Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399181.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2451.2, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4146
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.31

Warning! 844 characters in sequence are not A, C, G, or T


Found at i:902 original size:171 final size:170

Alignment explanation


    Indices: 562--1008  Score: 533
    Period size: 171  Copynumber: 2.6  Consensus size: 170

        552 ACTCAAGCCT

                                              *             *                
        562 TCAAAAGCCTTATTACTTGCTTTAAATGGTTTTACAATCTCCA-AATTAATTTTAAGTTGAATTT
          1 TCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCT-CATAATTGATTTTAAGTTGAATTT

                  *       *      *     *          *                          
        626 TTTATACATTTTTGGTTAAAATAGACTTTAATTGAATGTCTACCTTGAGAAACGTGAAGAAAAAA
         65 TTT-TATATTTTT-ATTAAAACAGACTATAATTGAATGCCTACCTTGAGAAACGTGAAGAAAAAA

                       *                               
        691 GCATTCATTGGGAGAAAAAGTAAATTTATAGTCACTCATTCCA
        128 GCATTCATTGGAAGAAAAAGTAAATTTATAGTCACTCATTCCA

                   *         *   *                     *          *          
        734 TCAAAAGTCTTATTACTCGCTCTAAATGGTTTTATAATCTCATTATTGATTTTAGGTTGAATTTT
          1 TCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT

                 *                   *     *                                 
        799 TTTATGTTTTTCATTAAAACAGACTGTAATTAAATGCCTACCTTGAGAAACGT-ATAG-AAAAAG
         66 TTTATATTTTT-ATTAAAACAGACTATAATTGAATGCCTACCTTGAGAAACGTGA-AGAAAAAAG

                              *   **          *        *
        862 CCATTCATTGAGAAGAAATA-TCTATTTATAGTCTCTCATTCCT
        129 -CATTCATTG-GAAGAAAAAGTAAATTTATAGTCACTCATTCCA

             *                        *              * *           *    *   *
        905 TTAAAAGCCTTATTACTTGCTTTAAAAGGTTTTATAATCTCGTCATTGATTTTAAATTGACTTTG
          1 TCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT

                                   *               
        970 TTTATATTTTTAGTTAAAACAGATTATAATTGAATGCCT
         66 TTTATATTTTTA-TTAAAACAGACTATAATTGAATGCCT

       1009 CTTCGAGAAA


Statistics
Matches: 234,  Mismatches: 36, Indels: 11
        0.83            0.13        0.04

Matches are distributed among these distances:
 170    8  0.03
 171  162  0.69
 172   64  0.27

ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40


Consensus pattern (170 bp):   
TCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAATTTT
TTTATATTTTTATTAAAACAGACTATAATTGAATGCCTACCTTGAGAAACGTGAAGAAAAAAGCA
TTCATTGGAAGAAAAAGTAAATTTATAGTCACTCATTCCA
Done.