Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399215.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2484.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1762
ACGTcount: A:0.22, C:0.09, G:0.08, T:0.24

Warning! 631 characters in sequence are not A, C, G, or T


Found at i:1432 original size:171 final size:169

Alignment explanation


    Indices: 1209--1754  Score: 521
    Period size: 171  Copynumber: 3.2  Consensus size: 169

       1199 ATTCACTAGC

                      *     *                *       *   *                   
       1209 AAGAAAAGTCTATTTAGAGTCACTCAAGCCTTTGAAAGCCTCATTGCTCGCTTTAAATTGTTTTA
          1 AAGAAAAGTCCATTTATAGTCACTCAAGCC-TTAAAAGCCTTATTACTCGCTTTAAATTGTTTTA

            *                    *                                           
       1274 GAATCTCATAATTGAATTTAACTTAAATTGTTTTTCATTTTTAGTTAAAATAAATTATATTTGAA
         65 TAATCTCATAATTGAATTTAAGTTAAATTGTTTTT-ATTTTTAGTTAAAATAAATTATATTTGAA

                           *                          
       1339 TGTTTGCCTCAGGAACCGTGAAGCAAAAGCCATCCATTAG-T
        129 TGTTTGCCTCAGGAAACGTGAAGCAAAAGCCATCCATT-GCT

                                                         *            * *    
       1380 AAGAAAAGTCCATTTATAGTCACTCAAGCCATTAAAAGCCTTATTTCTCGCTTTAAATGGCTTTA
          1 AAGAAAAGTCCATTTATAGTCACTCAAGCC-TTAAAAGCCTTATTACTCGCTTTAAATTGTTTTA

                                *    *                 *       * *           
       1445 TAATCTCATAATT-AATTTTTAGTTGAATTGTTTTATATTTTTGGTTAAAACAGATTATATTTGA
         65 TAATCTCATAATTGAA-TTTAAGTTAAATTGTTTT-TATTTTTAGTTAAAATAAATTATATTTGA

                  * *     *    *     **      * *       
       1509 ATGTTTACTTC-GAAAAACATGAAGTGAAAGCCTTGCATTGCT
        128 ATGTTTGCCTCAG-GAAACGTGAAGCAAAAGCCATCCATTGCT

                      **            *               *   *      *             
       1551 AAGGAAAA-TTTATTTTATAGTCATTCAAGCCTTCAAAAGACTTCTTACTCCCTTTAAA-TGCTT
          1 AA-GAAAAGTCCA-TTTATAGTCACTCAAGCCTT-AAAAGCCTTATTACTCGCTTTAAATTG-TT

                        *     *                          *          *   *  **
       1614 TTATAATCTCATGATTGATTTTAAGTTAAA-TGTTTTTATATTTTTGATTAAAATATATTTTAAC
         62 TTATAATCTCATAATTGAATTTAAGTTAAATTGTTTTTAT-TTTTAG-TTAAAATAAATTATATT

                   *            *          * *           *
       1678 TGAATGTCTGCCTCA-GAAATGTGAAGCAAATGTCATCCATTTGCA
        125 TGAATGTTTGCCTCAGGAAACGTGAAGCAAAAGCCATCCA-TTGCT

              *    *                        
       1723 AAAAAAAATCCATTTATAGTCACTCAAGCCTT
          1 AAGAAAAGTCCATTTATAGTCACTCAAGCCTT

       1755 CGAAAGCC


Statistics
Matches: 301,  Mismatches: 60, Indels: 28
        0.77            0.15        0.07

Matches are distributed among these distances:
 170    7  0.02
 171  194  0.64
 172   99  0.33
 173    1  0.00

ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39


Consensus pattern (169 bp):   
AAGAAAAGTCCATTTATAGTCACTCAAGCCTTAAAAGCCTTATTACTCGCTTTAAATTGTTTTAT
AATCTCATAATTGAATTTAAGTTAAATTGTTTTTATTTTTAGTTAAAATAAATTATATTTGAATG
TTTGCCTCAGGAAACGTGAAGCAAAAGCCATCCATTGCT

Done.