genome.fa.s1906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399159.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2432.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6623

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388--720	172	1.9	170	82	3	409	40	12	13	33	1.82
1064--1823	170	4.5	170	80	4	744	35	13	15	34	1.87
1672--1971	148	2.0	148	83	3	381	39	14	13	34	1.84
1332--2241	489	1.9	488	83	5	1185	38	13	12	34	1.83
1820--3568	171	10.2	170	77	6	1554	37	13	13	35	1.84
1329--3569	512	4.4	492	76	10	1760	37	13	13	34	1.84
1820--3569	341	5.1	338	77	8	1625	37	13	13	35	1.84
3815--5712	171	11.1	168	76	7	1056	37	13	13	35	1.84
3807--5712	342	5.6	339	78	5	1722	37	13	13	35	1.84
5407--6003	309	1.9	310	80	5	679	35	13	14	37	1.84
5064--6335	650	2.0	650	81	5	1496	35	13	13	36	1.84

Tables:   1

The End!