Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399172.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2445.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2785
ACGTcount: A:0.20, C:0.06, G:0.07, T:0.18

Warning! 1364 characters in sequence are not A, C, G, or T


Found at i:2750 original size:172 final size:172

Alignment explanation


    Indices: 2459--2784  Score: 413
    Period size: 172  Copynumber: 1.9  Consensus size: 172

       2449 CCAAGCTAGG

                        * *                        *               *     *   
       2459 CATTCAATTATAGTGTGTTTTAATCAAAAATGTAAAAAAGATTAAACTTAAAATTTATTATGAGA
          1 CATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAAATTAAACTTAAAATTAATTATAAGA

               *                         *     *   *  *                *   * 
       2524 TTATAAAACCATTTAAAAAGAGTAATAAGGCTCTTGAAAGAATGAAAAACTATAAATGGTCTTTT
         66 TTAAAAAACCATTTAAAAAGAGTAATAAGCCTCTTAAAAAAAAGAAAAACTATAAATGGACTTGT

                           *                          
       2589 CTTGCCAATGAATGCTTTTTTCTTCACATTTCTTTGGGAAGA
        131 CTTGCCAATGAATGCGTTTTTCTTCACATTTCTTTGGGAAGA

                                                        *                    
       2631 CATTCAATTATAATCTGTTTTAAT-AATAAATGTAAAAAAAATTTAACTTAAAATTAATTATAAG
          1 CATTCAATTATAATCTGTTTTAATCAA-AAATGTAAAAAAAATTAAACTTAAAATTAATTATAAG

            *                 **     *       *             * *               
       2695 CTTAAAAAACCATTTAAAGCGAGTACTAAGCCTTTTAAAAAAACAG-GAGACTATAAATGGACTT
         65 ATTAAAAAACCATTTAAAAAGAGTAATAAGCCTCTTAAAAAAA-AGAAAAACTATAAATGGACTT

                 *   *                
       2759 GTCTTTCCATTGAATGCGTTTTTCTT
        129 GTCTTGCCAATGAATGCGTTTTTCTT

       2785 T


Statistics
Matches: 129,  Mismatches: 23, Indels: 4
        0.83            0.15        0.03

Matches are distributed among these distances:
 171    2  0.02
 172  126  0.98
 173    1  0.01

ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36


Consensus pattern (172 bp):   
CATTCAATTATAATCTGTTTTAATCAAAAATGTAAAAAAAATTAAACTTAAAATTAATTATAAGA
TTAAAAAACCATTTAAAAAGAGTAATAAGCCTCTTAAAAAAAAGAAAAACTATAAATGGACTTGT
CTTGCCAATGAATGCGTTTTTCTTCACATTTCTTTGGGAAGA
Done.