Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399193.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2462.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2905
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.26

Warning! 944 characters in sequence are not A, C, G, or T


Found at i:1596 original size:170 final size:170

Alignment explanation


    Indices: 1292--1632  Score: 378
    Period size: 170  Copynumber: 2.0  Consensus size: 170

       1282 NNNNNNNNNN

                      *              *   *   *              *    *      *    
       1292 AATCTCATAATTGATTTTAAGTTGACTTTTTTAGATTTTTTATTAAAATAGACTATAATTGAATG
          1 AATCTCATAACTGATTTTAAGTTGAATTTCTTACATTTTTTATTAAAACAGACAATAATTAAATG

                               **                 *           **********     
       1357 CTTGCCTCAAGAAACATATGGAAAAACCTATTTATTTGGAAGAAAAGTCCNNNNNNNNNNTCCCA
         66 CTTGCCTCAAGAAACATATAAAAAAACCTATTTATTTGAAAGAAAAGTCCATTTATAGTCTCCCA

                       *           *                 
       1422 TTCCTTCAAAAGCCTTATTACTCGCTCTAAAT-GATTTTAT
        131 TTCCTTCAAAAACCTTATTACTCACTCTAAATAG-TTTTAT

                     *                               *        *              
       1462 AATCTCATAGCTGATTTTAAGTTGAATTTCTTACATTTTTTGTTAAAACATACAATAATTAAATG
          1 AATCTCATAACTGATTTTAAGTTGAATTTCTTACATTTTTTATTAAAACAGACAATAATTAAATG

                    *      *           *                    *             *  
       1527 CTTGCCTCGAGAAACCTATAAAAAAACTTATTTATTTGAAAGAAAAGTGCATTTATAGTCTCTCA
         66 CTTGCCTCAAGAAACATATAAAAAAACCTATTTATTTGAAAGAAAAGTCCATTTATAGTCTCCCA

                  *                   *             
       1592 TTCCTTTAAAAACCTTATTACTCACTTTAAATAGTTTTAT
        131 TTCCTTCAAAAACCTTATTACTCACTCTAAATAGTTTTAT

             
       1632 A
          1 A

       1633 TNNNNNNNNN


Statistics
Matches: 138,  Mismatches: 32, Indels: 2
        0.80            0.19        0.01

Matches are distributed among these distances:
 170  137  0.99
 171    1  0.01

ACGTcount: A:0.35, C:0.15, G:0.10, T:0.38


Consensus pattern (170 bp):   
AATCTCATAACTGATTTTAAGTTGAATTTCTTACATTTTTTATTAAAACAGACAATAATTAAATG
CTTGCCTCAAGAAACATATAAAAAAACCTATTTATTTGAAAGAAAAGTCCATTTATAGTCTCCCA
TTCCTTCAAAAACCTTATTACTCACTCTAAATAGTTTTAT
Done.