Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399091.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2367.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3536
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.25

Warning! 1074 characters in sequence are not A, C, G, or T


Found at i:1374 original size:171 final size:159

Alignment explanation


    Indices: 1186--1503  Score: 327
    Period size: 169  Copynumber: 1.9  Consensus size: 159

       1176 AAGGTTTTTG

                    **                        *    *             *           
       1186 AAGGAATGACTGACTATAAATAAACTTTTCTTACGAATGCATGTCTTTTTTTTTACGTTTCTTA-
          1 AAGGAATGGGTGACTATAAATAAACTTTTCTTACCAATGAATG--TTTTTTTTCACGTTTC-TAG

                               **                                            
       1250 AGGTAAAAATTCAATTATAGTCTATTTTAA-AGAAAAATGTAAAAAAATTAAACTTAAAA-CTAA
         63 AGGTAAAAATTCAATTATAACCTATTTTAACA-AAAAATGTAAAAAAATTAAACTTAAAATC-AA

                                              
       1313 TTATAAGATTATAAAACCATTTAAAGTGAGCAAT
        126 TTATAAGATTATAAAACCATTTAAAGTGAGCAAT

                                            *                                
       1347 AAGGNNNNNNNNNNAATGGGTGACTATAAATAGACTTTTCTTACCAATGAATGTTTTTTTTCACG
          1 AAGG----------AATGGGTGACTATAAATAAACTTTTCTTACCAATGAATGTTTTTTTTCACG

                        * *   *    *      *            *        *   *        
       1412 TTTCTAGAGGTAGACATTGAATTTTAACCTGTTTTAACAAAAAGTGTAAAAATATTCAACTTAAA
         56 TTTCTAGAGGTAAAAATTCAATTATAACCTATTTTAACAAAAAATGTAAAAAAATTAAACTTAAA

                     *                 
       1477 ATCAATTATGAGATTATAAAACCATTT
        121 ATCAATTATAAGATTATAAAACCATTT

       1504 NNNNNNNNNN


Statistics
Matches: 127,  Mismatches: 17, Indels: 18
        0.78            0.10        0.11

Matches are distributed among these distances:
 161    4  0.03
 168    2  0.02
 169   85  0.67
 170    2  0.02
 171   34  0.27

ACGTcount: A:0.40, C:0.10, G:0.12, T:0.35


Consensus pattern (159 bp):   
AAGGAATGGGTGACTATAAATAAACTTTTCTTACCAATGAATGTTTTTTTTCACGTTTCTAGAGG
TAAAAATTCAATTATAACCTATTTTAACAAAAAATGTAAAAAAATTAAACTTAAAATCAATTATA
AGATTATAAAACCATTTAAAGTGAGCAAT
Done.