Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399227.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2495.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769

Length: 1282
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.28

Warning! 254 characters in sequence are not A, C, G, or T


Found at i:842 original size:171 final size:164

Alignment explanation


    Indices: 628--1092  Score: 395
    Period size: 170  Copynumber: 2.8  Consensus size: 164

        618 ATAAAGCAAC

                                               **         *           *      
        628 TAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATAAACTTTTCTCACTAAT-AGATGGCTTTTG
          1 TAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATGGACTTTTCTCGCTAATGA-ATGACTTTTG

                             *     *                                     *** 
        692 CTTCACATTTTCTAAGGTAAACACTCAATTATAATATATTTTAACTAAAAATGTAAAAAAGTTGA
         65 CTTCACATTTTCTAAGGCAAACATTCAATTATAATATATTTTAACTAAAAATGTAAAAAAGAAAA

                                          ***         
        757 ACTTAAAATCAATTATGAGATTTNNNNNNNNNNTAAAGTGAG
        130 ACTTAAAATCAATTATGAGATTT-------ATTTAAAGTGAG

                               *          *              *  *               *
        799 TAATAAGGCTTTTGAAGGCATGAGTGACTAAAAATGGACTTTTCTGGCCAATGAAT-ACCTTTTT
          1 TAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATGGACTTTTCTCGCTAATGAATGA-CTTTTG

                  *              *            *    *                         
        863 C-TCTATATTTT-TCAAGGCAGACATTCAATTATGATATTTTTTAA-TCAAAAATGT-AAAAAGA
         65 CTTC-ACATTTTCT-AAGGCAAACATTCAATTATAATATATTTTAACT-AAAAATGTAAAAAAGA

                      *                   ***            
        924 AAAACTTAAAGTCAATTATGAGANNNNNNNNNNATTTAAAGTGAG
        127 AAAACTTAAAATCAATTATGAGA-------TTTATTTAAAGTGAG

                       **   *          *               * *       *           
        969 TAATAAGGCTTCCGAAAGCTTGAGTGAATATAAATGGACTTTTGTTGCTAATGCATGACTTTTGC
          1 TAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATGGACTTTTCTCGCTAATGAATGACTTTTGC

                                 *                       *              
       1034 TTCACA-TTTCTTAAGGCAAAAATTCAATTATAATATATTTTAACCAAAAATGTAAAAAA
         66 TTCACATTTTC-TAAGGCAAACATTCAATTATAATATATTTTAACTAAAAATGTAAAAAA

       1093 AATTNNNNNN


Statistics
Matches: 234,  Mismatches: 42, Indels: 36
        0.75            0.13        0.12

Matches are distributed among these distances:
 169    3  0.01
 170  128  0.55
 171  102  0.44
 172    1  0.00

ACGTcount: A:0.37, C:0.11, G:0.14, T:0.34


Consensus pattern (164 bp):   
TAATAAGGCTTTTGAAGGCTTGAGTGACTATAAATGGACTTTTCTCGCTAATGAATGACTTTTGC
TTCACATTTTCTAAGGCAAACATTCAATTATAATATATTTTAACTAAAAATGTAAAAAAGAAAAA
CTTAAAATCAATTATGAGATTTATTTAAAGTGAG
Done.