Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399167.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_244.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10907
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.29
Warning! 2553 characters in sequence are not A, C, G, or T
Found at i:3006 original size:171 final size:169
Alignment explanation
Indices: 2829--3847 Score: 614
Period size: 171 Copynumber: 6.0 Consensus size: 169
2819 NNNNNNNNNN
* * * * *
2829 TTTTAAGTTGAATTTTTTTATATTTTTTATTACAATAGACTATAATTGAATGTTTACATCGAGAA
1 TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGA-TATAATTGAATATTTACCTCGAGAA
* *
2894 ACATGAAGAAAAATGCATTCATTGTCTAAAAAAGTCCATATATAGTCACCCATTCCTTCAAAAGC
65 ACATGAAGAAAAAGGCATTCATTGTC-AAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGC
********** * *
2959 CTTATTANNNNNNNNNNATTATTTTATAATCTCAAAATTGA
129 CTTATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
* * * * * **
3000 TTTTAAGTTCAATTTTTTTTTACATTGTTGGTTAAAACATATTATAATTGAATATTTACCTTAAG
1 TTTTAAGTTGAA--TTTTTTTACATTTTTTGTTAAAATAGA-TATAATTGAATATTTACCTCGAG
* * * * * *
3065 AAACATGAAGAAAAAGGAATTCACTGTAAAAAAAGTTCATTTATAGTTACCCATTCTTTCAAAAG
63 AAACATGAAGAAAAAGGCATTCATTGTCAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAG
* *
3130 CCATATTACTCGGTTTAAATAATTTTATAAACTCACAATTGA
128 CCTTATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
* *
3172 TTTTAAGTTG-ATTATATTTACATTTCTTGTTAAAATAGATAATAATTGAATATTTACCTCGA-A
1 TTTTAAGTTGAATT-TTTTTACATTTTTTGTTAAAATAGAT-ATAATTGAATATTTACCTCGAGA
* * * *
3235 GAACGTGAAGAAAAAGGCATTCATTGGCAAGAAAGCTCCATTTATAGTCACCCATTTCTTCAAAA
64 -AACATGAAGAAAAAGGCATTCATTGTCAAAAAAG-TCCATTTATAGTCACCCATTCCTTCAAAA
** * *************
3300 GCCTTATTACTCACTTTAAATAGTTNNNNNNNNNNNNNATTGA
127 GCCTTATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
* * * * *
3343 TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAACATACTATAATTGACTATTTATCTCAAGAA
1 TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGA-TATAATTGAATATTTACCTCGAGAA
* * ** * ** * *
3408 ACCTGAAGAAAAAGACATTCATTGGGAAGGAAAGTAAATTTATAGTCGCCCATTCCTT-AAAACA
65 ACATGAAGAAAAAGGCATTCATTGTCAA-AAAAGTCCATTTATAGTCACCCATTCCTTCAAAA-G
* * * * *
3472 CCTTATTACTCGCTTAAAATAGTTTTATAATCTCAAAATTAA
128 CCTTATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
* ** * * *** *
3514 TTTTAAGTAG-ATTTTTTT-CTATTTTTCATTAAAACAGACAATAATTGAATGCCTACCTTGAGA
1 TTTTAAGTTGAATTTTTTTAC-ATTTTTTGTTAAAATAGA-TATAATTGAATATTTACCTCGAGA
* * ********* * **
3577 AACGTGAAGAAAAAGACATTCNNNNNNNNNNAAAGTCTATTTATAGTCACCCATTGTTTCAAAAG
64 AACATGAAGAAAAAGGCATTC-ATTGTCAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAG
* * ** ** * ** * *
3642 CTTTGTTACTCACTTTAAATTGTTTTCTAATTTCATAATTAA
128 CCTTATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
* ** * * *** * *
3684 TTTTAAGGTGAATTTTTTTACATTTTTCATTAAACTAGAAAATAATTGAATGCCTGCCT-TAGAA
1 TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAG-ATATAATTGAATATTTACCTCGAG-A
** * * ** * * *
3748 AACCTAT-AA-AAAAAGTAATTCATTGGCAAGAAAAGTCTATTTATAGTGTCTCATTCTTTTAAA
64 AA-C-ATGAAGAAAAAGGCATTCATTGTCAA-AAAAGTCCATTTATAGTCACCCATTCCTTCAAA
* ** *
3811 AGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCA
126 AGCCTTATTACTCGGTTTAAATAATTTTATAAACTCA
3848 TACTTAATTT
Statistics
Matches: 660, Mismatches: 167, Indels: 42
0.76 0.19 0.05
Matches are distributed among these distances:
169 5 0.01
170 197 0.30
171 309 0.47
172 85 0.13
173 64 0.10
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.37
Consensus pattern (169 bp):
TTTTAAGTTGAATTTTTTTACATTTTTTGTTAAAATAGATATAATTGAATATTTACCTCGAGAAA
CATGAAGAAAAAGGCATTCATTGTCAAAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGCCT
TATTACTCGGTTTAAATAATTTTATAAACTCAAAATTGA
Found at i:3621 original size:341 final size:329
Alignment explanation
Indices: 2995--3661 Score: 650
Period size: 341 Copynumber: 2.0 Consensus size: 329
2985 TAATCTCAAA
*
2995 ATTGATTTTAAGTTCAATTTTTTTTTACATTGTTGGTTAAAACATATTATAATTGAATATTTACC
1 ATTGATTTTAAGTTCAA-TTTTTTTTACATTGTTGGTTAAAACATACTATAATTGAATATTTACC
* * ** * *
3060 TTAAGAAACATGAAGAAAAAGGAATTCACTGTAAAAAAAGTTCATTTATAGTTACCCATTCTTTC
65 TCAAGAAACATGAAGAAAAAGGAATTCACTGGAAAAAAAGTAAATTTATAGTCACCCATTCCTTC
* * * * * *
3125 AAAAGCCATATTACTCGGTTTAAATAATTTTATAAACTCACAATTGATTTTAAGTTGATTATATT
130 AAAAACCATATTACTCGCTTAAAATAATTTTATAAACTCAAAATTAATTTTAAGTAGATTATATT
* * * ** *
3190 TACATTTCTTGTTAAAATAGATAATAATTGAATATTTACCTCGAAGAACGTGAAGAAAAAGGCAT
195 TACATTTCTTATTAAAACAGACAATAATTGAATACCTACCTCGAAGAACGTGAAGAAAAAGACAT
3255 TCATTGGCAAGAAAGCTCCATTTATAGTCACCCATT-TCTTCAAAAGCCTTATTACTCACTTTAA
260 TCATTGGCAAGAAAGCTCCATTTATAGTCACCCATTGT-TTCAAAAGCCTTATTACTCACTTTAA
3319 ATAGTT
324 ATAGTT
* * *
3325 NNNNNNNNNNNNNATTGATTTTAAGTTGAA-TTTTTTTACATTTTTTGTTAAAACATACTATAAT
1 -------------ATTGATTTTAAGTTCAATTTTTTTTACATTGTTGGTTAAAACATACTATAAT
* * * * **
3389 TGACTATTTATCTCAAGAAACCTGAAGAAAAA-GACATTCATTGGGAAGGAAAGTAAATTTATAG
53 TGAATATTTACCTCAAGAAACATGAAGAAAAAGGA-ATTCACT-GGAAAAAAAGTAAATTTATAG
* * * *
3453 TCGCCCATTCCTT-AAAACACCTTATTACTCGCTTAAAATAGTTTTATAATCTCAAAATTAATTT
116 TCACCCATTCCTTCAAAA-ACCATATTACTCGCTTAAAATAATTTTATAAACTCAAAATTAATTT
* * *
3517 TAAGTAGATT-T-TTTTCTATTT-TTCATTAAAACAGACAATAATTGAATGCCTACCTTG-AGAA
180 TAAGTAGATTATATTTAC-ATTTCTT-ATTAAAACAGACAATAATTGAATACCTACCTCGAAG-A
********* *
3578 ACGTGAAGAAAAAGACATTCNNNNNNNNNNAAAG-TCTATTTATAGTCACCCATTGTTTCAAAAG
242 ACGTGAAGAAAAAGACATTC-ATTGGCAAGAAAGCTCCATTTATAGTCACCCATTGTTTCAAAAG
* *
3642 CTTTGTTACTCACTTTAAAT
306 CCTTATTACTCACTTTAAAT
3662 TGTTTTCTAA
Statistics
Matches: 269, Mismatches: 47, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
340 10 0.04
341 165 0.61
342 78 0.29
343 16 0.06
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.36
Consensus pattern (329 bp):
ATTGATTTTAAGTTCAATTTTTTTTACATTGTTGGTTAAAACATACTATAATTGAATATTTACCT
CAAGAAACATGAAGAAAAAGGAATTCACTGGAAAAAAAGTAAATTTATAGTCACCCATTCCTTCA
AAAACCATATTACTCGCTTAAAATAATTTTATAAACTCAAAATTAATTTTAAGTAGATTATATTT
ACATTTCTTATTAAAACAGACAATAATTGAATACCTACCTCGAAGAACGTGAAGAAAAAGACATT
CATTGGCAAGAAAGCTCCATTTATAGTCACCCATTGTTTCAAAAGCCTTATTACTCACTTTAAAT
AGTT
Found at i:5149 original size:170 final size:170
Alignment explanation
Indices: 4610--5155 Score: 413
Period size: 170 Copynumber: 3.2 Consensus size: 170
4600 NNNNNNNNNN
* * * *
4610 TCATAATTGATTTTAACTTGAATTTTTTTGTACATT-TTTACTTAAAACAGACTATAATTGAATG
1 TCATAATTGATTTT-AGTTGAA-TTTTTT-TACATTATTCA-TTAAAACAGACAATAATTAAATG
* * * * * * * * *
4674 TTTACCTCGAGAAACATGCAA-AAAAAGGCATGCATTGGCAAAACAAGTCCATTTA-TAGTCATC
62 TCTACCTCAAGAAACATG-AACAAGAAGGCATTCATTGACAAAAAAAGTCTATTTACTA-ACACC
* * **********
4737 CATTCCTTCAAAAACCTTATTATTCGNNNNNNNNNNTTTTATAATC
125 CATTCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC
** *
4783 TCATAATTGATTTTAGTTG-ATTATTTTTGTATTTTTCATTAAAACAGACAATAATTAAATGTCT
1 TCATAATTGATTTTAGTTGAATT-TTTTTACATTATTCATTAAAACAGACAATAATTAAATGTCT
** * * * *
4847 ATGTCAAGAAACATGAAGAAGAAGGCATTTATTGACAAAAAAAGTTTATTTACTATCACCCATTC
65 ACCTCAAGAAACATGAACAAGAAGGCATTCATTGACAAAAAAAGTCTATTTACTAACACCCATTC
* *
4912 CTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTAAAATT
130 CTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC
* * ** * * ** *
4953 TCAAAATTGATTTTAGTTTCAATTTTTTTACATTATTGGTTAAAATATATTATAATTCAATGTCT
1 TCATAATTGATTTTAG-TTGAATTTTTTTACATTATTCATTAAAACAGACAATAATTAAATGTCT
* *
5018 ACCTTAAGAAACATGAAC-AGAAAGGCATTCA-TGGCAAAAAAAGTCTATTTA-TAGACACCCAT
65 ACCTCAAGAAACATGAACAAG-AAGGCATTCATTGACAAAAAAAGTCTATTTACTA-ACACCCAT
* **********
5080 TCTTTCAAAAGCCTTATTACNNNNNNNNNNTGGTTTTATAATC
128 TCCTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC
*
5123 TCATAATTAATTTTAAGTTGAATTTTTTTACAT
1 TCATAATTGATTTT-AGTTGAATTTTTTTACAT
5156 GCTTGGCTTG
Statistics
Matches: 296, Mismatches: 68, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
169 4 0.01
170 203 0.69
171 68 0.23
172 7 0.02
173 14 0.05
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.38
Consensus pattern (170 bp):
TCATAATTGATTTTAGTTGAATTTTTTTACATTATTCATTAAAACAGACAATAATTAAATGTCTA
CCTCAAGAAACATGAACAAGAAGGCATTCATTGACAAAAAAAGTCTATTTACTAACACCCATTCC
TTCAAAAGCCTTATTACTCGCTTTAAATGGTTTTATAATC
Found at i:7493 original size:171 final size:170
Alignment explanation
Indices: 7226--7581 Score: 412
Period size: 171 Copynumber: 2.1 Consensus size: 170
7216 NNNNNNNTTG
* * * * *
7226 TGAGATTATAAAACCATTTAAACCGAGTAATAAAGCTTTTGAAAGAATGGGTAATTATAAATGGA
1 TGAGATTATAAAACCAATTAAACCAAGTAATAAAGCTTTTGAAAGAATAGGTAACTATAAATAGA
* * * *
7291 CTTTTTTTACAGTGAATTCTTTTTTCTTCATGTTTCTTAAGGTAAACATTTAATTATAATATGTT
66 CTTTTTTTACAATGAATTCATTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATATGTT
* * * * * *
7356 TTAACCAACAATGTAAAAAAACTTGAACTTAAAATCAATTT
131 GTAACAAAAAATATAAAAAAA-TTCAACTTAAAATCAATTA
* * * * * *
7397 TGAGATTATAAAA-TAATTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGGTGACTATATATAGA
1 TGAGATTATAAAACCAATTAAACCAAGTAATAAAGCTTTTGAAAGAATAGGTAACTATAAATAGA
* * * * *
7461 -TTTTTTTGGACAATGAATGT-ATTTTTCTTCATGTTTCTCGATGTAGACATTCAATTATAGTCT
66 CTTTTTTT--ACAATGAAT-TCATTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATAT
7524 GTTGTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTA
128 GTTGTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTA
*
7567 TGAGGTTATAAAACC
1 TGAGATTATAAAACC
7582 NNNNNNNNNN
Statistics
Matches: 153, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
169 7 0.05
170 69 0.45
171 76 0.50
172 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (170 bp):
TGAGATTATAAAACCAATTAAACCAAGTAATAAAGCTTTTGAAAGAATAGGTAACTATAAATAGA
CTTTTTTTACAATGAATTCATTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTATAATATGTT
GTAACAAAAAATATAAAAAAATTCAACTTAAAATCAATTA
Found at i:8413 original size:171 final size:172
Alignment explanation
Indices: 8228--8598 Score: 419
Period size: 171 Copynumber: 2.2 Consensus size: 172
8218 NNNNNNNNNN
* * * * *
8228 AATTTTGAGATTATAAAACTATTTAAAGGGAGTAGTAAGGCTTTTGAAGGAATGATTGACTATAA
1 AATTTTGAGATTATAAAACTATTTAAAGCGAGTAATAAGGATTTTGAAAGAATGAGTGACTATAA
* ** * ** * *
8293 ATGGACTTTTTTTGCCAATGAATATC-TTTTTCTTCACGTTTCTTTAGATAGACATTCAATTGTA
66 AAGGACTTTTCATGCCAATGAA-AGCTTTTTTCTTCACGTTTCTCAAGATAAACATTCAATTATA
** * * * *
8357 GTATGTTTTAACCAGAAATGT-AAAACAAG-TCAACTTAAAATC
130 ACATGTGTTAACAAAAAATGTCAAAA-AAGTTCAACTGAAAATC
* *
8399 AGTTATTG-GATTATAAAAC-ACTTTAAAGCGAGTAATAATGATTTTGAAAGAATGAGTGACTAT
1 AATT-TTGAGATTATAAAACTA-TTTAAAGCGAGTAATAAGGATTTTGAAAGAATGAGTGACTAT
* * * *
8462 AAAAGGACTTTTCATGCTAGTGAAAGCTTTTTTCTTCATGTTTCTCAAGGTAAACATTCAATTAT
64 AAAAGGACTTTTCATGCCAATGAAAGCTTTTTTCTTCACGTTTCTCAAGATAAACATTCAATTAT
* *
8527 AACATGTGTTAACAAAAAATGTCAAAAAAGTTGAACTGAAAATT
129 AACATGTGTTAACAAAAAATGTCAAAAAAGTTCAACTGAAAATC
*
8571 AATTTTGACATTATAAAACTATTTAAAG
1 AATTTTGAGATTATAAAACTATTTAAAG
8599 TGTTAACAAT
Statistics
Matches: 164, Mismatches: 29, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
170 3 0.02
171 123 0.75
172 37 0.23
173 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (172 bp):
AATTTTGAGATTATAAAACTATTTAAAGCGAGTAATAAGGATTTTGAAAGAATGAGTGACTATAA
AAGGACTTTTCATGCCAATGAAAGCTTTTTTCTTCACGTTTCTCAAGATAAACATTCAATTATAA
CATGTGTTAACAAAAAATGTCAAAAAAGTTCAACTGAAAATC
Found at i:8937 original size:171 final size:168
Alignment explanation
Indices: 8616--10907 Score: 1148
Period size: 171 Copynumber: 13.4 Consensus size: 168
8606 AATTAATTTT
* * ** * *
8616 GACTGTTTTTACCAATGAATGCCTTTTTCTTCACGTTTGTCAAGGTCGATAATCAATTATAGTCT
1 GACT-TTTTTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
* * * * *
8681 GTTTTCACCAAAAATGTAGAACAATTCAAATTAAAATCAATTATGAGATTAT-AAATCTATTTGA
65 GTTTTAACCAAAAATGTA-AAAAAATCAACTTAAAATCAATTATGAGATTATAAAATC-ATTTAA
* **
8745 AGTGAATAATAAGATTTTTGAAAGAATGGGAGACTATAAATG
128 AGTGAGTAATAAGCCTTTTGAAAGAATGGGA-ACTATAAATG
* * * *
8787 GACTTTTCTTACCAATGACTGCTTTTTTCTTTACGTTTCTCAAGATAAACATTTAATTATAGTCT
1 GACTTTT-TTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
* * * * *
8852 GTTTTAGCAAAAAATGTAAAAATAATCAATTTAAAATTAATTATGAGATTATAAAATCATTGAAA
65 GTTTTAACCAAAAATGTAAAAA-AATCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAA
* * *
8917 GAGAGTAACAAGCCTTTTGAAAGAATGGGTAACTAT-AATCT
129 GTGAGTAATAAGCCTTTTGAAAGAATGGG-AACTATAAAT-G
* *** * * * *
8958 GACTTTTCTTGCTGGTGAATGCCTTTTTCTTTACATTTCTCAAGGTAAACATTCAATTATACTCT
1 GACTTTT-TTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
* * * * * ********** *
9023 GTTTTAACAAAAAATATAAAGAAATTGAACTTAAAATCAATTTTNNNNNNNNNNAACCATTTAAA
65 GTTTTAACCAAAAATGTAAA-AAAATCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAA
* *
9088 GTGAGTAATAAGGCC-TTTGAAGGAATGGGCAACTATAAATA
129 GTGAGTAATAA-GCCTTTTGAAAGAATGGG-AACTATAAATG
** ********** * * * *
9129 GACTTTTTTTGTCAANNNNNNNNNNTTTCTTCACGTTTCTAAAGGTAGAGAATCAATTATAGTCT
1 GAC-TTTTTTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
* * *********
9194 GTTTTAACCAGAAATGTAAAAGAACTCAACTTAAAATCAATTATGAGNNNNNNNNNNT-ATTTAA
65 GTTTTAACCAAAAATGTAAAA-AAATCAACTTAAAATCAATTATGAG-ATTATAAAATCATTTAA
* *
9258 AGTGAGTAATAAGGCTTTTGAAAGAATGGTAACTATAAATG
128 AGTGAGTAATAAGCCTTTTGAAAGAATGGGAACTATAAATG
* * * ** *
9299 GACTTTTTTACCAATGAGTG-TCTTTTTCTTTATGTTTC-CTAAGACAGACATTCAATTATAG-C
1 GACTTTTTTACCAATGAATGCT-TTTTTCTTCACGTTTCTC-AAGGTAAACATTCAATTATAGTC
* * * * *
9361 TTGTTTTAACCAAAAATGTAAAACAATTGAACTTAAAATCAATTATGACATTAGAAAACCATTTA
64 -TGTTTTAACCAAAAATGTAAAA-AAATCAACTTAAAATCAATTATGAGATTATAAAATCATTTA
** * ** * * *
9426 AAACGAGTAATAAGGCTTGCGAAGGAATGAGTG-ACTACAAATA
127 AAGTGAGTAATAAGCCTTTTGAAAGAATG-G-GAACTATAAATG
** * * * * *
9469 GACTTATTTTACCAATGAATTTATTTTTTTTTTTACGTTTTTCGAGGTAAACATTCAATTATAGC
1 GACTT-TTTTACCAATGAA--TGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGT
* * **
9534 CTGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAATCAATTATGAGATTCGAAAA-CTATTT
63 CTGTTTTAACCAAAAATGTAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAAATC-ATTT
* * * * *
9598 AAAGTGAGTAATAAGGCTTTTGAAGGAAT-AGATGATTTTAAATG
126 AAAGTGAGTAATAAGCCTTTTGAAAGAATGGGA--ACTATAAATG
* *
9642 GACTTTTTTACCAATGAATG-TGTTTTT-TTCACGTTTCTCGAGGTAAACA-ACTAATTATTA-T
1 GACTTTTTTACCAATGAATGCT-TTTTTCTTCACGTTTCTCAAGGTAAACATTC-AATTA-TAGT
* ** * * * * * *
9703 CTATTTTAATGAAAAATTTAAAAATAATCAATTTAAAATTAATTATGAGACTATAAAA-CCTTTT
63 CTGTTTTAACCAAAAATGTAAAAA-AATCAACTTAAAATCAATTATGAGATTATAAAATCATTTA
* *
9767 AGGACGAGTAATAAGCCTTTTG-AAGAAATGGGTAACTATAAATG
127 AAG-TGAGTAATAAGCCTTTTGAAAG-AATGGG-AACTATAAATG
** * * * * * *
9811 GACTTTTCTTGTCAGTGCATGCCTTTTTCTTCACGTTTCTTAAGGTAAACATTCAATTATAATCN
1 GACTTTT-TTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
********* * * * * * * * * *
9876 NNNNNNNNNAAAAATATAAAGAAATTGAAATTAAAATCAATTTTGGGATTATGAAACCATTCAAA
65 GTTTTAACCAAAAATGTAAA-AAAATCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAA
* * * *
9941 GTAACTAATAAGGCTTTTGAAGGAATGAGTG-ACTATAAATG
129 GTGAGTAATAAGCCTTTTGAAAGAATG-G-GAACTATAAATG
*** * * * * * * ***
9982 GACTTTTTTTTGTGAATAAATACATTTTTCTTCACATTTCTCAAGGTAGAGATTCAATTATAANN
1 GAC--TTTTTTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTC
******** * * * * * *
10047 NNNNNNNNCCAAAAATATAAAAAAATTCAACTTAAAATCAATTTTGTGATTATAAAACCGTTTAC
64 TGTTTTAACCAAAAATGTAAAAAAA-TCAACTTAAAATCAATTATGAGATTATAAAATCATTTAA
* *
10112 A-TGGAGTAATAAGGCTTTTG-AAGAAATGGACAACTATAAATG
128 AGT-GAGTAATAAGCCTTTTGAAAG-AATGG-GAACTATAAATG
* * * ** * * * * **
10154 AACTTTTTTTCTAAATGAATGCCTTTTTT-TTCATATTTTTCGAGGCAGACATTCAATTATAGAG
1 GACTTTTTTAC-CAATGAATG-CTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTC
* * * * * *
10218 TGTTTTGACCAAAATTGTAATACAATTCAACTTAAAATCAAATATTAGATTATAAAA-CTATTTA
64 TGTTTTAACCAAAAATGTAA-AAAAATCAACTTAAAATCAATTATGAGATTATAAAATC-ATTT-
* *
10282 AAAG-GAGTAATAAGGCTTTTGAAAGAATGAGAGACTATAAATG
126 AAAGTGAGTAATAAGCCTTTTGAAAGAATGGGA-ACTATAAATG
* * *
10325 GATTTTTTTTACCAATGAATG-TCTTGTTCTTCACGTTTCTCGAGGTAAACATTCAATTATTA-T
1 GA-CTTTTTTACCAATGAATGCT-TTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTA-TAGT
* * * * ********** *
10388 CTTTTTTTACCAAAAATGTAAAACAATTCAACTTAAAATTANNNNNNNNNNTATAAAACCATTTA
63 CTGTTTTAACCAAAAATGTAAAA-AAATCAACTTAAAATCAATTATGAGATTATAAAATCATTTA
* * * *** *
10453 AAGCGAGCAATAAAG-CTTTTG-ATGAAATGATTTACTATAAATA
127 AAGTGAGTAAT-AAGCCTTTTGAAAG-AATG-GGAACTATAAATG
* * ** * *
10496 GACTTTTCTT-CTCAATCAATTGC-TTTTTCTGT-ATGTTTCTTGAGGTAGACATTCAATTATTG
1 GACTTTT-TTAC-CAATGAA-TGCTTTTTTCT-TCACGTTTCTCAAGGTAAACATTCAATTATAG
** * * * * * * *
10558 TCTGTTTTAATGAACAATGTAAGAATAATCAACTT-GAATGAAATTATTAGATTATTAAACCATT
62 TCTGTTTTAACCAAAAATGTAA-AAAAATCAACTTAAAAT-CAATTATGAGATTATAAAATCATT
*
10622 TAAAGTGAGTAATAAGCCTTTTGAAAGAATAGGTG-ACTATAAACG
125 TAAAGTGAGTAATAAGCCTTTTGAAAGAAT-GG-GAACTATAAATG
* * * * ** * *
10667 CACTTTTCTTGCCAGTGAATGCCTTTGGCTTAACGTTTCTCAAGGTAAACATTCAATTATTA-CC
1 GACTTTT-TTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTA-TAGTC
* * * * ****
10731 TGTTTTAGA--AAAAATATAAAGAAATTGAACTTAAAATCAATTTTGAGATTATAAAA-CNNNNN
64 TGTTTTA-ACCAAAAATGTAAA-AAAATCAACTTAAAATCAATTATGAGATTATAAAATC-ATTT
***** * *
10793 NNNNNGAGTAATAAGGCTTTTG-AAGAAATAGGTG-ACTATAAATA
126 AAAGTGAGTAATAAGCCTTTTGAAAG-AAT-GG-GAACTATAAATG
* ** * * * * *
10837 GAGTTTTTTGGTCAATGAATGCCTTTTTCTTCATGTTTCTTACGGTAGACATTCAATTATAGTCT
1 GACTTTTTT-ACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCT
10902 GTTTTA
65 GTTTTA
Statistics
Matches: 1633, Mismatches: 394, Indels: 189
0.74 0.18 0.09
Matches are distributed among these distances:
168 9 0.01
169 226 0.14
170 218 0.13
171 835 0.51
172 217 0.13
173 125 0.08
174 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.35
Consensus pattern (168 bp):
GACTTTTTTACCAATGAATGCTTTTTTCTTCACGTTTCTCAAGGTAAACATTCAATTATAGTCTG
TTTTAACCAAAAATGTAAAAAAATCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGT
GAGTAATAAGCCTTTTGAAAGAATGGGAACTATAAATG
Done.