Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399231.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2499.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4472
ACGTcount: A:0.18, C:0.07, G:0.05, T:0.19

Warning! 2249 characters in sequence are not A, C, G, or T


Found at i:1322 original size:19 final size:19

Alignment explanation


    Indices: 1291--1327  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1281 TGATAAGAAA

                               
       1291 AATCCATTTATAGCCTTTC
          1 AATCCATTTATAGCCTTTC

                               
       1310 AATCC-TTTAATAGCCTTT
          1 AATCCATTT-ATAGCCTTT

       1328 TTACTCGTTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    3  0.18
  19   14  0.82

ACGTcount: A:0.27, C:0.24, G:0.05, T:0.43


Consensus pattern (19 bp):   
AATCCATTTATAGCCTTTC
Done.