Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399219.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2488.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1367
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.14

Warning! 855 characters in sequence are not A, C, G, or T


Found at i:54 original size:21 final size:21

Alignment explanation


    Indices: 25--64  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

         15 GCATGGGTGA

                                  
         25 CAATAAATGGACTTT-TCTTGC
          1 CAATAAATGG-CTTTCTCTTGC

                *              
         46 CAATGAATGGCTTTCTCTT
          1 CAATAAATGGCTTTCTCTT

         65 TGCGTTTCTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40


Consensus pattern (21 bp):   
CAATAAATGGCTTTCTCTTGC

Found at i:1320 original size:171 final size:171

Alignment explanation


    Indices: 1053--1364  Score: 418
    Period size: 171  Copynumber: 1.8  Consensus size: 171

       1043 TGAAGAAATG

                                   * *               *                     * 
       1053 GGTGACTATAAATGGACTTTTCTTGTCAATGAGTGGCTTTTTCTTCATGTTTCACAAGATAGATA
          1 GGTGACTATAAATGGACTTTTCTAGCCAATGAGTGGCTTTTGCTTCATGTTTCACAAGATAGACA

                    *     *       *                                          
       1118 TTCAATTATAATATGTTTTATCTAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGAGTT
         66 TTCAATTACAATATATTTTATCCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGA-TT

                                                      
       1183 -TAAAACCATTTGAAGCGAGTAATAAGGCTTTTAAAGGCTAA
        130 ATAAAACCATTTGAAGCGAGTAATAAGGCTTTTAAAGGCTAA

                *    *                                                       
       1224 GGTGGCTATGAATGGACTTTTCTAGCCAATG-GTTGGCTTTTGCATT-ATGTTTC-CTGAAG-TA
          1 GGTGACTATAAATGGACTTTTCTAGCCAATGAG-TGGCTTTTGC-TTCATGTTTCAC--AAGATA

                  *       *             *       *                    *       
       1285 GACATTTAATTACACTATATTTTATCCATAAATGTATAAAAATTCAACTTAAAATCACTTATGAG
         62 GACATTCAATTACAATATATTTTATCCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAG

                           
       1350 ATTATAAAACCATTT
        127 ATTATAAAACCATTT

       1365 AAA


Statistics
Matches: 122,  Mismatches: 14, Indels: 10
        0.84            0.10        0.07

Matches are distributed among these distances:
 170    4  0.03
 171  113  0.93
 172    5  0.04

ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37


Consensus pattern (171 bp):   
GGTGACTATAAATGGACTTTTCTAGCCAATGAGTGGCTTTTGCTTCATGTTTCACAAGATAGACA
TTCAATTACAATATATTTTATCCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTA
TAAAACCATTTGAAGCGAGTAATAAGGCTTTTAAAGGCTAA
Done.