Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397450.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_377.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17470
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.20

Warning! 7817 characters in sequence are not A, C, G, or T


Found at i:2095 original size:51 final size:52

Alignment explanation


    Indices: 1977--2098  Score: 156
    Period size: 52  Copynumber: 2.4  Consensus size: 52

       1967 CCACTTTAAT

                     *      *                           *      *
       1977 TTTCCTTGCCAGTATGTAACCCGTGCTTTGAGCTCGGGGCAATATGTTTTCT
          1 TTTCCTTGCTAGTATGCAACCCGTGCTTTGAGCTCGGGGCAATAGGTTTTCC

                    * *                   *          *          
       2029 TTTCCTTGTTGGTATGCAACCCGTGCTTTGGGCTC-GGGCATTAGGTTTTCC
          1 TTTCCTTGCTAGTATGCAACCCGTGCTTTGAGCTCGGGGCAATAGGTTTTCC

                 *             
       2080 TTTCCCTGCTAGTATGCAA
          1 TTTCCTTGCTAGTATGCAA

       2099 TCGAAGACTT


Statistics
Matches: 59,  Mismatches: 11, Indels: 1
        0.83            0.15        0.01

Matches are distributed among these distances:
  51   29  0.49
  52   30  0.51

ACGTcount: A:0.14, C:0.24, G:0.24, T:0.39


Consensus pattern (52 bp):   
TTTCCTTGCTAGTATGCAACCCGTGCTTTGAGCTCGGGGCAATAGGTTTTCC
Done.