Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399223.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2491.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4654
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.22

Warning! 1950 characters in sequence are not A, C, G, or T


Found at i:2457 original size:17 final size:16

Alignment explanation


    Indices: 2429--2462  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2419 GAAAGCCTCA

                            
       2429 TTAAACTTTTTTTCAG
          1 TTAAACTTTTTTTCAG

                            
       2445 TTAAACTTTTTTTCAG
          1 TTAAACTTTTTTTCAG

              
       2461 TT
          1 TT

       2463 TTTATTAATA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59


Consensus pattern (16 bp):   
TTAAACTTTTTTTCAG

Found at i:2937 original size:171 final size:171

Alignment explanation


    Indices: 2748--3166  Score: 513
    Period size: 170  Copynumber: 2.5  Consensus size: 171

       2738 CCCGCCAATG

                  *    *                   * *   *         *   *             
       2748 GATATCATTTTGTTTATGTTTTTTC-AGGCAGATATTTAATTATAATATGTATTAATAAAAAATA
          1 GATATCTTTTTCTTTATG-TTTTTCGAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATA

                                 *                    * *       *            
       2812 AAAAAAAATTTAACTGAAAACTAATTATGA-GATTAAAAAATTATTTAAAGTGAGTAAGAAGGCT
         65 AAAAAAAATTTAACTGAAAACCAATTATGACG-TTAAAAAATCAGTTAAAGTAAGTAAGAAGGCT

                  **                                    
       2876 TTCGAAGGCATGGGTGACTACAAATGGA-TCTTTTTTGCCAAAA
        129 TTCGAAAACATGGGTGACTACAAATGGACT-TTTTTTGCCAAAA

               *                 **     *                                    
       2919 GATGTCTTTTTCTTTATGTTTCCCGAGGTAAACATTCAATTATAATCTGTTTTAATAAAAAAT-A
          1 GATATCTTTTTCTTTATGTTTTTCGAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATAA

            *    *      * *                   *                     *        
       2983 TAAAATATTTAAATTAAAACCAATTATGACGTTATAAAATCAGTTAAAGTAAGTAATAAGGCTTT
         66 AAAAAAATTTAACTGAAAACCAATTATGACGTTAAAAAATCAGTTAAAGTAAGTAAGAAGGCTTT

                                               *   * 
       3048 CGAAAACATGGGTGACTACAAATGGACTTTTTTTGTCAATA
        131 CGAAAACATGGGTGACTACAAATGGACTTTTTTTGCCAAAA

                          * **                                              *
       3089 GATATCTTTTTCTTCACATTTTTCGAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATAT
          1 GATATCTTTTTCTTTATGTTTTTCGAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATAA

                  *      
       3154 AAAAAAGTTTAAC
         66 AAAAAAATTTAAC

       3167 NNNNNNNNNN


Statistics
Matches: 207,  Mismatches: 37, Indels: 8
        0.82            0.15        0.03

Matches are distributed among these distances:
 170  149  0.72
 171   58  0.28

ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37


Consensus pattern (171 bp):   
GATATCTTTTTCTTTATGTTTTTCGAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATAA
AAAAAAATTTAACTGAAAACCAATTATGACGTTAAAAAATCAGTTAAAGTAAGTAAGAAGGCTTT
CGAAAACATGGGTGACTACAAATGGACTTTTTTTGCCAAAA

Done.