Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399142.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2417.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 917

Length: 1529
ACGTcount: A:0.21, C:0.08, G:0.08, T:0.21

Warning! 656 characters in sequence are not A, C, G, or T


Found at i:1103 original size:170 final size:154

Alignment explanation


    Indices: 887--1207  Score: 245
    Period size: 170  Copynumber: 2.0  Consensus size: 154

        877 ATTACAACAA

                                      *  *      *                      *     
        887 CATTTAAAGTGAGTAATAAGGCTTTTGAAGGTATGGTTGACTATAAATAGACTTTTCTAGCCAAT
          1 CATTTAAAGTGAGTAATAAGGCTTTTCAAAGTATGGGTGACTATAAATAGACTTTTCTACCCAAT

                                *                                            
        952 GAAAACCATTTTCTTCACGTTTCTCGAA-ATAAACATTCAATTATAATATG-TTTTAATAAAAAA
         66 GAAAACCATTTTCTTCACGTCTCTC-AAGATAAACATTCAATTATAATATGTTTTTAATAAAAAA

                        *                              
       1015 -TATAAAAAATTTAAATTAAAANNNNNNNNNNNNNNNNNAAAT
        130 CTA-AAAAAATTCAAATTAAAA-----------------AAAT

                       *                            *        * *       *     
       1057 CATTTAAAGTGTGTAATAAGGC-TTTCAAAGTCATGGGTGGCTATAAATGGGCTTTTCTTCCCAA
          1 CATTTAAAGTGAGTAATAAGGCTTTTCAAAGT-ATGGGTGACTATAAATAGACTTTTCTACCCAA

              * * * *         *    *     *  *                                
       1121 TGGATATCTTTTTCTTCATGTCTGTCAAGGTAGACATTCAATTATAATATGTTTTTAATAAAAAA
         65 TGAAAACCATTTTCTTCACGTCTCTCAAGATAAACATTCAATTATAATATGTTTTTAATAAAAAA

                           *      
       1186 CGTAAAAAAATTCAACTTAAAA
        130 C-TAAAAAAATTCAAATTAAAA

       1208 TCACTTGTGA


Statistics
Matches: 126,  Mismatches: 20, Indels: 8
        0.82            0.13        0.05

Matches are distributed among these distances:
 169    9  0.07
 170   86  0.68
 171   13  0.10
 172   16  0.13
 173    2  0.02

ACGTcount: A:0.37, C:0.11, G:0.12, T:0.34


Consensus pattern (154 bp):   
CATTTAAAGTGAGTAATAAGGCTTTTCAAAGTATGGGTGACTATAAATAGACTTTTCTACCCAAT
GAAAACCATTTTCTTCACGTCTCTCAAGATAAACATTCAATTATAATATGTTTTTAATAAAAAAC
TAAAAAAATTCAAATTAAAAAAAT
Done.