Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399224.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2492.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3561
ACGTcount: A:0.22, C:0.08, G:0.07, T:0.22

Warning! 1481 characters in sequence are not A, C, G, or T


Found at i:3061 original size:171 final size:160

Alignment explanation


    Indices: 2770--3081  Score: 299
    Period size: 171  Copynumber: 1.9  Consensus size: 160

       2760 NNNNNNNNNN

                          *         *  *                 *                   
       2770 CCATTCCTTCAAAAGCCTTATTACTCATTTTAAATGATTTTCTAATCTAATAATAGATTTTAAGT
          1 CCATTCCTTCAAAACCCTTATTACCCACTTTAAATGATTTTCTAAACTAATAATAGATTTTAAGT

                                                       *    *         *      
       2835 TGAAGTTTTTTAATTTTTTTGTTAAAACAGACAATAATTAACTGTCTATCTCGAGAAAGATGAAG
         66 TGAAGTTTTTTAA-TTTTTTGTTAAAACAGACAATAATTAACTATCTACCTCGAGAAACATGAAG

             *    *                                  
       2900 ACAAAAGCATTCATTGACAAGAAAANNNNNNNNNNAGTCAC
        130 AAAAAAACATTCATTGACAAGAAAA----------AGTCAC

                                      *                      *     *       * 
       2941 CCATTCCTTCAAAACCCTTATTACCCGCTTTAAAT-AGTTTTCTAAACTCATAATTGATTTTAGG
          1 CCATTCCTTCAAAACCCTTATTACCCACTTTAAATGA-TTTTCTAAACTAATAATAGATTTTAAG

                                      *        *   *         *               
       3005 TTGAA-TTTGTTTACA-TTTTTGATTGAAACAGACCATATTTGAA-TATTTACCTCGAGAAACAT
         65 TTGAAGTTT-TTTA-ATTTTTTG-TTAAAACAGACAATAATT-AACTATCTACCTCGAGAAACAT

                           
       3067 GAAGAAAAAAACATT
        126 GAAGAAAAAAACATT

       3082 NNNNNNNNNN


Statistics
Matches: 119,  Mismatches: 17, Indels: 10
        0.82            0.12        0.07

Matches are distributed among these distances:
 170   10  0.08
 171  106  0.89
 172    3  0.03

ACGTcount: A:0.36, C:0.15, G:0.11, T:0.35


Consensus pattern (160 bp):   
CCATTCCTTCAAAACCCTTATTACCCACTTTAAATGATTTTCTAAACTAATAATAGATTTTAAGT
TGAAGTTTTTTAATTTTTTGTTAAAACAGACAATAATTAACTATCTACCTCGAGAAACATGAAGA
AAAAAACATTCATTGACAAGAAAAAGTCAC
Done.