Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399233.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2500.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.25, C:0.08, G:0.08, T:0.23

Warning! 367 characters in sequence are not A, C, G, or T


Found at i:883 original size:170 final size:168

Alignment explanation


    Indices: 450--903  Score: 412
    Period size: 170  Copynumber: 2.7  Consensus size: 168

        440 NNNNNNNNTG

                       *                   *  *                 *            
        450 AGGTAGACATTCAATTATAATCTGTTTTAACCAATAATGTAAAAAAATTGAAATTAAAAT-ATAT
          1 AGGTAGACATTTAATTATAATCTG-TTTAA-TAAAAATGTAAAAAAATTGAACTTAAAATCA-AT

                       *   *          *   *********                          
        514 TTTGAGATTATAAAATCATTTAAAGCAAGNNNNNNNNNNTTTGAAGGAATGCGTGACTATAAATG
         63 TTTGAGATTATTAAACCATTTAAAGCGAG-TAACAAGGCTTTGAAGGAATGCGTGACTATAAATG

                      *                       **     *
        579 GACATTTCTTGCCAATGAATGCCTTTTTCTCCACGTTTCTCT
        127 GACATTTCTTACCAATGAATGCCTTTTTCTCCACACTTCTCA

                               *                        *              *     
        621 AGGTAGACATTTAATTATAGTCTGTTTGAACTAAAAATGTAAAACAATTCG-ACTTAAATTCAAT
          1 AGGTAGACATTTAATTATAATCTGTTT-AA-TAAAAATGTAAAAAAATT-GAACTTAAAATCAAT

             *            *********          *                               
        685 TATGAGATTA-TANNNNNNNNNNAAGCGAGTAATAAGGCTATTGAAGGAATGCGTGACTAT-AAT
         63 TTTGAGATTATTA-AACCATTTAAAGCGAGTAACAAGGCT-TTGAAGGAATGCGTGACTATAAAT

                *   *              *       *           
        748 GGACTTTTTTTACCAATGAATGCTTTTTTCTTCACACTTCTCA
        126 GGACATTTCTTACCAATGAATGCCTTTTTCTCCACACTTCTCA

             *                                                   *           
        791 ATGTAGACATTTAATTATAATCTGTTCTAATAAAAAATGTAAAAAAATTGAACCTAAAATCAATT
          1 AGGTAGACATTTAATTATAATCTGTT-TAAT-AAAAATGTAAAAAAATTGAACTTAAAATCAATT

                                                            
        856 TTGAGATTATTAAACCATTTAAAGCGAGTAACAAGGCTTTTGAAGGAA
         64 TTGAGATTATTAAACCATTTAAAGCGAGTAACAAGGC-TTTGAAGGAA

        904 NNNNNNNNNN


Statistics
Matches: 221,  Mismatches: 52, Indels: 21
        0.75            0.18        0.07

Matches are distributed among these distances:
 169    2  0.01
 170  129  0.58
 171   88  0.40
 172    2  0.01

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.33


Consensus pattern (168 bp):   
AGGTAGACATTTAATTATAATCTGTTTAATAAAAATGTAAAAAAATTGAACTTAAAATCAATTTT
GAGATTATTAAACCATTTAAAGCGAGTAACAAGGCTTTGAAGGAATGCGTGACTATAAATGGACA
TTTCTTACCAATGAATGCCTTTTTCTCCACACTTCTCA
Done.