Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399240.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2509.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1960
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.16

Warning! 1103 characters in sequence are not A, C, G, or T


Found at i:637 original size:20 final size:20

Alignment explanation


    Indices: 614--661  Score: 87
    Period size: 20  Copynumber: 2.4  Consensus size: 20

        604 TATTACAAAT

                                
        614 ATGAATAAAGTATTGTAAAC
          1 ATGAATAAAGTATTGTAAAC

                               *
        634 ATGAATAAAGTATTGTAAAT
          1 ATGAATAAAGTATTGTAAAC

                    
        654 ATGAATAA
          1 ATGAATAA

        662 TTAGTTAAGG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   27  1.00

ACGTcount: A:0.52, C:0.02, G:0.15, T:0.31


Consensus pattern (20 bp):   
ATGAATAAAGTATTGTAAAC
Done.