Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399207.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2475.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3141
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.24

Warning! 1112 characters in sequence are not A, C, G, or T


Found at i:1367 original size:171 final size:171

Alignment explanation


    Indices: 1179--1586  Score: 473
    Period size: 171  Copynumber: 2.4  Consensus size: 171

       1169 NNNNNNNNTG

                                                        *                    
       1179 AATCTTTTTACATTTTTGATTAAAACAGATTAAAATTCAATGTCAACCTCAAGAAACATGATGAA
          1 AATCTTTTTACATTTTTGATTAAAACAGATTAAAATTCAATGTCTACCTCAAGAAACATGATGAA

                                   *       **     * ** *      *            * 
       1244 AAAG-TGAGTCATTGCCAAGAAATGTCCATTTGTAGTCGCTGATACCTT-TAGAAGCCTTATTGC
         66 AAAGCT-AGTCATTGCCAAGAAAAGTCCATTCATAGTCACCCACACCTTCCA-AAGCCTTATTAC

                  **           *                        
       1307 TAT-CTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGCCA
        129 T-TGCTGGAAATAGTTTTACAATCTCATAATTGATTTTAAGCCA

                       *       *             * *      *       ***       * *  
       1350 AAT-TATTTTATATTTTTGCTTAAAACAGATTATAGTTCAATATCTACCTTGGGAAACATCAAGA
          1 AATCT-TTTTACATTTTTGATTAAAACAGATTAAAATTCAATGTCTACCTCAAGAAACATGATGA

                    *      *                                        *        
       1414 AAAAGCTATTCATTGGCAAGAAAAGTCCATTCATAGTCACCCACACCTTCCAAAGCTTTATTACT
         65 AAAAGCTAGTCATTGCCAAGAAAAGTCCATTCATAGTCACCCACACCTTCCAAAGCCTTATTACT

                      *                            ** 
       1479 TGCTGGAAATGGTTTTACAATCTCATAATTGATTTTAAGTTA
        130 TGCTGGAAATAGTTTTACAATCTCATAATTGATTTTAAGCCA

                             *     *                                         
       1521 AATCTTTTTACATTTTTTATTAACACAGATTAAAATTCAATGTCTACCTCAAGAAACATGATGAA
          1 AATCTTTTTACATTTTTGATTAAAACAGATTAAAATTCAATGTCTACCTCAAGAAACATGATGAA

             
       1586 A
         66 A

       1587 NNNNNNNNNN


Statistics
Matches: 191,  Mismatches: 41, Indels: 10
        0.79            0.17        0.04

Matches are distributed among these distances:
 170    2  0.01
 171  186  0.97
 172    3  0.02

ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36


Consensus pattern (171 bp):   
AATCTTTTTACATTTTTGATTAAAACAGATTAAAATTCAATGTCTACCTCAAGAAACATGATGAA
AAAGCTAGTCATTGCCAAGAAAAGTCCATTCATAGTCACCCACACCTTCCAAAGCCTTATTACTT
GCTGGAAATAGTTTTACAATCTCATAATTGATTTTAAGCCA
Done.