGCTTAACGTTTCTTAAAGCAAACATCCAATTATGATCTATTTTAATGA
1 TC-AATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCA
* * ** * * *
262798 AAAATGAAAAAAATGTTCAAATTAAAGCCATTTATAGGATTATAAAACCATTTAAAGAGAGTAAC
65 AAAATGAAAAAAA-ATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAAC
* * * * * *
262863 TTATC-TTTCAAGGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCTTTTGCTTC
129 -TAGCTTTTGAA-GGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTC
* * * * * * * * *
262927 ACATTTCTTGAAGCAAACATCCAATGATGATTTGTTTTAACCAAAAATGAAAAACAATT-AATTT
192 ACCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAA-CT
** * * * * * * * * * * *
262991 TAAAAT-AGCCTACATGGTTCTAAAACCTTTTAAAATGAGTAACAAGCCATTCTAAGGGATGAGT
255 TAAAATCA-TTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGT
*
263055 CACTATAAATGGACTTTTCTTA
318 GACTATAAATGGACTTTTCTTA
* * * * * *
263077 TCAATGGATAGCTTTTGCTTCATGTTTCTT-AGAGTAAACATCCAATCATGATCTGTTTCAA-GA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAG-GCAAACATCTAATTATGATCTGTTTTAACCA
* * * * ** * *
263140 AAAACTGAAAAAAAAAATTCTACTTCAAATTATTTCTAAGATTATAAACCCATTGAAAGCAAGTA
65 AAAA-TG--AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTA
** * ** * * *
263205 ACTAGCATTTCAAAGGCATGAGTGACTATAAATATACTTCTC-TAGTCAATGGATGGC--TAGCA
127 ACTAGC-TTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTA-TCAATTGATGGCTTTTG-A
* * * * * * * *
263267 CTTCATGC-TTATAGAGACAAACATTCAGTTATAATCTATTTTAGCTAAAAATAAAAAAAAATT-
189 -TTCA-CCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTA-ATAAAAATAAAAAAAAATTC
* * * * * * * * *
263330 AGCTTAAAATCATTTATAAGACTATAAATCATTGAAAGCGAGTAACAAGCCTTTCGAAAGCATAA
251 AACTTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGA
* * * *
263395 GAGACTGTAAATGGGCTTTTCTTG
316 GTGACTATAAATGGACTTTTCTTA
* * * * * * * * *
263419 TCAATAGATGGCTTTTACTTCATGTTTCTTAAGACAAACATCTAGTCATGATTTGTTTTAGCTAA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCAA
** * * *
263484 AAATGAAATAAAGTTTTAACTTAAAATCATTTATAAGATTATAAAATCATTTGAAGC----AATT
66 AAATGAAA-AAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAACT
* * * * * **
263545 AGCCTTTCGAAGGCATGAATGATTGTAAATGGCCTTTTCTTATTAA-TGAATGGCTTTCAATTCA
130 AG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTG-ATGGCTTTTGATTCA
* * * * * *
263609 -CTTTCCCAAAGGCAAACATCCAATAATGATCTTTTTTAAGCAAAACTGAAAAAAAAAATTCAAC
193 CCTTT-CTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAAT--AAAAAAAAATTCAAC
* ** * * * *
263673 TTAAAATCATTTATAAGATTTTAAAGTACTAAAAGTGAGTAACTAGTCTTTCGAAGGCATGGGCG
254 TTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTG
** * *
263738 ACTATATTTTGACTTTTCTTG
319 ACTATAAATGGACTTTTCTTA
* * * * * *
263759 TCCATGGATGGC-TTT-CATCTCATGTTTTTTGAGGCAAAAATCAAATTATGATATGTTTTAGCC
1 TCAATGGATGGCTTTTGC-T-TCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACC
* * * * *
263822 AAACATGAAAAAAAAATTCAACTCAAAATTATTTATAGGATTATAAAATCATTGAAAGCGAGTAA
64 AAAAATG-AAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAA
* * * * * * * * *
263887 CTAGTATTTTGAAGGCATGAGTGACTGTAAATGTACTTCTC-TAGTCAATGGAAGGC-TGTCACT
128 CTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTA-TCAATTGATGGCTTTTGA-T
* * * * * * *
263950 TCATAC-TTCTCGAGACAAACATCAAATTAGGATCTG-TTTAACTAGAAAT-AAAAAAAATTTAA
190 TCA-CCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAA
* * * * * ** **
264012 GTTAAAATCATTTATAAG-TGTACAAATCATTCAAAGTGAGGAACTAACCTTTTAAAGGCATGAG
253 CTTAAAATCATTTATAAGAT-TATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAG
*
264076 TGACTGTAAATGGACTTTTCTTA
317 TGACTATAAATGGACTTTTCTTA
* * * *
264099 TCAATGGATGGCTTTTGCTTCATGCTTT-TTGAGGCAAACAACTAATCAAGATCTATTTTAGA-C
1 TCAATGGATGGCTTTTGCTTCATG-TTTCTTGAGGCAAACATCTAATTATGATCTGTTTTA-ACC
** * *** ** *
264162 AAAAATGAAAAAATGGTTTAACTTAAAATTGCTTATAAGATTATAAAA-CTATTTAAAGAAATTA
64 AAAAATGAAAAAA-AATTCAACTTAAAATCATTTATAAGATTATAAAATC-ATTTAAAGCGAGTA
* ** ** * * * *
264226 ATTAGTCTTTCAAAGATATGAATGATTGTAAATGGGCTTTTCTTATCAATTGATGGATTTTGATT
127 ACTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATT
* * ***
264291 CACCTTT-TCAGAGGCAAACATCCAATTATGATCTATTTTAACAAAAAATTTTAAAAAA-TCAAC
191 CACCTTTCT-AGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAAC
* ** * * *
264354 TTAAAATCATTTATAAAATT-TGAAAGTATTGAAAGTGAGTAACTAGTCTTTCAAAGGCATGAGC
254 TTAAAATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGT
* * *
264418 AACTATAACATGG-CTTTTGTTG
318 GACTATAA-ATGGACTTTTCTTA
* * * * * * **
264440 TCAATGGATGGCTTTCGATTCTAT-TTT-TTGAGGCAAAAATCAAATTATTATATGTTTTAGTC-
1 TCAATGGATGGCTTTTGCTTC-ATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCA
* * * * * *
264502 AAAATGAAAAAAAATTCAACTTAAACTAATTTATAAGATTATAAAACCATTGAACGTGAGTAACT
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAACT
* * * * * *
264567 AGTATTTTGAAGGCATGAAT-AGCTATAAATGTACTTCTC-TAGTCAATGGATGGC-TGTCACTT
130 AG-CTTTTGAAGGCATGAATGA-CTATAAATGGACTTTTCTTA-TCAATTGATGGCTTTTGA-TT
* * * *
264629 CATGCTTT-TAGAGACAAACATCCAATTATGATCTGTTTTAACTAGAAATAAGAAAAAATTCAAC
191 CA-CCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCAAC
* * * * * * *
264693 TTAAAATTATTTACAAGACTATAAACCATTCAAAGCGAGTAACTAGCCTTTTGAAGGCATGAGTG
254 TTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTG
* *
264758 ACTATAAATAGACTTTTCTTG
319 ACTATAAATGGACTTTTCTTA
* * * * *
264779 TCAATGGATGGCTTTTGCTTCATGTTTTTTGAGACAAATATCTAATCATGATCTGTTTTAACTAA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCAA
* * * ** **
264844 AAATGAAAAAAAAAGTTTAACTAAAAATCATTTATAAAATTATAAAATCATTTAAAATGAGTATT
66 AAATG-AAAAAAAA-TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAAC
* * ** * *
264909 TAGCTTTTGAAAGTATGAATGTTTATAAATGGACTTTTCTTATCAATTGATGCCTTTTGATTAAC
129 TAGCTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTCAC
* * * *
264974 CTTTCTAGAGGCAAACATCTAGTCATGATTTGTTTTAATAAAAAATAAAAAAAAATTCAACTTAA
194 CTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAAT-AAAAATAAAAAAAAATTCAACTTAA
* * ** * * *
265039 AATCATTTGA-AAGATTTTAAAGCATTGGAAGTGAGTAACTAGTCTTTCGAATGCATGAG-CAAT
258 AATCATTT-ATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTGACT
* *
265102 GATAAATTGACTTTTCTTG
322 -ATAAATGGACTTTTCTTA
** ** * * * * * *
265121 TCAATGGATGGCTTTCACTTCATGTCTT-TTGAGATAAAAATCAAATTATGATATCTTTCAGCCA
1 TCAATGGATGGCTTTTGCTTCATGT-TTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCA
* * * * *
265185 AAAATGAAAATAAAATTCAACTTAAAATCATTTA-CAGAATTATAAAA-CTAATGAGAGCGAATA
65 AAAATGAAAA-AAAATTCAACTTAAAATCATTTATAAG-ATTATAAAATC-ATTTAAAGCGAGTA
* * * * * ** * *
265248 ACTAGTATTTTGAAGGCATGAGTGACAATAAATGTACTTCTC-TAGTCAACGGATGGCTGTTGCT
127 ACTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTA-TCAATTGATGGCTTTTGAT
* * * * *
265312 TCACAC-ATCTTGA-GAAAATCATCCAATAATGATCTGTTTTAACTAGAAAT-AAAAAAAATTCA
190 TCAC-CTTTCTAGAGGCAAA-CATCCAATTATGATCTGTTTTAA-TAAAAATAAAAAAAAATTCA
* * * ** * * * *
265374 CCTTAAAATCAATTATAAAACCATACATCATTTAAAGTGAGTAACTTG-CTTTTTGAAGGCATGA
252 ACTTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTC-TTTCGAAGGCATGA
265438 GTGACTATAAATGGACTTTTCTTA
316 GTGACTATAAATGGACTTTTCTTA
* * * *
265462 TTAATGGATGGCTTTTGCTTCATATTTCCTATGA--CAAACATCTACA-CATGATCTATTTTAAC
1 TCAATGGATGGCTTTTGCTTCATGTTT-CT-TGAGGCAAACATCTA-ATTATGATCTGTTTTAAC
* * * *
265524 CAAAAATAAAAAAAAAGGTTTAACTTATAATCATTTATAAGATTATAAAATCAGTTAAAGCGAGT
63 CAAAAATGAAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGT
* ** * * * *
265589 AATTAGTCTTTCAAAGGAATGAATGATTGTAAATGGACTTTTCTTATCAATTGATTGCTTTTGAT
126 AACTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGAT
* * ** *
265654 TCACCTTTATAGAGGCAAACATCTAATTATGATCTGTTTTGACCAAAAATAATAAAAAAAATGCA
190 TCACCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTT-AATAAAAAT-A-AAAAAAAATTCA
* * * * * * *
265719 ACTTCAAATCATTTATAAGATTATAAAATCATTGAACGTAAGTAACTAGGCTTTCGAAGGCCTGA
252 ACTTAAAATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGA
* * *
265784 GTGGCTATAAATGGACTTTTTTTG
316 GTGACTATAAATGGACTTTTCTTA
* * ** * * * * *
265808 TCCATGGATGGCTTTTGCTTCAAGTTT-TCCAAGGGAAACATCCAATTATGATCTTTTTTATCGA
1 TCAATGGATGGCTTTTGCTTCATGTTTCT-TGAGGCAAACATCTAATTATGATCTGTTTTAACCA
* * * * * *
265872 AAAATGAAAAAAAATTCAACATAAAATAATTTATAAGATTATAAAACCATTGAAAGCAAATAACT
65 AAAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAACT
* ** * * * * * *
265937 AGTCCTTCAAAGGCATGAGTGGCTATAAATGAACTTTTCTTGTCAATCGATGGCTTTTGCTTCAC
130 AG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTCAC
* * * * * *
266002 GTTTCTTGAGGTAAATATCCAATTATGATATGTTTTAAT----A-AAAAAAAAATTTAACTTAAA
194 CTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAATAAAAATAAAAAAAAATTCAACTTAAA
* * * *
266062 ATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACTAATATTTTGAAGGCATGAGTGGCTA
259 ATCATTTATAAGATTAT-AAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTGACT-
266127 GATAAATGGACTTTTCTTA
322 -ATAAATGGACTTTTCTTA
* * * * *
266146 TCAATGGATGGCTTTCGCTT--TGCTTTTCCTAAGTCAAACAT-TCAATTATGATTTG-TTTAA-
1 TCAATGGATGGCTTTTGCTTCATG--TTTCTTGAGGCAAACATCT-AATTATGATCTGTTTTAAC
* * * * * **
266206 TAAAAAGTG--AAAAAATTCAATTTAAAATCATTCACAAGATTATAAAACCATTTAAATTGAGTA
63 CAAAAA-TGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTA
* * * * * * * *
266269 ACTAGTATTTTCAAGGCATGAGTGAATATAAATGTA-TTTGT-TTAGTCAATGGATGGC-TGTCA
127 ACTAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTT-TCTTA-TCAATTGATGGCTTTTGA
*** * *** * * *
266331 CTTCATGGTTCTTGAAATAAATATCCAATTATGATCAGTTTTAACCT-GAAAT-AAAAAAAATTC
189 -TTCACCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTTAA--TAAAAATAAAAAAAAATTC
* ** * * * * *
266394 AACTTAAAATCATTTATATGACAATAAATCATTCAAAGTGAATAACTAGCCTTTTGAAGGCATGA
251 AACTTAAAATCATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGA
*
266459 GTGACTATAAATAGACTTTTCTTA
316 GTGACTATAAATGGACTTTTCTTA
* ** * * *
266483 TCAATGGATGGCTTGTGCTTCATGTTTCCCGAGGCAAACATCTAATCATGATCTATTTTAGCCAA
1 TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCAA
* * * *
266548 AAAT-AAAAAAAATGTTTAACTTATAATCATTTATAAGATTATAAAATCATTTAAAACGAGTAAG
66 AAATGAAAAAAAA--TTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAAC
* * **
266612 TAGTCTTTCGAAGGCATGAATGATTGCAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTCA
129 TAG-CTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTCA
* * * ** * *
266677 CCTTTCTAAAGGTAAACATCCAATTATGATATGTTTTGACCAAAAATGAAAAAAAATTCAATTTA
193 CCTTTCTAGAGGCAAACATCCAATTATGATCTGTTTT-AATAAAAATAAAAAAAAATTCAACTTA
* * **
266742 AAATCATTTATAAGATTATTAAATCATTGAAAGCAAGTAACT
257 AAATCATTTATAAGATTA-TAAACCATTTAAAGTGAGTAACT
266784 GGGCTTTCAA
Statistics
Matches: 4214, Mismatches: 973, Indels: 462
0.75 0.17 0.08
Matches are distributed among these distances:
334 11 0.00
335 127 0.03
336 83 0.02
337 191 0.05
338 241 0.06
339 215 0.05
340 610 0.14
341 636 0.15
342 763 0.18
343 617 0.15
344 399 0.09
345 193 0.05
346 117 0.03
347 7 0.00
348 4 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (339 bp):
TCAATGGATGGCTTTTGCTTCATGTTTCTTGAGGCAAACATCTAATTATGATCTGTTTTAACCAA
AAATGAAAAAAAATTCAACTTAAAATCATTTATAAGATTATAAAATCATTTAAAGCGAGTAACTA
GCTTTTGAAGGCATGAATGACTATAAATGGACTTTTCTTATCAATTGATGGCTTTTGATTCACCT
TTCTAGAGGCAAACATCCAATTATGATCTGTTTTAATAAAAATAAAAAAAAATTCAACTTAAAAT
CATTTATAAGATTATAAACCATTTAAAGTGAGTAACTAGTCTTTCGAAGGCATGAGTGACTATAA
ATGGACTTTTCTTA
Found at i:275013 original size:24 final size:24
Alignment explanation
Indices: 274985--275030 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
274975 TCCTTATTGG
**
274985 GTTTTCTCTCACTTGTTCTCTCGT
1 GTTTTCTCTCACGAGTTCTCTCGT
275009 GTTTTCTCTCACGAGTTCTCTC
1 GTTTTCTCTCACGAGTTCTCTC
275031 ATTTTTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.07, C:0.30, G:0.13, T:0.50
Consensus pattern (24 bp):
GTTTTCTCTCACGAGTTCTCTCGT
Found at i:275037 original size:24 final size:24
Alignment explanation
Indices: 274985--275041 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
274975 TCCTTATTGG
** *
274985 GTTTTCTCTCACTTGTTCTCTCGT
1 GTTTTCTCTCACGAGTTCTCTCAT
275009 GTTTTCTCTCACGAGTTCTCTCAT
1 GTTTTCTCTCACGAGTTCTCTCAT
*
275033 -TTTTTTCTC
1 GTTTTCTCTC
275042 CAAGCAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.07, C:0.28, G:0.11, T:0.54
Consensus pattern (24 bp):
GTTTTCTCTCACGAGTTCTCTCAT
Found at i:275425 original size:56 final size:57
Alignment explanation
Indices: 275348--275466 Score: 161
Period size: 58 Copynumber: 2.1 Consensus size: 57
275338 TAAGGTCTCA
* * * *
275348 ACTTTGCATGCATAGTATTTATT-AATTACAT-AAATAAATCTATCTCATGGATACT
1 ACTTTGCATACATAGCATTTATTAAATTACATAAAATAAATCTATCACATGCATACT
* *
275403 ACTTTGCATCACATAGCATTTATTAAATTGCATAAAATAAATCTATCACATGCATTCT
1 ACTTTGCAT-ACATAGCATTTATTAAATTACATAAAATAAATCTATCACATGCATACT
275461 ACTTTG
1 ACTTTG
275467 GATGATTATG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 9 0.16
56 12 0.22
57 7 0.13
58 27 0.49
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (57 bp):
ACTTTGCATACATAGCATTTATTAAATTACATAAAATAAATCTATCACATGCATACT
Found at i:298048 original size:76 final size:77
Alignment explanation
Indices: 297942--298105 Score: 258
Period size: 76 Copynumber: 2.1 Consensus size: 77
297932 TCAATTTTTC
* * *
297942 AAATTAAAATACTATCCTTAATTTTAGGAATTTCTTTTAAAGTAGAAAACAATTTCCTA-TTTTT
1 AAATTAAAATACTATCCTAAATTTTAGGAATTGCTTTTAAAGTAGAAAACAATCTCCTATTTTTT
298006 ATGAATCACCCA
66 ATGAATCACCCA
* * *
298018 AAATTAAAATTCTATCCTAAATTTTAGGAATTGCTTTTAAAGTAGGAAAGAATCTCCTATTTTTT
1 AAATTAAAATACTATCCTAAATTTTAGGAATTGCTTTTAAAGTAGAAAACAATCTCCTATTTTTT
*
298083 ATGGATCACCCA
66 ATGAATCACCCA
298095 AAATTAAAATA
1 AAATTAAAATA
298106 GATGGTATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
76 53 0.67
77 26 0.33
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (77 bp):
AAATTAAAATACTATCCTAAATTTTAGGAATTGCTTTTAAAGTAGAAAACAATCTCCTATTTTTT
ATGAATCACCCA
Found at i:306042 original size:16 final size:16
Alignment explanation
Indices: 306021--306060 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
306011 AGCAATCTTT
*
306021 CTTGCATTTCATTTTA
1 CTTGCATCTCATTTTA
*
306037 CTTGCATCTCGTTTTA
1 CTTGCATCTCATTTTA
306053 CTTGCATC
1 CTTGCATC
306061 CTACTTGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.10, T:0.50
Consensus pattern (16 bp):
CTTGCATCTCATTTTA
Found at i:307575 original size:49 final size:49
Alignment explanation
Indices: 307502--307698 Score: 220
Period size: 49 Copynumber: 4.0 Consensus size: 49
307492 TTAATGAACG
* * *
307502 ATGAGATGATGTCAGATATATATGTTCTGTTCGTGGATGATTCTGGACA
1 ATGATATGATGTAAGATATGTATGTTCTGTTCGTGGATGATTCTGGACA
* * * * **
307551 ATGATATGATGTGAGATATGTATGTTCT-ATCTGTGCATGATTTTGGATG
1 ATGATATGATGTAAGATATGTATGTTCTGTTC-GTGGATGATTCTGGACA
* * *
307600 ATGATGTGATGAAAGATATGTATGTTCTGTTCGTGGATGATTCCGGACA
1 ATGATATGATGTAAGATATGTATGTTCTGTTCGTGGATGATTCTGGACA
* *
307649 ATGATATGATGTAAGATATGCATGTTTTG-TCG-GACGATGATTCTGGACA
1 ATGATATGATGTAAGATATGTATGTTCTGTTCGTG--GATGATTCTGGACA
307698 A
1 A
307699 GGTATATTAT
Statistics
Matches: 122, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
47 1 0.01
48 5 0.04
49 114 0.93
50 2 0.02
ACGTcount: A:0.27, C:0.09, G:0.27, T:0.37
Consensus pattern (49 bp):
ATGATATGATGTAAGATATGTATGTTCTGTTCGTGGATGATTCTGGACA
Found at i:326655 original size:21 final size:22
Alignment explanation
Indices: 326626--326667 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
326616 TTTTGAAAAT
*
326626 GGCATAATGTATCTATACATCG
1 GGCATAATGTATCGATACATCG
326648 GGCA-AATGTATCGATACATC
1 GGCATAATGTATCGATACATC
326668 TGGTTCTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (22 bp):
GGCATAATGTATCGATACATCG
Found at i:328693 original size:15 final size:15
Alignment explanation
Indices: 328673--328702 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
328663 TACATTACCT
328673 ACATCTATCAATAGA
1 ACATCTATCAATAGA
*
328688 ACATCTATCGATAGA
1 ACATCTATCAATAGA
328703 TCATGCCTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (15 bp):
ACATCTATCAATAGA
Found at i:331660 original size:28 final size:28
Alignment explanation
Indices: 331620--331918 Score: 309
Period size: 28 Copynumber: 10.5 Consensus size: 28
331610 AGCTTGTACT
* *
331620 TGTTTGCCTTAATTTAGATAAAAAAACA
1 TGTTTGTCTTAATTTAGACAAAAAAACA
331648 TGTTTGTCTTAATTTAGA-AAAGAAAACA
1 TGTTTGTCTTAATTTAGACAAA-AAAACA
*
331676 TGTTTGTCTTAGTTTAGAC-AAAAAACA
1 TGTTTGTCTTAATTTAGACAAAAAAACA
*
331703 TGTTTTGTCTTAATTTAGACAAGAAAACA
1 TG-TTTGTCTTAATTTAGACAAAAAAACA
*
331732 TGCTTT-TCTTAATTTAGACAAGAAAACA
1 TG-TTTGTCTTAATTTAGACAAAAAAACA
* * *
331760 TGTTTGTCATAATTTAGACAAAAGAGCA
1 TGTTTGTCTTAATTTAGACAAAAAAACA
* * *
331788 TGCTTTGCCTTAATTTCGAGAAAAAAACA
1 TG-TTTGTCTTAATTTAGACAAAAAAACA
* * *
331817 TGTTTGTTTTAATTTAGATAAGAAAAATA
1 TGTTTGTCTTAATTTAGACAA-AAAAACA
* *
331846 TGTTTTGTCTTAATTTAAACAAGAAAACA
1 TG-TTTGTCTTAATTTAGACAAAAAAACA
** * *
331875 TGTTTGT-TTCAATATTAGACATGATAATA
1 TGTTTGTCTT-AAT-TTAGACAAAAAAACA
331904 TGTTTTGTCTTAATT
1 TG-TTTGTCTTAATT
331919 CAAGATAAGA
Statistics
Matches: 230, Mismatches: 29, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
27 16 0.07
28 125 0.54
29 63 0.27
30 24 0.10
31 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (28 bp):
TGTTTGTCTTAATTTAGACAAAAAAACA
Found at i:340270 original size:36 final size:36
Alignment explanation
Indices: 340181--340271 Score: 121
Period size: 36 Copynumber: 2.5 Consensus size: 36
340171 CCTTTACTTG
* * * *
340181 GCAATGGGGTGTGA-TTAAACTCCATTGTTTGCCATG
1 GCAATGGGGTGTGACAT-GACTCCATCGTTTGCCATA
*
340217 GCAATGGGGTGTGACATGACTCCATCGTTTGCTATA
1 GCAATGGGGTGTGACATGACTCCATCGTTTGCCATA
340253 GCAATGGGGTGTGACATGA
1 GCAATGGGGTGTGACATGA
340272 TATTCTATGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
36 48 0.98
37 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (36 bp):
GCAATGGGGTGTGACATGACTCCATCGTTTGCCATA
Found at i:350055 original size:60 final size:59
Alignment explanation
Indices: 349962--350146 Score: 167
Period size: 60 Copynumber: 3.1 Consensus size: 59
349952 ACATCGTCAC
* * * * * *
349962 CTACTCGTCGGAACTCTCCGCACCACCAAATATAAAACGTGGCTTCAAGTCCCACTTTA
1 CTACTCATGGGAACTCCCCACACCATCAAATATAAAACGAGGCTTCAAGTCCCACTTTA
* *
350021 TCTACTCATGGGAACTCCCCACACCATCAAATATATATAA--AGGCTTCAGGTCCCTCTTTA
1 -CTACTCATGGGAACTCCCCACACCATCAAATATA-A-AACGAGGCTTCAAGTCCCACTTTA
* * ** * * * *
350081 CTTACTCATGGGAACTTCCTATGCCATGAAGTATAAATCGAGGCTTCAAGTCCCCCTTTA
1 C-TACTCATGGGAACTCCCCACACCATCAAATATAAAACGAGGCTTCAAGTCCCACTTTA
350141 CCTACT
1 -CTACT
350147 TGTGTGACTC
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
58 1 0.01
59 2 0.02
60 95 0.93
61 2 0.02
62 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (59 bp):
CTACTCATGGGAACTCCCCACACCATCAAATATAAAACGAGGCTTCAAGTCCCACTTTA
Found at i:353637 original size:14 final size:15
Alignment explanation
Indices: 353614--353651 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
353604 TGGCATAAGA
353614 TATGAAATG-TATAC
1 TATGAAATGTTATAC
* *
353628 TATGATATGTTATAT
1 TATGAAATGTTATAC
353643 TATGAAATG
1 TATGAAATG
353652 ATGATCAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.39, C:0.03, G:0.16, T:0.42
Consensus pattern (15 bp):
TATGAAATGTTATAC
Found at i:364675 original size:35 final size:36
Alignment explanation
Indices: 364509--364730 Score: 285
Period size: 36 Copynumber: 6.3 Consensus size: 36
364499 TCTCAAGCAC
* *
364509 TTGATTAAAATTGTTTAATTAAGTT-GT-G-CCTAA
1 TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
* *
364542 TTCATTAAATTTGTTTAATTAAGTTATTGGAACTAA
1 TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
* *
364578 TTGATTAAATTTGTTTAATCAAGTTATTGGGCCTAA
1 TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
* * *
364614 TTGATTAAATTTGTTTAATCATGTTATTGGACTTAA
1 TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
* *
364650 TTGATGAGA-TTGTTTAATTAAGTTATTGGACCTAA
1 TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
*
364685 TTAATTAAA-TTGTTTAATTAAGTTATTAGG-CCTAA
1 TTGATTAAATTTGTTTAATTAAGTTATT-GGACCTAA
364720 TTGATTAAATT
1 TTGATTAAATT
364731 AAACAATTAA
Statistics
Matches: 164, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
33 23 0.14
34 1 0.01
35 61 0.37
36 79 0.48
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (36 bp):
TTGATTAAATTTGTTTAATTAAGTTATTGGACCTAA
Found at i:364739 original size:35 final size:35
Alignment explanation
Indices: 364665--364744 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 35
364655 GAGATTGTTT
****
364665 AATTAAGTTATTGGACCTAATTAATTAAATTGTTT
1 AATTAAGTTATTGGACCTAATTAATTAAATTAAAC
*
364700 AATTAAGTTATTAGG-CCTAATTGATTAAATTAAAC
1 AATTAAGTTATT-GGACCTAATTAATTAAATTAAAC
364735 AATTAAGTTA
1 AATTAAGTTA
364745 ATTGAGCTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 37 0.95
36 2 0.05
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.41
Consensus pattern (35 bp):
AATTAAGTTATTGGACCTAATTAATTAAATTAAAC
Found at i:366243 original size:179 final size:180
Alignment explanation
Indices: 365918--366244 Score: 505
Period size: 179 Copynumber: 1.8 Consensus size: 180
365908 NNNNNNNNNN
* *
365918 TCCAGCTCACTGTTATGACATGAATTTCAGTTTTAATTAACAAGAAAGTCTGGGAAATTAATTCT
1 TCCAGCTCACTGTTATGACATGAATTTCAGATTTAATTAACAAGAAAGTCTGCGAAATTAATTCT
*
365983 GAAAAATTCCAGAAAAATTATCTTTATTAAAATGTTCAATAAGGATTATTTCTGGAAATTATCAT
66 GAAAAATTCCAGAAAAAATATCTTTATTAAAATGTTCAATAAGGATTATTTCTGGAAATTATCAT
* * * *
366048 TGTCAAATATGCTGATTTCAAGCAATAAAATTGGTGCAAATATAAATCTG
131 GGCCAAACAAGCTGATTTCAAGCAATAAAATTGGTGCAAATATAAATCTG
* * * *
366098 TCCAGCTCACTGTTTTGGCATGAATTTCAGATTTAATTAACAAGAAAGTCTTCGACATTAATT-T
1 TCCAGCTCACTGTTATGACATGAATTTCAGATTTAATTAACAAGAAAGTCTGCGAAATTAATTCT
* * *
366162 CG-AAAATTCCAGAAAAAATATCTTTATTAAAATGTTTAATGAGGATTATTTCTGGAAATTTTCA
66 -GAAAAATTCCAGAAAAAATATCTTTATTAAAATGTTCAATAAGGATTATTTCTGGAAATTATCA
366226 TGGCCAAACAAGCTGATTT
130 TGGCCAAACAAGCTGATTT
366245 ATGCTATTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
179 74 0.56
180 58 0.44
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35
Consensus pattern (180 bp):
TCCAGCTCACTGTTATGACATGAATTTCAGATTTAATTAACAAGAAAGTCTGCGAAATTAATTCT
GAAAAATTCCAGAAAAAATATCTTTATTAAAATGTTCAATAAGGATTATTTCTGGAAATTATCAT
GGCCAAACAAGCTGATTTCAAGCAATAAAATTGGTGCAAATATAAATCTG
Found at i:371182 original size:36 final size:36
Alignment explanation
Indices: 371105--371347 Score: 194
Period size: 36 Copynumber: 6.9 Consensus size: 36
371095 NNTCAAGCAC
* * *
371105 TTGATTAAAATTGTTTAATTAAG---TTGTGCCTAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
* *
371138 TTCATTAAATTTATTTAATTAAGTTATTGGGCATAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
* *
371174 TTGATTAAATTTTTTTAATCAAGTTATTGGGCCTAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
********** *
371210 TTGATTAANNNNNNNNNNTCAAGTTATTGGG-CTCAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCT-AA
* *
371246 TTGATCAAA-TTGTTTAATTAAGTTATTGGGCCTAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
* *
371281 TTAATTAAATTT-TTTAATTAAGTTATTGAGCCTAA
1 TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
* **
371316 TTGATCAAA-TTAAATAATTAAGTTAATTGGGC
1 TTGATTAAATTTATTTAATTAAGTT-ATTGGGC
371348 TTCTTAATGA
Statistics
Matches: 164, Mismatches: 38, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
33 20 0.12
34 2 0.01
35 62 0.38
36 80 0.49
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.42
Consensus pattern (36 bp):
TTGATTAAATTTATTTAATTAAGTTATTGGGCCTAA
Found at i:371276 original size:35 final size:35
Alignment explanation
Indices: 371230--371347 Score: 148
Period size: 35 Copynumber: 3.3 Consensus size: 35
371220 NNNNNNNNTC
*
371230 AAGTTATTGGG-CTCAATTGATCAAATTGTTTAATT
1 AAGTTATTGGGCCT-AATTGATCAAATTATTTAATT
* * *
371265 AAGTTATTGGGCCTAATTAATTAAATTTTTTAATT
1 AAGTTATTGGGCCTAATTGATCAAATTATTTAATT
* **
371300 AAGTTATTGAGCCTAATTGATCAAATTAAATAATT
1 AAGTTATTGGGCCTAATTGATCAAATTATTTAATT
371335 AAGTTAATTGGGC
1 AAGTT-ATTGGGC
371348 TTCTTAATGA
Statistics
Matches: 71, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
35 63 0.89
36 8 0.11
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.42
Consensus pattern (35 bp):
AAGTTATTGGGCCTAATTGATCAAATTATTTAATT
Found at i:371347 original size:106 final size:107
Alignment explanation
Indices: 371151--371348 Score: 229
Period size: 106 Copynumber: 1.9 Consensus size: 107
371141 ATTAAATTTA
* * *
371151 TTTAATTAAGTTATTGGGCATAATTGATTAAATTTTTTTAATCAAGTTATTGGGCCTAATTGATT
1 TTTAATTAAGTTATTGGGCATAATTAATTAAATTTTTTTAATCAAGTTATTGAGCCTAATTGATC
**********
371216 AANNNNNNNNNNTCAAGTTATTGGGCTCAATTGATCAAATTG
66 AAAATTAAATAATCAAGTTATTGGGCTCAATTGATCAAATTG
* *
371258 TTTAATTAAGTTATTGGGCCTAATTAATTAAA-TTTTTTAATTAAGTTATTGAGCCTAATTGATC
1 TTTAATTAAGTTATTGGGCATAATTAATTAAATTTTTTTAATCAAGTTATTGAGCCTAATTGATC
*
371322 -AAATTAAATAATTAAGTTAATTGGGCT
66 AAAATTAAATAATCAAGTT-ATTGGGCT
371349 TCTTAATGAC
Statistics
Matches: 74, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
105 7 0.09
106 37 0.50
107 30 0.41
ACGTcount: A:0.32, C:0.07, G:0.14, T:0.41
Consensus pattern (107 bp):
TTTAATTAAGTTATTGGGCATAATTAATTAAATTTTTTTAATCAAGTTATTGAGCCTAATTGATC
AAAATTAAATAATCAAGTTATTGGGCTCAATTGATCAAATTG
Found at i:372085 original size:3 final size:3
Alignment explanation
Indices: 372077--372107 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
372067 AACTTCAAAC
372077 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
372108 TAGTTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:377732 original size:20 final size:21
Alignment explanation
Indices: 377693--377732 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
377683 ACCAATTCAT
*
377693 CTAAAAGCCATGATGCATATC
1 CTAAAAGCCATCATGCATATC
*
377714 CTAAAA-CCATCATGTATAT
1 CTAAAAGCCATCATGCATAT
377733 TCACAATTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (21 bp):
CTAAAAGCCATCATGCATATC
Found at i:382478 original size:77 final size:77
Alignment explanation
Indices: 382389--382552 Score: 265
Period size: 77 Copynumber: 2.1 Consensus size: 77
382379 AATGCCATTT
* **
382389 ATTTTCATTTTGGGTGATTCATAAAGAATAGGAAATTGATTCCTACTTTAAAAGCAATTCCCAAA
1 ATTTTCATTTTGGATGATTCATAAAGAATAGGAAATTGATTCCTACTTTAAAAAAAATTCCCAAA
382454 ATTAAGGATAGA
66 ATTAAGGATAGA
* * *
382466 ATTTTTATTTTGGATGATTCATAAAGAATAGGAAATTGTTTCCTACTTTAAAAAAAATTCCTAAA
1 ATTTTCATTTTGGATGATTCATAAAGAATAGGAAATTGATTCCTACTTTAAAAAAAATTCCCAAA
*
382531 ATTAAGGATAGC
66 ATTAAGGATAGA
382543 ATTTTCATTT
1 ATTTTCATTT
382553 GGGAAATTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 79 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (77 bp):
ATTTTCATTTTGGATGATTCATAAAGAATAGGAAATTGATTCCTACTTTAAAAAAAATTCCCAAA
ATTAAGGATAGA
Found at i:392286 original size:59 final size:59
Alignment explanation
Indices: 392189--392302 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 59
392179 AATCACAACT
* *
392189 TAAAAAATAAGATTCTATTAAAGTAAGATAAGCATACCTTTTATTTTAAGATTCTAGCC
1 TAAAAAATAAGATTCTATTAAAGTAAGATAAACATACCTTTTATTTCAAGATTCTAGCC
* * **
392248 TAAAACATAAGACTT-TTTTAAAGTAAGATAAATGTACCTTTTATTTCAAGATTCT
1 TAAAAAATAAGA-TTCTATTAAAGTAAGATAAACATACCTTTTATTTCAAGATTCT
392303 TTCTTTCAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
59 46 0.96
60 2 0.04
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (59 bp):
TAAAAAATAAGATTCTATTAAAGTAAGATAAACATACCTTTTATTTCAAGATTCTAGCC
Found at i:393034 original size:29 final size:29
Alignment explanation
Indices: 392987--393242 Score: 315
Period size: 28 Copynumber: 9.0 Consensus size: 29
392977 TTTAAACAAC
* *
392987 TCTTGTCTTTAATTAAGACAAAACATGTTG
1 TCTTGTC-TAAATTAAGACAAAACATGTTT
*
393017 TCTTGTCTAAATTGAGAC-AAACATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
* *
393045 TCTTGTCTAAATTAAGGC-AAACATGGTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
*
393073 TCTTGTCTAAATTGAGACAAAACATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
* * *
393102 TCTTGTCAAAATTAAGGCAAAAAATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
* * * *
393131 TCTTGTCTCAATTAAAAGAAAAAATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
* *
393160 TCTTGTCTAAATTAAAAC-GAACATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
*
393188 TCTTGTCCAAATTAAGA-AAAACATGTTT
1 TCTTGTCTAAATTAAGACAAAACATGTTT
*
393216 TCGTGTCTAAATTAAGAC-AAACATGTT
1 TCTTGTCTAAATTAAGACAAAACATGTT
393243 AAAGCTACCA
Statistics
Matches: 196, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
28 106 0.54
29 83 0.42
30 7 0.04
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (29 bp):
TCTTGTCTAAATTAAGACAAAACATGTTT
Found at i:395235 original size:28 final size:28
Alignment explanation
Indices: 395197--395475 Score: 326
Period size: 28 Copynumber: 9.8 Consensus size: 28
395187 GCTTTGATGT
*
395197 TTTGTCATAATTTAGACAAGAAAACATG
1 TTTGTCTTAATTTAGACAAGAAAACATG
395225 TTTGTCTTAATTTAGACAAGAAAACATG
1 TTTGTCTTAATTTAGACAAGAAAACATG
**
395253 TTATGTCTTAATTTAGATGAGAAAACATG
1 TT-TGTCTTAATTTAGACAAGAAAACATG
* *
395282 TTTGTCTTAATTTAGGCAACAAAACATG
1 TTTGTCTTAATTTAGACAAGAAAACATG
* *
395310 TTTTGTCTTAATGTAGACAAGAAAACTTG
1 -TTTGTCTTAATTTAGACAAGAAAACATG
* *
395339 TTTGTCTTAATTTACACAAGAAAACATA
1 TTTGTCTTAATTTAGACAAGAAAACATG
*
395367 TTTGCCTTAATTTAAGACAAGAAAACTATG
1 TTTGTCTTAATTT-AGACAAGAAAAC-ATG
* *
395397 TCTTGTCTTGATCTAGACAAGAAAACATG
1 T-TTGTCTTAATTTAGACAAGAAAACATG
* * * * *
395426 TTTGGC-TCAGTTAGACAAGATAACATAC
1 TTTGTCTTAATTTAGACAAGAAAACAT-G
*
395454 TTTGTCTTAATTAAAGACAAGA
1 TTTGTCTTAATT-TAGACAAGA
395476 GTTGTCTTAT
Statistics
Matches: 212, Mismatches: 31, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
27 16 0.08
28 96 0.45
29 68 0.32
30 23 0.11
31 9 0.04
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (28 bp):
TTTGTCTTAATTTAGACAAGAAAACATG
Found at i:395281 original size:57 final size:57
Alignment explanation
Indices: 395193--395475 Score: 329
Period size: 57 Copynumber: 4.9 Consensus size: 57
395183 AGCAGCTTTG
*
395193 ATGTTTTGTCATAATTTAGACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAAC
1 ATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAAC
* ** * *
395250 ATGTTATGTCTTAATTTAGATGAGAAAACATGTTTGTCTTAATTTAGGCAACAAAAC
1 ATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAAC
* * *
395307 ATGTTTTGTCTTAATGTAGACAAGAAAACTTGTTTGTCTTAATTTACACAAGAAAAC
1 ATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAAC
* * * *
395364 AT-ATTTGCCTTAATTTAAGACAAGAAAACTATGTCTTGTCTTGATCTAGACAAGAAAAC
1 ATGTTTTGTCTTAATTT-AGACAAGAAAAC-ATGT-TTGTCTTAATTTAGACAAGAAAAC
* * * * * *
395423 ATG-TTTGGC-TCAGTTAGACAAGATAACATACTTTGTCTTAATTAAAGACAAGA
1 ATGTTTTGTCTTAATTTAGACAAGAAAACAT-GTTTGTCTTAATT-TAGACAAGA
395476 GTTGTCTTAT
Statistics
Matches: 191, Mismatches: 29, Indels: 12
0.82 0.12 0.05
Matches are distributed among these distances:
56 22 0.12
57 134 0.70
58 7 0.04
59 28 0.15
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (57 bp):
ATGTTTTGTCTTAATTTAGACAAGAAAACATGTTTGTCTTAATTTAGACAAGAAAAC
Found at i:398740 original size:29 final size:28
Alignment explanation
Indices: 398696--398823 Score: 168
Period size: 29 Copynumber: 4.4 Consensus size: 28
398686 TAGCTTTAAC
398696 ATGTTTG-CTTTAATTTAGACAAGAAAAT
1 ATGTTTGTC-TTAATTTAGACAAGAAAAT
398724 ATGTTTGGTCTTAATTTAGACAAGAAAAT
1 ATGTTT-GTCTTAATTTAGACAAGAAAAT
*
398753 ATGTTTGTCTTAATTTAGGATAAGAAAAAT
1 ATGTTTGTCTTAATTTA-GACAAG-AAAAT
* *
398783 ATTTTTTGTCTTAATTTAGACAAGAAAAC
1 A-TGTTTGTCTTAATTTAGACAAGAAAAT
*
398812 ATATTTGTCTTA
1 ATGTTTGTCTTA
398824 NNNNNNNNNN
Statistics
Matches: 90, Mismatches: 5, Indels: 10
0.86 0.05 0.10
Matches are distributed among these distances:
28 27 0.30
29 36 0.40
30 12 0.13
31 15 0.17
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (28 bp):
ATGTTTGTCTTAATTTAGACAAGAAAAT
Found at i:398798 original size:59 final size:57
Alignment explanation
Indices: 398693--398823 Score: 183
Period size: 59 Copynumber: 2.3 Consensus size: 57
398683 TGGTAGCTTT
398693 AACATGTTTG-CTTTAATTTAGACAAGAAAATATGTTTGGTCTTAATTTAGACAAGAA
1 AACATGTTTGTC-TTAATTTAGACAAGAAAATATGTTTGGTCTTAATTTAGACAAGAA
* * * *
398750 AATATGTTTGTCTTAATTTAGGATAAGAAAAATATTTTTTGTCTTAATTTAGACAAGAA
1 AACATGTTTGTCTTAATTTA-GACAAG-AAAATATGTTTGGTCTTAATTTAGACAAGAA
*
398809 AACATATTTGTCTTA
1 AACATGTTTGTCTTA
398824 NNNNNNNNNN
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 17 0.26
58 6 0.09
59 42 0.65
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (57 bp):
AACATGTTTGTCTTAATTTAGACAAGAAAATATGTTTGGTCTTAATTTAGACAAGAA
Found at i:398995 original size:29 final size:29
Alignment explanation
Indices: 398949--399169 Score: 259
Period size: 29 Copynumber: 7.6 Consensus size: 29
398939 GGCAACTTTG
398949 ACATGTTTTGTCTTAATTTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* * * *
398978 ACATGTTATGCCTCAATTTAGATAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* * * *
399007 ACATGTTATGCCTCAATTTAGATAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
* *
399036 ACAT-TATTTGCCTTAATTTACACAAGAAA
1 ACATGT-TTTGTCTTAATTTAGACAAGAAA
399065 ACATG-TTTGTCTTAATTTAGGACAAGAAAA
1 ACATGTTTTGTCTTAATTTA-GACAAG-AAA
* * *
399095 ATATGTTTTGTCTTGATCTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
399124 ACATG-TTTGTCTCAATTTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
399152 ACGTGTTTTGTCTTAATT
1 ACATGTTTTGTCTTAATT
399170 AAAGACAAAA
Statistics
Matches: 167, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
28 38 0.23
29 104 0.62
30 13 0.08
31 12 0.07
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.36
Consensus pattern (29 bp):
ACATGTTTTGTCTTAATTTAGACAAGAAA
Found at i:401800 original size:21 final size:21
Alignment explanation
Indices: 401776--401815 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
401766 GGAGTTTTCA
* *
401776 TTTTCTTTCTCTTTATTTTAT
1 TTTTATTTCTATTTATTTTAT
*
401797 TTTTATTTTTATTTATTTT
1 TTTTATTTCTATTTATTTT
401816 TCTTAAACAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTATTTCTATTTATTTTAT
Found at i:404765 original size:28 final size:29
Alignment explanation
Indices: 404698--404785 Score: 133
Period size: 29 Copynumber: 3.0 Consensus size: 29
404688 GGCAACTTTG
* *
404698 ACATGTTTTGTCCTAAATTAGACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
*
404727 ACATGTTTTGTCTTAATTTACACAAGAAA
1 ACATGTTTTGTCTTAATTTAGACAAGAAA
404756 ACATG-TTTGTCTTAATTTAGGACAAGAAA
1 ACATGTTTTGTCTTAATTTA-GACAAGAAA
404785 A
1 A
404786 ATATGTNNNN
Statistics
Matches: 54, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
28 14 0.26
29 40 0.74
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (29 bp):
ACATGTTTTGTCTTAATTTAGACAAGAAA
Found at i:417468 original size:23 final size:23
Alignment explanation
Indices: 417418--417466 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
417408 CTAATAAGTA
417418 TTTTAAACATATTTTTTTATAAT
1 TTTTAAACATATTTTTTTATAAT
*
417441 TTTTAAA-TTATTTTATTT-TAAT
1 TTTTAAACATATTTT-TTTATAAT
417463 TTTT
1 TTTT
417467 TACCTTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTAAACATATTTTTTTATAAT
Found at i:418371 original size:20 final size:19
Alignment explanation
Indices: 418334--418372 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
418324 TAATATCTGA
*
418334 AAAAAATTAAAATTATTTT
1 AAAAAATTAAAATAATTTT
*
418353 AAAAAATTTAAATAAATTTT
1 AAAAAATTAAAAT-AATTTT
418373 TATTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAAATTAAAATAATTTT
Found at i:423539 original size:35 final size:35
Alignment explanation
Indices: 423500--423575 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
423490 GTTTCTTTGG
* ** * *
423500 CACGTGCATGATCTGTTCTCCACTCATTGCTTCGA
1 CACGTGCATGACCTACTCTCCACCCATTACTTCGA
*
423535 CACGTGCATGACCTACTCTCCACCCATTACTTCGG
1 CACGTGCATGACCTACTCTCCACCCATTACTTCGA
423570 CACGTG
1 CACGTG
423576 TGTCATATGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.18, C:0.36, G:0.17, T:0.29
Consensus pattern (35 bp):
CACGTGCATGACCTACTCTCCACCCATTACTTCGA
Found at i:424602 original size:26 final size:26
Alignment explanation
Indices: 424566--424636 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
424556 GTCGTGACAA
424566 GCATGATTTATTGAGATTGTTGAATG
1 GCATGATTTATTGAGATTGTTGAATG
424592 GCATGATTTATTGAGATTGTTGAATG
1 GCATGATTTATTGAGATTGTTGAATG
*
424618 GCATGATTTCAATGAGATT
1 GCATGATTT-ATTGAGATT
424637 TGAAATTACA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
26 35 0.81
27 8 0.19
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (26 bp):
GCATGATTTATTGAGATTGTTGAATG
Found at i:426424 original size:20 final size:21
Alignment explanation
Indices: 426393--426435 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
426383 TTTAGAGTTC
426393 TTGATAAAATAA-AACTCCTTA
1 TTGATAAAATAATAACT-CTTA
426414 TTGAT-AAATAATAACTCTTA
1 TTGATAAAATAATAACTCTTA
426434 TT
1 TT
426436 TTATTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (21 bp):
TTGATAAAATAATAACTCTTA
Found at i:431389 original size:21 final size:20
Alignment explanation
Indices: 431361--431406 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
431351 NNNNAACTTA
431361 AAGAAGAAG-AAGAAGAAAAC
1 AAGAAGAAGCAA-AAGAAAAC
*
431381 AAGAGAGAAGCAAAAGAAAAG
1 AAGA-AGAAGCAAAAGAAAAC
431402 AAGAA
1 AAGAA
431407 AAACATGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 16 0.70
22 2 0.09
ACGTcount: A:0.70, C:0.04, G:0.26, T:0.00
Consensus pattern (20 bp):
AAGAAGAAGCAAAAGAAAAC
Found at i:435670 original size:17 final size:17
Alignment explanation
Indices: 435648--435684 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
435638 CTTAAGAATG
* *
435648 ATGGGTTTATAATCCAA
1 ATGGGTTCATAAACCAA
435665 ATGGGTTCATAAACCAA
1 ATGGGTTCATAAACCAA
435682 ATG
1 ATG
435685 AGTCAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (17 bp):
ATGGGTTCATAAACCAA
Found at i:445786 original size:21 final size:21
Alignment explanation
Indices: 445750--445800 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
445740 ATTAGTTGAG
445750 TAGTT-AA-TTTAAGTTACTT
1 TAGTTAAATTTTAAGTTACTT
* *
445769 TAGTTAAATTTTATGTTATTT
1 TAGTTAAATTTTAAGTTACTT
*
445790 TATTTTAAATT
1 TA-GTTAAATT
445801 ACTTTAAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 5 0.19
20 2 0.08
21 12 0.46
22 7 0.27
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (21 bp):
TAGTTAAATTTTAAGTTACTT
Found at i:448226 original size:16 final size:16
Alignment explanation
Indices: 448205--448251 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
448195 TAAACATTAA
448205 AAAAAATCAAGAAAAT
1 AAAAAATCAAGAAAAT
* *
448221 AAAAAATAAAAAAAAT
1 AAAAAATCAAGAAAAT
448237 AGAAAAACTCAAGAA
1 A-AAAAA-TCAAGAA
448252 TTGTATTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 15 0.60
17 5 0.20
18 5 0.20
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.11
Consensus pattern (16 bp):
AAAAAATCAAGAAAAT
Found at i:453119 original size:17 final size:16
Alignment explanation
Indices: 453092--453128 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
453082 ATTTAGGGAT
*
453092 TGCTCCCCTAAGTATG
1 TGCTCCCCTAAATATG
453108 TGCTCACCCTAAATATG
1 TGCTC-CCCTAAATATG
453125 TGCT
1 TGCT
453129 TTAATAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (16 bp):
TGCTCCCCTAAATATG
Found at i:478010 original size:29 final size:29
Alignment explanation
Indices: 477968--478026 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
477958 CAACAAGCAT
477968 CAAAATTCAAAAAAATATATGAAAATAAA
1 CAAAATTCAAAAAAATATATGAAAATAAA
477997 CAAAATTCAAAAAAATATATGAAAATAAA
1 CAAAATTCAAAAAAATATATGAAAATAAA
478026 C
1 C
478027 TAACTTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.20
Consensus pattern (29 bp):
CAAAATTCAAAAAAATATATGAAAATAAA
Found at i:478037 original size:29 final size:29
Alignment explanation
Indices: 477968--478037 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
477958 CAACAAGCAT
*
477968 CAAAATTCAAAAAAATATATGAAAATAAA
1 CAAAATTAAAAAAAATATATGAAAATAAA
*
477997 CAAAATTCAAAAAAATATATGAAAATAAA
1 CAAAATTAAAAAAAATATATGAAAATAAA
* *
478026 CTAACTTAAAAA
1 CAAAATTAAAAA
478038 TATCATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.67, C:0.09, G:0.03, T:0.21
Consensus pattern (29 bp):
CAAAATTAAAAAAAATATATGAAAATAAA
Found at i:480662 original size:56 final size:56
Alignment explanation
Indices: 480597--480706 Score: 166
Period size: 56 Copynumber: 2.0 Consensus size: 56
480587 CCCCCAAACA
* * * * *
480597 GGACTAAAGTTTGGATCATGGTGATGATAGCTAGCTTGATCTCAATATTTTTTGTT
1 GGACTAAAGTTTGAATCATGGAGATGATAGCCAGCTTGATCTCAAAATTGTTTGTT
*
480653 GGACTAAAGTTTGAATCATGGAGATGTTAGCCAGCTTGATCTCAAAATTGTTTG
1 GGACTAAAGTTTGAATCATGGAGATGATAGCCAGCTTGATCTCAAAATTGTTTG
480707 CTTTAAATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (56 bp):
GGACTAAAGTTTGAATCATGGAGATGATAGCCAGCTTGATCTCAAAATTGTTTGTT
Found at i:480954 original size:25 final size:25
Alignment explanation
Indices: 480926--480975 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
480916 AATCTTCAAG
480926 CCTTTTGCTTTTCTCATACAAGGAT
1 CCTTTTGCTTTTCTCATACAAGGAT
480951 CCTTTTGCTTTTCTCATACAAGGAT
1 CCTTTTGCTTTTCTCATACAAGGAT
480976 TGAACGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (25 bp):
CCTTTTGCTTTTCTCATACAAGGAT
Found at i:486490 original size:80 final size:80
Alignment explanation
Indices: 486398--486610 Score: 356
Period size: 80 Copynumber: 2.7 Consensus size: 80
486388 AGATTGTAAC
* *
486398 ATGTATGCCATGAGATGTATGTGTTAAGCATA-TCATATACACTATGGGCTAAGCATGTAAGTGA
1 ATGTATGCCATGAGATGTATGTGTTGAG-ATAGTCATATACACTATGGGCTAAGCATCTAAGTGA
*
486462 TTTATGAGGTTATGAA
65 ATTATGAGGTTATGAA
486478 ATGTATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATCTAAGTGAA
1 ATGTATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATCTAAGTGAA
*
486543 TTATGAGGTTGTGAA
66 TTATGAGGTTATGAA
* *
486558 ATGTATGCTATGAGATGTTTGTGTTGAGATAGTCATATACACTATGGGCTAAG
1 ATGTATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAG
486611 TATGATGATA
Statistics
Matches: 126, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
79 3 0.02
80 123 0.98
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (80 bp):
ATGTATGCCATGAGATGTATGTGTTGAGATAGTCATATACACTATGGGCTAAGCATCTAAGTGAA
TTATGAGGTTATGAA
Found at i:495949 original size:22 final size:22
Alignment explanation
Indices: 495924--495967 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
495914 GGATTTTGAA
*
495924 GATATTAGAACCTTGGTGGAGG
1 GATATTAGAACCTAGGTGGAGG
*
495946 GATATTAGATCCTAGGTGGAGG
1 GATATTAGAACCTAGGTGGAGG
495968 AATTCTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.09, G:0.36, T:0.27
Consensus pattern (22 bp):
GATATTAGAACCTAGGTGGAGG
Found at i:495981 original size:31 final size:30
Alignment explanation
Indices: 495946--496076 Score: 111
Period size: 31 Copynumber: 4.2 Consensus size: 30
495936 TTGGTGGAGG
*
495946 GATATTAGATCCTAGGTGGAGGAATTCTTAA
1 GATATT-GAACCTAGGTGGAGGAATTCTTAA
* **
495977 GATATTGGAACCTCA-ATAAAGGAATTCTTAA
1 GATATT-GAACCT-AGGTGGAGGAATTCTTAA
* * * * *
496008 GATGTTCGTACCTTGGTGGTGGAATTCATAA
1 GATATT-GAACCTAGGTGGAGGAATTCTTAA
* *
496039 AATATTGAAACCTTGGTGGAGGAATTCTTAA
1 GATATTG-AACCTAGGTGGAGGAATTCTTAA
496070 GATATTG
1 GATATTG
496077 GAACTTCGGT
Statistics
Matches: 77, Mismatches: 20, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
30 1 0.01
31 75 0.97
32 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (30 bp):
GATATTGAACCTAGGTGGAGGAATTCTTAA
Found at i:496238 original size:40 final size:40
Alignment explanation
Indices: 496140--496238 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
496130 AAAAGTTTTA
*
496140 AAGCCTCGGTGGAGGAATTCTTATTTCCTTTTAAACTATG
1 AAGCCTCGGTGGAGGAGTTCTTATTTCCTTTTAAACTATG
* * *
496180 AAGCCTCGATGGAGGAGTTTTTATTTCATTTTTAAA-T-TCG
1 AAGCCTCGGTGGAGGAGTTCTTATTTC-CTTTTAAACTAT-G
* *
496220 AAGCCTAGGTGGATGAGTT
1 AAGCCTCGGTGGAGGAGTT
496239 ATAAAAGGTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.02
40 42 0.84
41 7 0.14
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.37
Consensus pattern (40 bp):
AAGCCTCGGTGGAGGAGTTCTTATTTCCTTTTAAACTATG
Found at i:497477 original size:20 final size:21
Alignment explanation
Indices: 497452--497495 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
497442 TTCATATTAC
497452 TTATTT-TAT-TTATTTTGTGT
1 TTATTTATATGTTATTTTGT-T
*
497472 TTATTTATTTGTTATTTTGTT
1 TTATTTATATGTTATTTTGTT
497493 TTA
1 TTA
497496 GATATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 6 0.29
22 9 0.43
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (21 bp):
TTATTTATATGTTATTTTGTT
Found at i:508874 original size:22 final size:20
Alignment explanation
Indices: 508841--508883 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 20
508831 TCAATGCTTA
508841 TATGTGATCATG-AGTTGATT
1 TATGTGATCATGCA-TTGATT
508861 TATGTGGATGCATGCATTGATT
1 TATGT-GAT-CATGCATTGATT
508883 T
1 T
508884 TTACATGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.25
21 3 0.15
22 11 0.55
23 1 0.05
ACGTcount: A:0.23, C:0.07, G:0.26, T:0.44
Consensus pattern (20 bp):
TATGTGATCATGCATTGATT
Found at i:512428 original size:28 final size:29
Alignment explanation
Indices: 512371--512507 Score: 158
Period size: 28 Copynumber: 4.9 Consensus size: 29
512361 TGGCACCTTC
512371 AACATGTTTG-TCTTAATTTAGACAAGAA
1 AACATGTTTGTTCTTAATTTAGACAAGAA
*
512399 AACATGTTTGTTCTTAATTTAGACAAAAA
1 AACATGTTTGTTCTTAATTTAGACAAGAA
* *
512428 AATATGTTTG-TCTTAATTTAAGATAAGAA
1 AACATGTTTGTTCTTAATTT-AGACAAGAA
* * *
512457 AA-ATATTTGTT-TTAATCTAGAGAAGAA
1 AACATGTTTGTTCTTAATTTAGACAAGAA
* *
512484 AACATATTT-TTCTCAATTTAGACA
1 AACATGTTTGTTCTTAATTTAGACA
512508 GGATAAAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
27 12 0.13
28 46 0.49
29 36 0.38
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.39
Consensus pattern (29 bp):
AACATGTTTGTTCTTAATTTAGACAAGAA
Found at i:512466 original size:57 final size:57
Alignment explanation
Indices: 512374--512520 Score: 176
Period size: 57 Copynumber: 2.6 Consensus size: 57
512364 CACCTTCAAC
* *
512374 ATGTTTGTCTTAATTTAGACAAGAAAACATGTTTGTTCTTAATTTAGACAA-AAAA-AT
1 ATGTTTGTCTTAATTTAGACAAGAAAA-ATATTTGTT-TTAATCTAGACAAGAAAACAT
* *
512431 ATGTTTGTCTTAATTTAAGATAAGAAAAATATTTGTTTTAATCTAGAGAAGAAAACAT
1 ATGTTTGTCTTAATTT-AGACAAGAAAAATATTTGTTTTAATCTAGACAAGAAAACAT
* *
512489 AT-TTT-TCTCAATTTAGACAGGATAAAATATTT
1 ATGTTTGTCTTAATTTAGACAAGA-AAAATATTT
512521 TTGTCTTGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
55 6 0.08
56 28 0.35
57 31 0.39
58 14 0.18
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.39
Consensus pattern (57 bp):
ATGTTTGTCTTAATTTAGACAAGAAAAATATTTGTTTTAATCTAGACAAGAAAACAT
Found at i:512518 original size:28 final size:27
Alignment explanation
Indices: 512381--512522 Score: 144
Period size: 28 Copynumber: 5.0 Consensus size: 27
512371 AACATGTTTG
*
512381 TCTTAATTTAGACAAGAAAACATGTTTGT
1 TCTTAATTTAGACAAGAAAA-ATATTT-T
512410 TCTTAATTTAGACAA-AAAAATATGTTT
1 TCTTAATTTAGACAAGAAAAATAT-TTT
*
512437 GTCTTAATTTAAGATAAGAAAAATATTTGT
1 -TCTTAATTT-AGACAAGAAAAATATTT-T
* *
512467 T-TTAATCTAGAGAAGAAAACATATTTT
1 TCTTAATTTAGACAAGAAAA-ATATTTT
* *
512494 TCTCAATTTAGACAGGATAAAATATTTT
1 TCTTAATTTAGACAAGA-AAAATATTTT
512522 T
1 T
512523 GTCTTGATTA
Statistics
Matches: 97, Mismatches: 8, Indels: 17
0.80 0.07 0.14
Matches are distributed among these distances:
27 16 0.16
28 46 0.47
29 26 0.27
30 9 0.09
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.39
Consensus pattern (27 bp):
TCTTAATTTAGACAAGAAAAATATTTT
Found at i:513673 original size:15 final size:15
Alignment explanation
Indices: 513653--513684 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
513643 TCCTAATTTC
*
513653 TTTTAATAAATTAAT
1 TTTTAAAAAATTAAT
513668 TTTTAAAAAATTAAT
1 TTTTAAAAAATTAAT
513683 TT
1 TT
513685 ATTTTAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTAAAAAATTAAT
Found at i:530370 original size:35 final size:35
Alignment explanation
Indices: 530331--530472 Score: 131
Period size: 35 Copynumber: 4.0 Consensus size: 35
530321 TAAGTAAATC
*
530331 ATTGGGCCTAATTAATTAAATTAAATAATTAAGTT
1 ATTGGGCCTAATTGATTAAATTAAATAATTAAGTT
* *** *
530366 ATTGGGTCTAATTGATTAAATTTGTTGAATAAAGTT
1 ATTGGGCCTAATTGATTAAATTAAAT-AATTAAGTT
* * *** *
530402 ATTAGGCCTAATTGATTATATTGTTTAGTTAAGTT
1 ATTGGGCCTAATTGATTAAATTAAATAATTAAGTT
* ** *
530437 GTTGGGCAAAATTGATTAAATTAAACAATTAAGTT
1 ATTGGGCCTAATTGATTAAATTAAATAATTAAGTT
530472 A
1 A
530473 ATTAGACTTC
Statistics
Matches: 82, Mismatches: 24, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
35 53 0.65
36 29 0.35
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (35 bp):
ATTGGGCCTAATTGATTAAATTAAATAATTAAGTT
Found at i:530413 original size:36 final size:35
Alignment explanation
Indices: 530310--530458 Score: 115
Period size: 35 Copynumber: 4.2 Consensus size: 35
530300 TGCCGAGTTC
* *
530310 ATTAAA-TTGTTTAAGTAAA-TCATTGGGCCTAATTA
1 ATTAAATTTG-TTAA-TAAAGTTATTGGGCCTAATTG
*** * *
530345 ATTAAATTAAATAATTAAGTTATTGGGTCTAATTG
1 ATTAAATTTGTTAATAAAGTTATTGGGCCTAATTG
*
530380 ATTAAATTTGTTGAATAAAGTTATTAGGCCTAATTG
1 ATTAAATTTGTT-AATAAAGTTATTGGGCCTAATTG
* * * * **
530416 ATTATA-TTGTTTAGTTAAGTTGTTGGGCAAAATTG
1 ATTAAATTTG-TTAATAAAGTTATTGGGCCTAATTG
530451 ATTAAATT
1 ATTAAATT
530459 AAACAATTAA
Statistics
Matches: 88, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
34 3 0.03
35 56 0.64
36 29 0.33
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (35 bp):
ATTAAATTTGTTAATAAAGTTATTGGGCCTAATTG
Found at i:538202 original size:145 final size:143
Alignment explanation
Indices: 537913--538204 Score: 327
Period size: 145 Copynumber: 2.0 Consensus size: 143
537903 TTAACTGTGG
* * *
537913 TTTTAAATGAGTCTAAGTTAATTAGGCATCAAAAGCTTTGTTACTAGCTTGAAATGAAATATAAA
1 TTTTAAATGAGTATAAGTTAATAAGGCATCAAAAGCTTTGTTACTAGCTTGAAATGAAATACAAA
* * * *
537978 CTAATAATTATTATTTAGAAAAAATATTATTATCAATACTATGATATGTAATTCATTTATAAACT
66 CTAAAAATTATTATTTAGAAAAAATATTATCATCAATACTATGATATATAAATCATTTATAAACT
** *
538043 TATGAAGGACTGA
131 TATGAAACAATGA
* * ** * * *
538056 TTTTAAATGATTATAAGTTAATAATGCATTGAAAGTTTTGTTACTAGCTTGAATGTGATATACAA
1 TTTTAAATGAGTATAAGTTAATAAGGCATCAAAAGCTTTGTTACTAGCTTGAA-ATGAAATACAA
* * * * *
538121 ATTAAAAATTATTATTTTAGATAACATATTATCATTAATA-TCATGATATATAAATCATTTGTAA
65 ACTAAAAATTATTA-TTTAGAAAAAATATTATCATCAATACT-ATGATATATAAATCATTTATAA
*
538185 TCTTAT-AAACATATGA
128 ACTTATGAAACA-ATGA
538201 TTTT
1 TTTT
538205 TACTGTTTAA
Statistics
Matches: 122, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
143 46 0.38
144 24 0.20
145 52 0.43
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (143 bp):
TTTTAAATGAGTATAAGTTAATAAGGCATCAAAAGCTTTGTTACTAGCTTGAAATGAAATACAAA
CTAAAAATTATTATTTAGAAAAAATATTATCATCAATACTATGATATATAAATCATTTATAAACT
TATGAAACAATGA
Found at i:544915 original size:73 final size:73
Alignment explanation
Indices: 544722--544916 Score: 207
Period size: 73 Copynumber: 2.7 Consensus size: 73
544712 CAAGTAGAAT
* * * *
544722 GCTCTTAGACGACTAAT-ATGCTTCTTAGTTGATTAAGTCGTTTCTATCTTTTGATCCCAGCTTC
1 GCTCTTAGTCGACTAATAATGCTTCTTAGTTGATTAAGT-GTTTCTGTCGTTTGAACCCAGCTTC
*
544786 TGGCAGTGA
65 TGGCAGTAA
* * ** * * *
544795 GCTCATAGTTGACTAGCAATGCTTCTTAGTCGATTAAGTTATTTCTGT-GTTTGAACCCAGTTTC
1 GCTCTTAGTCGACTAATAATGCTTCTTAGTTGATTAAG-TGTTTCTGTCGTTTGAACCCAGCTTC
544859 TGGCAGTAA
65 TGGCAGTAA
* *
544868 GCTCTTAGTCGACTAATAATG-TCTCTTCGTTGACTAAGTGTTCTCTGTC
1 GCTCTTAGTCGACTAATAATGCT-TCTTAGTTGATTAAGTGTT-TCTGTC
544917 TCACAATTTG
Statistics
Matches: 97, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
72 4 0.04
73 67 0.69
74 25 0.26
75 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (73 bp):
GCTCTTAGTCGACTAATAATGCTTCTTAGTTGATTAAGTGTTTCTGTCGTTTGAACCCAGCTTCT
GGCAGTAA
Found at i:548634 original size:17 final size:17
Alignment explanation
Indices: 548612--548653 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
548602 TGCAGGGATC
548612 AAGCATAATTTACTCCT
1 AAGCATAATTTACTCCT
*
548629 AAGCATAATTTATTCCT
1 AAGCATAATTTACTCCT
548646 AAGCATAA
1 AAGCATAA
548654 CCAGCTGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.33
Consensus pattern (17 bp):
AAGCATAATTTACTCCT
Found at i:565363 original size:29 final size:29
Alignment explanation
Indices: 565331--565387 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
565321 GGATATTCAA
* *
565331 TATATCTTGCTTAGCTAATGTGGATATTG
1 TATATCTTACTTAGCTAATATGGATATTG
* *
565360 TATATCTTATTTAGCTATTATGGATATT
1 TATATCTTACTTAGCTAATATGGATATT
565388 ATAAATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.16, T:0.49
Consensus pattern (29 bp):
TATATCTTACTTAGCTAATATGGATATTG
Found at i:567044 original size:2 final size:2
Alignment explanation
Indices: 567001--567028 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
566991 ACCATGGAGT
567001 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
567029 CACACACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:591600 original size:28 final size:29
Alignment explanation
Indices: 591567--591733 Score: 198
Period size: 30 Copynumber: 5.8 Consensus size: 29
591557 GTAGTTTAAC
*
591567 ATGTTTGTCTTAATTTAGACAAAAAAACT
1 ATGTTTGTCTTAATTTAGACAAAAAAAAT
* * *
591596 -TGTTTGGTCTTAATTTAGA-TAAGAAAGT
1 ATGTTT-GTCTTAATTTAGACAAAAAAAAT
591624 ATGTTTGTCTTAATTTAGACAAAAAAAAAT
1 ATGTTTGTCTTAATTTAGAC-AAAAAAAAT
*
591654 ATTTTTGTCTTAATTTAGACAAAAAAAAAT
1 ATGTTTGTCTTAATTTAGAC-AAAAAAAAT
*
591684 ATTTTTGTCTTAATTTAGACAAAAAAACAT
1 ATGTTTGTCTTAATTTAGACAAAAAAA-AT
* *
591714 A--TTTGTCTTCATTTAAACAA
1 ATGTTTGTCTTAATTTAGACAA
591734 GATAGAATAT
Statistics
Matches: 124, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
28 41 0.33
29 25 0.20
30 58 0.47
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.40
Consensus pattern (29 bp):
ATGTTTGTCTTAATTTAGACAAAAAAAAT
Found at i:591663 original size:30 final size:30
Alignment explanation
Indices: 591570--591756 Score: 197
Period size: 30 Copynumber: 6.4 Consensus size: 30
591560 GTTTAACATG
*
591570 TTTGTCTTAATTTAGAC-AAAAAAACT-TGT
1 TTTGTCTTAATTTAGACAAAAAAAAATAT-T
* * * * *
591599 TTGGTCTTAATTTAG--ATAAGAAAGTATG
1 TTTGTCTTAATTTAGACAAAAAAAAATATT
591627 TTTGTCTTAATTTAGACAAAAAAAAATATT
1 TTTGTCTTAATTTAGACAAAAAAAAATATT
591657 TTTGTCTTAATTTAGACAAAAAAAAATATT
1 TTTGTCTTAATTTAGACAAAAAAAAATATT
*
591687 TTTGTCTTAATTTAGACAAAAAAACATA--
1 TTTGTCTTAATTTAGACAAAAAAAAATATT
* * * * *
591715 TTTGTCTTCATTTAAACAAGATAGAATATT
1 TTTGTCTTAATTTAGACAAAAAAAAATATT
* *
591745 TTTATCATAATT
1 TTTGTCTTAATT
591757 AAAGGCAAGA
Statistics
Matches: 132, Mismatches: 20, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
28 42 0.32
29 15 0.11
30 75 0.57
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (30 bp):
TTTGTCTTAATTTAGACAAAAAAAAATATT
Found at i:591708 original size:58 final size:58
Alignment explanation
Indices: 591570--591756 Score: 191
Period size: 58 Copynumber: 3.2 Consensus size: 58
591560 GTTTAACATG
* * * * *
591570 TTTGTCTTAATTTAGACAAAAAAACT-TGTTTGGTCTTAATTTAG--ATAAGAAAGTATG
1 TTTGTCTTAATTTAGACAAAAAAA-TAT-TTTTGTCTTAATTTAGACAAAAAAAAATATT
591627 TTTGTCTTAATTTAGACAAAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT
1 TTTGTCTTAATTTAGAC--AAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT
* * * * * * *
591687 TTTGTCTTAATTTAGACAAAAAAACATATTTGTCTTCATTTAAACAAGATAGAATATT
1 TTTGTCTTAATTTAGACAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT
* *
591745 TTTATCATAATT
1 TTTGTCTTAATT
591757 AAAGGCAAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
57 17 0.15
58 60 0.54
59 8 0.07
60 26 0.23
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (58 bp):
TTTGTCTTAATTTAGACAAAAAAATATTTTTGTCTTAATTTAGACAAAAAAAAATATT
Found at i:595558 original size:18 final size:18
Alignment explanation
Indices: 595537--595572 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
595527 ATCAACGTTC
* *
595537 GAAATTCATCCCTTATCA
1 GAAATTCACCCCTCATCA
595555 GAAATTCACCCCTCATCA
1 GAAATTCACCCCTCATCA
595573 AACAACTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.33, G:0.06, T:0.28
Consensus pattern (18 bp):
GAAATTCACCCCTCATCA
Found at i:598023 original size:35 final size:35
Alignment explanation
Indices: 597995--598251 Score: 261
Period size: 35 Copynumber: 7.3 Consensus size: 35
597985 CTTAATTGTT
*
597995 TAATTTAATCAATTAGGCTTAATAACTTAATTAAA
1 TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
* * *
598030 TAATTTAATTAATTAAGGCC-AACAATTTAATTAAA
1 TAATTTAATCAATT-AGGCCTAATAACTTAATTAAA
* *
598065 CAATTTTAATCAATTAGGCCTAATGACTTAATTAAA
1 TAA-TTTAATCAATTAGGCCTAATAACTTAATTAAA
* * ***
598101 CAAATTTAATCAATTAGGCCCAATAACTTAATTGTT
1 -TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
* *
598137 TAATTTAATTAATTAGGCCTAATGACTTAATTAAA
1 TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
* * * * *
598172 CAATTTAATTAATTAGGCATAATGATTTAATTAAA
1 TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
* *
598207 CAATTTAATTAATTAGG-C--ATAACTTAATTAAA
1 TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
*
598239 CAATTTTAATCAA
1 TAA-TTTAATCAA
598252 GTGCTTGAGA
Statistics
Matches: 188, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
32 15 0.08
33 8 0.04
35 110 0.59
36 53 0.28
37 2 0.01
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (35 bp):
TAATTTAATCAATTAGGCCTAATAACTTAATTAAA
Found at i:598079 original size:71 final size:69
Alignment explanation
Indices: 597996--598244 Score: 297
Period size: 71 Copynumber: 3.6 Consensus size: 69
597986 TTAATTGTTT
* * *
597996 AATTTAATCAATTAGGCTTAATAACTTAATTAAATAATTTAATTAATTAAGGCCAACAATTTAAT
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATT-AGGCCAATAATTTAAT
598061 TAAAC
65 TAAAC
* * *
598066 AATTTTAATCAATTAGGCCTAATGACTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTA
1 AA-TTTAATCAATTAGGCCTAATAACTTAATTAAAC-AATTTAATTAATTAGG-CCAATAATTTA
****
598131 ATTGTTT
63 ATTAAAC
* * * *
598138 AATTTAATTAATTAGGCCTAATGACTTAATTAAACAATTTAATTAATTAGGCATAATGATTTAAT
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATTAGGC-CAATAATTTAAT
598203 TAAAC
65 TAAAC
*
598208 AATTTAATTAATTAGG-C--ATAACTTAATTAAACAATTT
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTT
598245 TAATCAAGTG
Statistics
Matches: 155, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
67 19 0.12
69 2 0.01
70 43 0.28
71 65 0.42
72 26 0.17
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.38
Consensus pattern (69 bp):
AATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATTAGGCCAATAATTTAATT
AAAC
Found at i:598139 original size:142 final size:138
Alignment explanation
Indices: 597982--598251 Score: 398
Period size: 142 Copynumber: 1.9 Consensus size: 138
597972 GAAGCCTAGC
* *
597982 TAACTTAATTGTTTAATTTAATCAATTAGGCTTAATAACTTAATTAAATAATTTAATTAATTAAG
1 TAACTTAATTGTTTAATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATT-AG
*
598047 GC-CAACAATTTAATTAAACAATTTTAATCAATTAGGCCTAATGACTTAATTAAACAAATTTAAT
65 GCACAACAATTTAATTAAACAA-TTTAATCAATTAGG-C--ATAACTTAATTAAACAAATTTAAT
598111 CAATTAGGCCCAA
126 CAATTAGGCCCAA
* *
598124 TAACTTAATTGTTTAATTTAATTAATTAGGCCTAATGACTTAATTAAACAATTTAATTAATTAGG
1 TAACTTAATTGTTTAATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATTAGG
* ** * *
598189 CATAATGATTTAATTAAACAATTTAATTAATTAGGCATAACTTAATTAAACAATTTTAATCAA
66 CACAACAATTTAATTAAACAATTTAATCAATTAGGCATAACTTAATTAAACAAATTTAATCAA
598252 GTGCTTGAGA
Statistics
Matches: 117, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
138 25 0.21
140 1 0.01
141 17 0.15
142 74 0.63
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (138 bp):
TAACTTAATTGTTTAATTTAATCAATTAGGCCTAATAACTTAATTAAACAATTTAATTAATTAGG
CACAACAATTTAATTAAACAATTTAATCAATTAGGCATAACTTAATTAAACAAATTTAATCAATT
AGGCCCAA
Found at i:598549 original size:15 final size:16
Alignment explanation
Indices: 598526--598556 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
598516 TCAAGATGGT
598526 TTGACTCAACCTTTCA
1 TTGACTCAACCTTTCA
598542 TTGA-TCAACCTTTCA
1 TTGACTCAACCTTTCA
598557 ATGTAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (16 bp):
TTGACTCAACCTTTCA
Found at i:598911 original size:14 final size:15
Alignment explanation
Indices: 598872--598911 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
598862 CATAATAAAC
598872 TAATATT-TTATTAA
1 TAATATTATTATTAA
*
598886 TAAAATTA-TATTAA
1 TAATATTATTATTAA
598900 -AATATTATTATT
1 TAATATTATTATT
598912 TTGCCTATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAATATTATTATTAA
Found at i:599406 original size:15 final size:16
Alignment explanation
Indices: 599372--599408 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
599362 GTGTGGGGAA
599372 CATGTGGGGCCCCTAT
1 CATGTGGGGCCCCTAT
599388 CATGTGGGGCCCC-AT
1 CATGTGGGGCCCCTAT
599403 CATGTG
1 CATGTG
599409 AAGTAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.14, C:0.30, G:0.32, T:0.24
Consensus pattern (16 bp):
CATGTGGGGCCCCTAT
Found at i:616858 original size:22 final size:23
Alignment explanation
Indices: 616817--616861 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
616807 TTTTGATGAT
616817 TTGATTGATAAAATAATATTTTA
1 TTGATTGATAAAATAATATTTTA
* *
616840 TTGATT-ATAGAATATTATTTTA
1 TTGATTGATAAAATAATATTTTA
616862 ATGAGTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (23 bp):
TTGATTGATAAAATAATATTTTA
Done.