Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399104.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_238.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9590
ACGTcount: A:0.18, C:0.07, G:0.06, T:0.18

Warning! 4868 characters in sequence are not A, C, G, or T


Found at i:5918 original size:53 final size:53

Alignment explanation


    Indices: 5835--5936  Score: 143
    Period size: 53  Copynumber: 1.9  Consensus size: 53

       5825 AAAACAGATT

                              **                      *          
       5835 ATAATTGAATATCTACCTTGAAAATCGTGAAGAAAAAGATATTCATTGGTCAG
          1 ATAATTGAATATCTACCTCAAAAATCGTGAAGAAAAAGATATCCATTGGTCAG

                      *                         *             
       5888 ATAATTGAATGTCTACCTCAAGAAAT-GTGAAGAAATAGATATCCATTGG
          1 ATAATTGAATATCTACCTCAA-AAATCGTGAAGAAAAAGATATCCATTGG

       5937 CANNNNNNNN


Statistics
Matches: 43,  Mismatches: 5, Indels: 2
        0.86            0.10        0.04

Matches are distributed among these distances:
  53   39  0.91
  54    4  0.09

ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29


Consensus pattern (53 bp):   
ATAATTGAATATCTACCTCAAAAATCGTGAAGAAAAAGATATCCATTGGTCAG
Done.