Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399087.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2363.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2355
ACGTcount: A:0.10, C:0.04, G:0.05, T:0.09

Warning! 1722 characters in sequence are not A, C, G, or T


Found at i:2289 original size:23 final size:23

Alignment explanation


    Indices: 2263--2350  Score: 149
    Period size: 23  Copynumber: 3.8  Consensus size: 23

       2253 GAAGATCAAG

                                   
       2263 CAACGGCGAAGTTCGTGATAAAT
          1 CAACGGCGAAGTTCGTGATAAAT

                      *        *  *
       2286 CAACGGCGAAATTCGTGATCAAG
          1 CAACGGCGAAGTTCGTGATAAAT

                                   
       2309 CAACGGCGAAGTTCGTGATAAAT
          1 CAACGGCGAAGTTCGTGATAAAT

                               
       2332 CAACGGCGAAGTTCGTGAT
          1 CAACGGCGAAGTTCGTGAT

       2351 CAAGC


Statistics
Matches: 59,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  23   59  1.00

ACGTcount: A:0.33, C:0.19, G:0.27, T:0.20


Consensus pattern (23 bp):   
CAACGGCGAAGTTCGTGATAAAT

Found at i:2323 original size:46 final size:46

Alignment explanation


    Indices: 2256--2355  Score: 191
    Period size: 46  Copynumber: 2.2  Consensus size: 46

       2246 CTGGGGTGAA

                                                          
       2256 GATCAAGCAACGGCGAAGTTCGTGATAAATCAACGGCGAAATTCGT
          1 GATCAAGCAACGGCGAAGTTCGTGATAAATCAACGGCGAAATTCGT

                                                    *     
       2302 GATCAAGCAACGGCGAAGTTCGTGATAAATCAACGGCGAAGTTCGT
          1 GATCAAGCAACGGCGAAGTTCGTGATAAATCAACGGCGAAATTCGT

                    
       2348 GATCAAGC
          1 GATCAAGC


Statistics
Matches: 53,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  46   53  1.00

ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19


Consensus pattern (46 bp):   
GATCAAGCAACGGCGAAGTTCGTGATAAATCAACGGCGAAATTCGT
Done.