Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399211.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2479.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1588
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.20

Warning! 708 characters in sequence are not A, C, G, or T


Found at i:334 original size:171 final size:171

Alignment explanation


    Indices: 1--379  Score: 392
    Period size: 171  Copynumber: 2.2  Consensus size: 171

                       *               *     *            *      *           
          1 AAATGTAAAAACATT-TAACTTAAAATTAATTATGAGATTATAAAACCATTTAGAGCGAATAATA
          1 AAATGTAAAAAAATTCTAACTTAAAATCAATTACGAGATTATAAAAACATTTAAAGCGAATAATA

              *                           *          ***                     
         65 AGGCTTTAAAAGGCATAGGTGAGCATAAATGGATGATTCTTGTTAATGGATATATTTTTCTTCAC
         66 AGCCTTTAAAAGGCATAGGTGAGCATAAATAGATGATTCTTACAAATGGATATATTTTTCTTCAC

            *         *                               
        130 GTGTCCCGAGGTAGACAGTTAATTATAATCTGTTTTAATAAA
        131 ATGTCCCGAGATAGACAGTTAATTATAATCTGTTTTAA-AAA

                  *     *                       *          *           *     
        172 AAATG-CAAAAATTTCTAACTTAAAATCAATTACGATATTATAAAAATATTTAAAGCGAGTAATA
          1 AAATGTAAAAAAATTCTAACTTAAAATCAATTACGAGATTATAAAAACATTTAAAGCGAATAATA

                   **                            *  *              *        *
        236 AGCCTTTTGAAGGCATAGGTGA-CTATAAATAGACT-TTTTTTACAAATGGATATCTTTTTCTTT
         66 AGCCTTTAAAAGGCATAGGTGAGC-ATAAATAGA-TGATTCTTACAAATGGATATATTTTTCTTC

             *  * * *                  * *           ** 
        299 ATATTTTCTGAGATAGACA-TTCAATTCTTATCTGTTTTAACCA
        129 ACATGTCCCGAGATAGACAGTT-AATTATAATCTGTTTTAAAAA

                                             *     
        342 AAATGTAAAAAAATTC-AACTTAAAATCAATTATGAGAT
          1 AAATGTAAAAAAATTCTAACTTAAAATCAATTACGAGAT

        380 NNNNNNNNNN


Statistics
Matches: 168,  Mismatches: 35, Indels: 11
        0.79            0.16        0.05

Matches are distributed among these distances:
 170   35  0.21
 171  132  0.79
 172    1  0.01

ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36


Consensus pattern (171 bp):   
AAATGTAAAAAAATTCTAACTTAAAATCAATTACGAGATTATAAAAACATTTAAAGCGAATAATA
AGCCTTTAAAAGGCATAGGTGAGCATAAATAGATGATTCTTACAAATGGATATATTTTTCTTCAC
ATGTCCCGAGATAGACAGTTAATTATAATCTGTTTTAAAAA
Done.