Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399192.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2461.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.28

Warning! 522 characters in sequence are not A, C, G, or T


Found at i:60 original size:18 final size:20

Alignment explanation


    Indices: 37--77  Score: 68
    Period size: 18  Copynumber: 2.1  Consensus size: 20

         27 ATTTAAGTTA

                                
         37 TTTATTTATA-TTA-TTATT
          1 TTTATTTATATTTATTTATT

                                
         55 TTTATTTATATTTATTTATT
          1 TTTATTTATATTTATTTATT

               
         75 TTT
          1 TTT

         78 TTCAATTCTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  18   10  0.48
  19    3  0.14
  20    8  0.38

ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76


Consensus pattern (20 bp):   
TTTATTTATATTTATTTATT
Done.