Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399205.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2473.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2994
ACGTcount: A:0.21, C:0.07, G:0.08, T:0.20

Warning! 1337 characters in sequence are not A, C, G, or T


Found at i:2804 original size:170 final size:170

Alignment explanation


    Indices: 2510--2994  Score: 505
    Period size: 170  Copynumber: 2.8  Consensus size: 170

       2500 NNNNNNNNNN

                *                                       **     *  *  *  *   *
       2510 ACTAGAAATGGACTTTTCTT-TTCAATGAATGGCTTTTTCTATAGGTTTCTCGAAGTGGGTATTT
          1 ACTATAAATGGACTTTTCTTCTT-AATGAATGGCTTTTTCTATACATTTCTTGAGGTAGGCATTC

                     *                          *                            
       2574 AATTATTGTTTGTTTTAATAAAAAATATAAAAAATTGAACTTAAAATCAATGATGAGATTATAAA
         65 AATTATTGTCTGTTTTAATAAAAAATATAAAAAATTCAACTTAAAATCAATGATGAGATTATAAA

              *                  *                    
       2639 ACTATTTAAAGCGAGCAATGAGGCTTTTAAAGGAATAGG-TG
        130 ACCATTTAAAGCGAGCAATGAAGCTTTTAAAGGAAT-GGATG

                                                      *                      
       2680 A-TGATAAATGGACTTTTCTTCTTAATGAATGGCTTTTTCTACACATTTCTTGAGGTAGGCATTC
          1 ACT-ATAAATGGACTTTTCTTCTTAATGAATGGCTTTTTCTATACATTTCTTGAGGTAGGCATTC

                   *           *                        **********           
       2744 AATTATTATCTGTTTTAATGAAAAATATAAAAAATTCAACTTAANNNNNNNNNNGAGATTATAAA
         65 AATTATTGTCTGTTTTAATAAAAAATATAAAAAATTCAACTTAAAATCAATGATGAGATTATAAA

                           *            *            
       2809 ACCATTTAAAGCGAGTAATGAAGCTTTTGAAGGAATGGATG
        130 ACCATTTAAAGCGAGCAATGAAGCTTTTAAAGGAATGGATG

                    **             *        *        * *      *   *      *   
       2850 ACTATAAAAAGACTTTTCTTAC-CAATGAAT-ACTTTTT-TGTTCATGTTTTTCAAGGTAGACAT
          1 ACTATAAATGGACTTTTCTT-CTTAATGAATGGCTTTTTCTATACAT-TTCTT-GAGGTAGGCAT

                         *              *                         **         
       2912 TCAATTATTGTCTATTTTAATAAAAAATGTAAAAGAATTCAACTTAAAATCAATTCTGAGATTAT
         63 TCAATTATTGTCTGTTTTAATAAAAAATATAAAA-AATTCAACTTAAAATCAATGATGAGATTAT

                              
       2977 AAAACCATTTAAAGCGAG
        127 AAAACCATTTAAAGCGAG


Statistics
Matches: 256,  Mismatches: 51, Indels: 15
        0.80            0.16        0.05

Matches are distributed among these distances:
 168    4  0.02
 169   13  0.05
 170  197  0.77
 171   42  0.16

ACGTcount: A:0.37, C:0.10, G:0.15, T:0.36


Consensus pattern (170 bp):   
ACTATAAATGGACTTTTCTTCTTAATGAATGGCTTTTTCTATACATTTCTTGAGGTAGGCATTCA
ATTATTGTCTGTTTTAATAAAAAATATAAAAAATTCAACTTAAAATCAATGATGAGATTATAAAA
CCATTTAAAGCGAGCAATGAAGCTTTTAAAGGAATGGATG
Done.