Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399095.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2371.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2287
ACGTcount: A:0.18, C:0.08, G:0.06, T:0.18

Warning! 1133 characters in sequence are not A, C, G, or T


Found at i:2283 original size:172 final size:169

Alignment explanation


    Indices: 1754--2287  Score: 437
    Period size: 171  Copynumber: 3.1  Consensus size: 169

       1744 NNNNNNNNNN

                                          *               *       * *    **  
       1754 AATGGTTTTATAATCTCATAATTGATTTTAGGTTGAATT-TTTTTACATTTTTGAACAAAAGGTA
          1 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTTTATATTTTT-TATAAAACATA

                       *                                                     
       1818 CTATAATTGAACGTTTACCTCGAGAAACGTAAAGAAACAAGCATTCATTGACAAGAAAAGTCCAT
         65 CTATAATTGAATGTTTACCTCGAGAAACGTAAAGAAACAAGCATTCATTGACAAGAAAAGTCCAT

               **************                        *
       1883 TNNNNNNNNNNNNNNNNTTCAAAAGGCTTATTACTCGCTTTT
        130 T--AGAGTAACCATTCCTTCAAAAGGCTTATTACTCGCTTTA

                                         *                       *       * * 
       1925 AATGGTTTTATAATCTCATAATTGATTTTGAGTTGAATTGTTTTGTAT-TTTTGT-TAAAATAGA
          1 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTT-TATATTTTTTATAAAACATA

            *           *** *   * *       **               *     *  *        
       1988 TTATAATTGAATACATGCCTTGGGAAACGTGCAGAAA-AAGCTTATTAATTGAGAACAAAAGTCC
         65 CTATAATTGAATGTTTACCTCGAGAAACGTAAAGAAACAAGC--ATTCATTGACAAGAAAAGTCC

                 *   *           *  **********          
       2052 ATTTATAGTCACTCATTCCTTGAANNNNNNNNNNACTCGCTTTA
        128 A-TTAGAGTAAC-CATTCCTTCAAAAGGCTTATTACTCGCTTTA

              *              *                                               
       2096 AACGGTTTTATAATCTCGTAATTGATTTTAAGTTGAATTGTTTTTATATTTTTTATGAAAACATA
          1 AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTTTATATTTTTTAT-AAAACATA

                      *                                                 *    
       2161 CTATAATTGATTGTTTACCTCGAGAAACGTAAAGAAACAAGCATTCATTGACAAGAAAAGCCCAT
         65 CTATAATTGAATGTTTACCTCGAGAAACGTAAAGAAACAAGCATTCATTGACAAGAAAAGTCCAT

                                                 *    
       2226 ATAGAGTAATCCATTCCTTCAAAAGGCTTATTACTCGATTTA
        130 -TAGAGTAA-CCATTCCTTCAAAAGGCTTATTACTCGCTTTA

                                
       2268 AATGGTTTTATAATCTCATA
          1 AATGGTTTTATAATCTCATA


Statistics
Matches: 267,  Mismatches: 84, Indels: 23
        0.71            0.22        0.06

Matches are distributed among these distances:
 169    4  0.01
 170   35  0.13
 171  116  0.43
 172   72  0.27
 173   36  0.13
 174    4  0.01

ACGTcount: A:0.33, C:0.12, G:0.13, T:0.36


Consensus pattern (169 bp):   
AATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTGTTTTTATATTTTTTATAAAACATAC
TATAATTGAATGTTTACCTCGAGAAACGTAAAGAAACAAGCATTCATTGACAAGAAAAGTCCATT
AGAGTAACCATTCCTTCAAAAGGCTTATTACTCGCTTTA
Done.