Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399225.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2493.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5009
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.20

Warning! 2386 characters in sequence are not A, C, G, or T


Found at i:91 original size:21 final size:21

Alignment explanation


    Indices: 65--105  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         55 GGAGAAATGT

                                 
         65 GAAGAAAAAAGCATTCATTGG
          1 GAAGAAAAAAGCATTCATTGG

                     *     *    
         86 GAAGAAAAATGCATTTATTG
          1 GAAGAAAAAAGCATTCATTG

        106 CCACCTATTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.46, C:0.07, G:0.22, T:0.24


Consensus pattern (21 bp):   
GAAGAAAAAAGCATTCATTGG
Done.