Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399155.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2429.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4433
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.21

Warning! 1973 characters in sequence are not A, C, G, or T


Found at i:3604 original size:171 final size:170

Alignment explanation


    Indices: 3323--3758  Score: 480
    Period size: 171  Copynumber: 2.5  Consensus size: 170

       3313 ATTTACCTTG

                        *                                      * *           
       3323 AGAAACGTGAAGGAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTAGCTCATGCCTTC-A
          1 AGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTAT-GTAACCCATGCCTTCGA

               **                                  *                         
       3387 GAATTCTTATTACTCGCTTTAAATATTTTTATAAACTCATAATTGATTTTAATTTCAATTTTTTT
         65 -AAACCTTATTACTCGCTTTAAATATTTTTATAAACTCACAATTGATTTTAATTTCAATTTTTTT

                                  *     *             
       3452 ATATTTTTTATTAAAATAGATTGTAATTGAATATCTGTCTCA
        129 ATATTTTTTATTAAAATAGATTATAATTAAATATCTGTCTCA

                       *          *      *                           *       
       3494 AGAAACGTGAACAAAAAGATATTCATTGGCAAGAAAAGTCCATTTATGGTAACCCATACCTTCGA
          1 AGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTAT-GTAACCCATGCCTTCGA

              *                         **********           *    *          
       3559 AAGCCTTATTACTCGCTTTAAATATTTTNNNNNNNNNNCAATTGATTTTGATTTGAATTTTTTTA
         65 AAACCTTATTACTCGCTTTAAATATTTTTATAAACTCACAATTGATTTTAATTTCAATTTTTTTA

                       *    *              * *     **
       3624 TATTTTTTATTGAAATTGATTATAATTAAATGTTTGTCTTG
        130 TATTTTTTATTAAAATAGATTATAATTAAATATCTGTCTCA

                                        *                      *   *       * 
       3665 AGAAACGTGAAGAAAAAGATATCCATTGATAAGAAAAGTCCATTAGTAT-TCACCTATGCCTTTG
          1 AGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATT--TATGTAACCCATGCCTTCG

                           *        *     
       3729 AAAACCTTATTACTCACTTTAAATGTTTTT
         64 AAAACCTTATTACTCGCTTTAAATATTTTT

       3759 GTAATCTCGN


Statistics
Matches: 219,  Mismatches: 43, Indels: 6
        0.82            0.16        0.02

Matches are distributed among these distances:
 171  215  0.98
 172    1  0.00
 173    3  0.01

ACGTcount: A:0.34, C:0.12, G:0.12, T:0.39


Consensus pattern (170 bp):   
AGAAACGTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATGTAACCCATGCCTTCGAA
AACCTTATTACTCGCTTTAAATATTTTTATAAACTCACAATTGATTTTAATTTCAATTTTTTTAT
ATTTTTTATTAAAATAGATTATAATTAAATATCTGTCTCA
Done.