Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399055.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2330.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4364
ACGTcount: A:0.23, C:0.09, G:0.08, T:0.23

Warning! 1592 characters in sequence are not A, C, G, or T


Found at i:1511 original size:172 final size:172

Alignment explanation


    Indices: 1331--1765  Score: 518
    Period size: 172  Copynumber: 2.5  Consensus size: 172

       1321 NNNGTAAGAG

                             **                    *                         
       1331 AAGTCCATTTATAGTCATTCATTCCTTTAAAAGCCTTATTACTCACTTTAAATGATTTTATAATC
          1 AAGTCCATTTATAGTCACCCATTCCTTTAAAAGCCTTATGACTCACTTTAAATGATTTTATAATC

            *                            *        *                          
       1396 GCAAAATTCATTTAAATTTGAAATCAT-TGTACATTTTTGGTTAAAACAGACTAGAATT-AAATG
         66 TCAAAATTCATTTAAATTTGAAATC-TCTATACATTTTAGGTTAAAACAGACTAGAATTGAAA-G

             *                                           
       1459 TTTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGGAAAT-AA
        129 TCTACCTTGAGAAACATAAAGAAAAAAGCATTCATT-GAAATGAA

                                       *          **********                 
       1503 AAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCTTANNNNNNNNNNTAAAT-AGTTTTATAAT
          1 AAGTCCATTTATAGTCACCCATTCCTTTAAAAGCCTTATGACTCACTTTAAATGA-TTTTATAAT

                     *             *        *                * *             
       1567 CTCAAAATTTATTTAAATTTGAATTCTCTATATATTTTAGGTTAAAACATATTAGAATTGAAAGT
         65 CTCAAAATTCATTTAAATTTGAAATCTCTATACATTTTAGGTTAAAACAGACTAGAATTGAAAGT

                            *     *   *          *     
       1632 CTACCTTGAGAAACATGAAGAAGAAATCATTCATTGATATGAA
        130 CTACCTTGAGAAACATAAAGAAAAAAGCATTCATTGAAATGAA

                                   *        **                               
       1675 AAGTCCATTTATAGTCACCCATTTCTTTAAAATTCTTATGACTCACTTTAAATGATTTTATAATC
          1 AAGTCCATTTATAGTCACCCATTCCTTTAAAAGCCTTATGACTCACTTTAAATGATTTTATAATC

                 *  *                 
       1740 TCAAAGTTGATTTAAATTTGAAATCT
         66 TCAAAATTCATTTAAATTTGAAATCT

       1766 TTGNNNNNNN


Statistics
Matches: 215,  Mismatches: 43, Indels: 10
        0.80            0.16        0.04

Matches are distributed among these distances:
 171    6  0.03
 172  205  0.95
 173    4  0.02

ACGTcount: A:0.38, C:0.14, G:0.10, T:0.37


Consensus pattern (172 bp):   
AAGTCCATTTATAGTCACCCATTCCTTTAAAAGCCTTATGACTCACTTTAAATGATTTTATAATC
TCAAAATTCATTTAAATTTGAAATCTCTATACATTTTAGGTTAAAACAGACTAGAATTGAAAGTC
TACCTTGAGAAACATAAAGAAAAAAGCATTCATTGAAATGAA
Done.