Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399082.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2356.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2832
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.24

Warning! 895 characters in sequence are not A, C, G, or T


Found at i:300 original size:35 final size:35

Alignment explanation


    Indices: 253--364  Score: 156
    Period size: 35  Copynumber: 3.2  Consensus size: 35

        243 NCAAGCTTTT

                                   *            
        253 ACAATGGCTTTTCACAA-GTTCAGCCACAACCTTCA
          1 ACAATGGCTTTTCA-AAGGTTCAACCACAACCTTCA

                   *                     *      
        288 ACAATGGTTTTTCAAAGGCTT-AACCACAGCCTTCA
          1 ACAATGGCTTTTCAAAGG-TTCAACCACAACCTTCA

                              *                
        323 ACAATGGCTTTTCAAAGGCTCAACCACAACCTTCA
          1 ACAATGGCTTTTCAAAGGTTCAACCACAACCTTCA

                   
        358 ACAATGG
          1 ACAATGG

        365 TTGTTCTCTG


Statistics
Matches: 68,  Mismatches: 6, Indels: 6
        0.85            0.08        0.08

Matches are distributed among these distances:
  34    3  0.04
  35   63  0.93
  36    2  0.03

ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25


Consensus pattern (35 bp):   
ACAATGGCTTTTCAAAGGTTCAACCACAACCTTCA
Done.