Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399069.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2343.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10093
ACGTcount: A:0.20, C:0.08, G:0.06, T:0.21

Warning! 4540 characters in sequence are not A, C, G, or T


Found at i:980 original size:172 final size:171

Alignment explanation


    Indices: 683--998  Score: 416
    Period size: 172  Copynumber: 1.8  Consensus size: 171

        673 NNNNNNNNNN

                         * *                               *      **    ** **
        683 ATAAGGCTTTTGAGGGAATGAGTGACAATAAATGGACTTTTCTTCTCCATGAATTTCTTTTTCTT
          1 ATAAGGCTTTTGAAGAAATGAGTGACAATAAATGGACTTTTCTTCTCAATGAATGGCTTTCACGA

            *                     *                 * *                  *   
        748 TATGTTTCTTAAGACAAGCATTTAATTATAATCTATTTTATTGAAAAATATAAAAAAATTTTACT
         66 CATGTTTCTTAAGACAAGCATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATTTAACT

                                                     
        813 TAAAATCAATTATGAGATTAGAAAACTATTTAAAGCTAATA
        131 TAAAATCAATTATGAGATTAGAAAACTATTTAAAGCTAATA

                                *     *                                      
        854 ATAAGGCTTTTGAAGAAATGGGTGACTATAAATGGACTTTTCTTTCTCAATGAATGGCTTTCACG
          1 ATAAGGCTTTTGAAGAAATGAGTGACAATAAATGGACTTTTC-TTCTCAATGAATGGCTTTCACG

                          ** *       *     *   *                             
        919 ACATGTTTCTTAAGGTAGGCATTCAGTTATAGTCTGTTTTAATAAAAAATATAAAAAAATTTAAC
         65 ACATGTTTCTTAAGACAAGCATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATTTAAC

                   *       
        984 TTAAAATTAATTATG
        130 TTAAAATCAATTATG

        999 NNNNNNNNNN


Statistics
Matches: 121,  Mismatches: 23, Indels: 1
        0.83            0.16        0.01

Matches are distributed among these distances:
 171   38  0.31
 172   83  0.69

ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39


Consensus pattern (171 bp):   
ATAAGGCTTTTGAAGAAATGAGTGACAATAAATGGACTTTTCTTCTCAATGAATGGCTTTCACGA
CATGTTTCTTAAGACAAGCATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATTTAACT
TAAAATCAATTATGAGATTAGAAAACTATTTAAAGCTAATA
Done.