Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397439.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_309.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18029

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108--587
171
2.8
168
79
5
462
38
12
11
36
1.78
836--1207
172
2.2
171
77
5
390
36
11
12
37
1.79
1851--8198
171
37.2
170
79
4
5270
39
11
12
35
1.80
8200--9639
170
8.4
168
76
6
1076
39
10
14
35
1.81
8200--9639
173
8.4
170
76
6
1078
39
10
14
35
1.81
10679--11080
170
2.3
171
82
7
501
38
11
12
37
1.79
12357--13156
171
4.7
171
75
6
564
39
10
13
34
1.78
12358--13156
343
2.3
345
78
5
762
39
10
13
34
1.78
13332--14079
173
4.4
172
77
6
538
38
11
15
33
1.83
13303--15715
172
14.2
169
70
13
955
38
11
14
35
1.81
14096--15715
170
9.5
169
77
7
1319
38
10
13
36
1.80
15713--17974
172
13.2
171
78
7
1813
39
11
13
35
1.81
15728--18029
343
6.7
340
77
7
1893
39
11
13
35
1.81

Tables:   1

The End!