Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399206.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2474.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6428
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.18

Warning! 3211 characters in sequence are not A, C, G, or T


Found at i:1807 original size:16 final size:16

Alignment explanation


    Indices: 1786--1816  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1776 TTTAACCAAT

                            
       1786 AATGTAAAAACAATTG
          1 AATGTAAAAACAATTG

                     *     
       1802 AATGTAAAATCAATT
          1 AATGTAAAAACAATT

       1817 TTGGGATTAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29


Consensus pattern (16 bp):   
AATGTAAAAACAATTG
Done.