Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397452.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2595.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17350
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.31
Warning! 2494 characters in sequence are not A, C, G, or T
Found at i:334 original size:171 final size:161
Alignment explanation
Indices: 151--485 Score: 341
Period size: 171 Copynumber: 2.0 Consensus size: 161
141 NNAAACTATT
* * * * *
151 TAAAGTGAGTAATTAGGCTTTTGAAGGAATGGGTGATTACAAATGGAC-TTTTTTTACTAATAAA
1 TAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTACAAATAGACTTTTTTTTACTAATAAA
* * * * * **
215 TGCCTTTTTCTTCATGTTTC-TGAAGGTAGACATTCAAAAATAGTCTATTTTAATGAAAAATATA
66 TGCCTTTCTCTTCAGGTTTCTTG-AGCTAAACATTCAAAAATAGTCTACTTTAACAAAAAATATA
* *
279 AAAATATTCAACTTAAAATCAAGTATGAGATTA
130 AAAA-ATACAACTTAAAATCAACTATGAGATTA
*
312 TANNNNNNNNNNAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTTTTTT
1 TA----------AAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTACAAATAGACTTTTTTT
* * * * ** *
377 TGCTAATGAATGTCTTTCTCTTCAGGTTTCTTGAGCTAAACATTTAATTATAGTCTGCTTTAACA
56 TACTAATAAATGCCTTTCTCTTCAGGTTTCTTGAGCTAAACATTCAAAAATAGTCTACTTTAACA
*
442 AAAAATATAAAAAATACAACTTAAAATTAACTATGAGATTA
121 AAAAATATAAAAAATACAACTTAAAATCAACTATGAGATTA
483 TAA
1 TAA
486 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 23, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
161 3 0.02
171 67 0.48
172 67 0.48
173 2 0.01
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.35
Consensus pattern (161 bp):
TAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTACAAATAGACTTTTTTTTACTAATAAA
TGCCTTTCTCTTCAGGTTTCTTGAGCTAAACATTCAAAAATAGTCTACTTTAACAAAAAATATAA
AAAATACAACTTAAAATCAACTATGAGATTA
Found at i:1450 original size:170 final size:171
Alignment explanation
Indices: 923--2786 Score: 1517
Period size: 170 Copynumber: 10.9 Consensus size: 171
913 NNNNNNNNNN
* * * * *
923 CAATTTTGGGATTATAAAACCATTTAAAGCAAGTAATAAGGCTTTTGAAAGAATAGATGA-TAAT
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACT-AT
* * * * * * * *
987 AAATGGACTTTTCTTACTAATGAATTCATTTTTCTTTATGTTTCTCAATGTAGACATTTAGTTAT
65 AAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTAT
* * * * *
1052 AATATGTTTTAAAGCAAAAAAGTAAAAAAATCTGAACTTAAAAT
130 AGTCTGTTTT-AATCAAAAATGTAAAAAAATAT-AACTTAAAAT
* * * * * *
1096 CAATTATGAGATTATAAAACCTTTTAAAGCAAATAATAAAGATTTTGAAGGAATGGGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* * * * * * ** *
1161 AATAGATTTTTCTTGCCAATGAATTCC-TTTTCTTCATGTTTCTTAAGGTGGGCATTCAACAATG
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * * ******
1225 GTCTATTTTAACCAAAAATGTAAAACAAT-TCAACTNNNNNNN
131 GTCTGTTTTAATCAAAAATGTAAAAAAATAT-AACT-TAAAAT
*** * * * * *
1267 NNNTT-TTAGATTATAAAACCATTTAAAGCAAGCAATAATGCTTTTGAAAGAATGAGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* * * *
1331 AATGAAATTTTCTTGCCAATGAATGCCTTTTT-TTC-TGGTTTCTCGAGCTAGACATTCAATTAT
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCAT-GTTTCTCAAGGTAGACATTCAATTAT
* *
1394 AGTCTATTTTAATCAAAAATATAAAAAAATATAACTTAAAAT
130 AGTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
* * * * * * * *
1436 CATTTATAAGATTATAAAAGCTTTTACAGCGAGTAATAAGGTTTTTTAAAGAATGGGTGACTGTA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* * * ** * *
1501 AATGGACTTTTTTTACTAATGAATATCTTTTTCTTCATGTTTCTCAAGGTAGACATTCACTTCTA
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * *
1566 GTCTG-TTTAATTAAAAATGTAAAAAAATACAACTTCAAAT
131 GTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
* * * * *
1606 CAATTATGAGACTATAAAATCATTTACAGCGAGTAATAAGGC-TTTGAAAAGAATGAGTGAGTAT
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG-AAAGAATGGGTGACTAT
* * * * **
1670 AAATGGA-TATTT-TATGCCAATGAATGACTTTTTTTTCATGTTTTTCGAGGTAGGTATTCAATT
65 AAATGGACT-TTTCT-TGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATT
* *
1733 ATAGTCTGTTCTAATAAAAAATGTAAAAAAA-ATTCAACTTAAAAT
128 ATAGTCTGTTTTAATCAAAAATGTAAAAAAATA-T-AACTTAAAAT
********** * * *
1778 CANNNNNNNNNNTATAAAACCATTGAAAGCGAGTATTAAGGCTTTTGAAAAAATGGGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* * * ** * * * *
1843 AATGGTCTTTTCTTTCCAATGACTATCTTTTTCTTCAAGTTTCTCGAGCTAGACATTCAACTATA
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * *
1908 GTTTGTTTCAA-CAAAAAATG-AAAAAAAAATTCAACTTAAAAT
131 GTCTGTTTTAATC-AAAAATGTAAAAAAATA-T-AACTTAAAAT
* * *
1950 CAATAATTAGATTATAAAACCATTTAAGGCGAGTAATAAGGCTTTTGAAAGAATGGGTGA-TCAT
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACT-AT
********** * *
2014 AAATGGACTTTTCTTGCCAATGAANNNNNNNNNNTTCATGTTTTTCAAGGTAAACATTCAGA-TA
65 AAATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCA-ATTA
* * *
2078 TTA-TCTGTTTTAATCAAAAATGTAAAAAAATTTAATTTAATAT
129 -TAGTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
* * * * * *
2121 TAATTATCAAATTATAAAACCGTTTAAAGCAAGTAATAAGGCTTTTGAAAGAATGAGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* ********** * *
2186 AATGCACTTTTCTNNNNNNNNNNTGCTTTTTTCTTCATGTTTCTCAAGGTAGACATTCAACTATA
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
** *
2251 GTCTGTTTTAATCAAAAATGT-AAAAAATGCAATTTAAAAT
131 GTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
* * * *
2291 CAATTATGAGATTATAAAACCATTTAAAACGATTAATCAGGCTTCTGAAAGAATGGGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
* * ** * ** * *
2356 AATAGACTTTTCTTCCCAATGAATATCTTTTTGTTCATGTTTCTTGAGGTAGGCATTAAATTATA
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * *
2421 GTCTGTTTTAATCAAAAATGTAAATAAATACAATTTAAAAT
131 GTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
* * *
2462 CAATTAT--GATTATAAAACCATTTAAAGTGAGTAATAA-GCTTTAGAAAGAATGGGTGACAATA
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
** * * * * *
2524 AATGGACTTTTCTTTTCAATAAATGCCTTTCTCTTCATATTTTTCGAGGTAGACATTCAATTATA
66 AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
* * * *********
2589 ATCTGTTTTAACCAATAATGTAAAAAAA-ATTNNNNNNNNNNT
131 GTCTGTTTTAATCAAAAATGTAAAAAAATA-T-AACTTAAAAT
* * * * *
2631 CAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGG-TTTTTAAATGAATAGGAGACTAT
1 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAA-GAATGGGTGACTAT
* * ** * * ** * * *
2695 AAATGGACTTTT-TCTACCCATGAAT-ATTTTTTTTTCACGTTTCTTGAGATAGATATTTAATTA
65 AAATGGACTTTTCT-TGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTA
2758 TAGTCTGTTTTAATCAAAAATGTAAAAAA
129 TAGTCTGTTTTAATCAAAAATGTAAAAAA
2787 TTCAACTGAA
Statistics
Matches: 1335, Mismatches: 321, Indels: 72
0.77 0.19 0.04
Matches are distributed among these distances:
167 1 0.00
168 98 0.07
169 42 0.03
170 481 0.36
171 315 0.24
172 304 0.23
173 93 0.07
174 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.36
Consensus pattern (171 bp):
CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAAGAATGGGTGACTATA
AATGGACTTTTCTTGCCAATGAATGCCTTTTTCTTCATGTTTCTCAAGGTAGACATTCAATTATA
GTCTGTTTTAATCAAAAATGTAAAAAAATATAACTTAAAAT
Found at i:5242 original size:171 final size:170
Alignment explanation
Indices: 3244--10178 Score: 4457
Period size: 171 Copynumber: 40.7 Consensus size: 170
3234 NNNNNNNNNN
* ** * * ** * *
3244 TTTTGAAAGAATGTGTGACTATAAATGGACTTTTCTTCGGAATAAATAT-TTTTTTCAACATGCT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GCCATGAATGTCTTTTTTCTTCACGTT
* * ** *
3308 TCTCGAGGCA-ACCATTCAATTATAGTTTGTTTTAATGAAAAATAT-AAAAATTCAACTTCAAAT
65 TCTCGAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAAT
* * ** *
3371 CAATTATGAGATTCTAAAACGATTTAAAATGAGTAATAAGGA
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ********** * * * * * *
3413 TTTTGAAGGNNNNNNNNNNTATAAATAGACTTTTCTTACCAAGGAATG-CCTTTTTCTTCATGCT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * **********
3477 TCTC-ATGGTAAACATACAACTATAATCTGTTTTAACCAAAAATACAAAAAAATNNNNNNNNNNA
65 TCTCGA-GGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAAAAATTCAACTTAAAA
* * * *
3541 TCAATTATGAGATTATTAAACTATTTAAAGCGAGTACTAAGGG
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ***
3584 TTTTAAAAGAATGAAAAACTATAAATGGACTTTTCTTGCCATTGAATGTC-TTTTTCTTCACGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCCA-TGAATGTCTTTTTTCTTCACGTT
** * ** * *
3648 TCTTAAGGTAGACATTTAACAATAGTCCGTTTTAACCAAAAGTATAAAAACAATTCAACTTAAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAA-AATTCAACTTAAAA
* * *
3713 TCAGTTTTGGGATTATAAAACCATTTAAAGCGAGTAATAAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * *
3756 ATTTGAAAGAATGGGTTACTACAAATGGACATTTCTTGCCAATG-ATGTC-TTTTTCTTCAGGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * * * * *
3819 TTTTGAAGTACATATTCAATTATAGTTTGTTTTAACTAAAAAGATAAAAAAATACAACTTAAAAT
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAAT
**********
3884 CAATTATGAGATTATAAAACCATNNNNNNNNNNTAATAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *
3926 TTTTGAAAGAATGAGTGAGTATAAATGGACATTTT-TTGCCAATGAATG-CTTTTTTCTTTACG-
1 TTTTGAAAGAATGAGTGACTATAAATGGAC-TTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGT
** * *
3988 TTCTCCGAGACA-AGCATTCAATTATAGTTTGTTTT-ACCTAAAAATGTAAAAAATTCAACTTAA
64 TTCT-CGAGGTAGA-CATTCAATTATAGTCTGTTTTAACC-AAAAATATAAAAAATTCAACTTAA
* *
4051 AATCAATTATGAGATTA-ACAAACCATTTAAAGCAAGTAATAAGGA
126 AATCAATTATGAGATTATA-AAACCATTTAAAGCGAGTAATAAGGC
********* * * * *
4096 TTTNNNNNNNNNNGA-TGACTATAAATAGACTTTT-TTGGCTAATGAATG-CTTTTTTTTTCATG
1 TTT-TGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GC-CATGAATGTCTTTTTTCTTCACG
* * *
4158 TTTGTCGAGGTAGACATTCAACTATGGTCTGTTTTAACCAAAAATATAAAAAAATTCAACTTAAA
63 TTTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTT-AA
* * ** *
4223 AATAAATAATGAGATTATAAAATTATTTAAAGCGAGTAATAAGAC
126 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
** ** * *
4268 TTTTGAAAGAATGAGAAACTATAAATGGACTTTTCTTGTTAATGAATGTC-TTTTTCATCATGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTG-CCATGAATGTCTTTTTTCTTCACGTT
** * * * *
4332 TCTCGAGGTAGACATTCAACAATAGTCTATTTTAA-CGAAAATACAAAATAAATTGAACTTAAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAA-AAATTCAACTTAAAA
* ********** *
4396 TCAGTTATNNNNNNNNNNAACCATTTAAAGCGAGTAATAAGAC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * * * * *
4439 ATTTGAAACAATGGGTTACTATTAATGGTCTTTTCTTGCCAATAAATATC-TTTTTCTTTAGGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * ** * *
4503 TTTTGAGGTACACATTCAATTATAGTCTACTTTAACTAAAAA-AGTTAAAAAAATACAACTTAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA--T-AAAAAATTCAACTTAAA
* * *
4567 ATCAATTATGAGATTATAAAACCATTTATAGCGAGGAATAAGGA
127 ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * ** * * * * *
4611 TTTTGAAAAAAAT-TGTGGGTATAAATGGACATTTCTTGGCAACGAATG-CCTTTTT-TTCACAT
1 TTTTG-AAAGAATGAGTGACTATAAATGGACTTTTCTT-GCCATGAATGTCTTTTTTCTTCACGT
* * * * * * * *
4673 TT-TCTGAGGCAGACATTTAATTACAATATGTTTTAATCAAAAATGTAAAAAATTCAACCTAAAA
64 TTCTC-GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAA
* * * * *
4737 TCAATTATGACATTAAAAAATCATTTAAAGCGAGTAACAAGGA
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * *
4780 TTTTGAAGGAAAGAGTGACTATAAATAGACTTTTCTTGCTAATGAATG-CCTTTTTCTTCATGAT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGTT
* * ** * * * *
4844 TCTTGAAGTAGACATTCACCTATAGTCTATTTTAACCAGAAATTTAAAAAAAATTAAACTTAAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCA-AAA-ATATAAAAAATTCAACTTAAAA
* * **********
4909 TGAATAATGAGATTATAAAACCATTTAAANNNNNNNNNNAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * *
4952 TTTTGAAAGAATG-GATGACTATAAATGGACTTTTCCTGTCAATGAATGTC-TTTTTCTTCATGT
1 TTTTGAAAGAATGAG-TGACTATAAATGGACTTTTCTTG-CCATGAATGTCTTTTTTCTTCACGT
* * * * * * * * *
5015 CTCTTGAGGTAGACATTTAGTTATATTCTGTTTTAACTAAAAATGTAAACAAATTCAAATTAATA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAA-AAATTCAACTTAAAA
* * *
5080 TTAATTATGAGATTATAAAACCGTTTAAAGCGAGTAATAAGAC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * *
5123 TTTTGAAAGAATGAGTGACTATAAATGCACTTTTTTTATCCATGAATGTCTTTTTTTTTCACGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GCCATGAATGTCTTTTTTCTTCACGTT
* * * * *
5188 TCTCAAGGTAGACGTTAAACTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACATAAAATC
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAATC
* ** *
5253 AATTAAGAGATTATAAAATAATTTAAAGCGATTAATCAA-GC
130 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGC
* * * * * *
5294 TTTTCAAAGAATGGGTGACTATAAATAGACTTTTCTTGCAAATGAATATC-TTTTTCTTCATGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGTT
* * ** * *
5358 TCTCGATGTAGACATTCAATTATAGTCTATTTTAATAAAAAATGTAAAAAAGTACAACTTAAAAT
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAA-TTCAACTTAAAAT
* * **********
5423 CAATTATAAGATTATAAAACCATTTAAACCNNNNNNNNNNGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * *
5465 TTTTGAAGGAATGGGTGACAATAAATGGACTTTTTTTTCCAATGAATG-CCTTTTTCTTCACATT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * * * * *
5529 TTTTGAGGTAGACATTCAATTCTAATCTGTTTTAACTAATAATGTAAAAAAAATTGAAGTTAAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAA-AA-ATATAAAAAATTCAACTTAAAA
***
5594 TCAATTTTAT-A-ATTATAAAACCATTTAAAGCGAGTAATAANNN
128 TCAA--TTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
******** * ** * *
5637 NNNNNNNGGAAT-AGGAGACTATAAATGGACTTTTCCTACCCCTGAATAT-TTTTTTCTTCACGT
1 TTTTGAAAGAATGA-GTGACTATAAATGGACTTTT-CTTGCCATGAATGTCTTTTTTCTTCACGT
* ********** * * * * *
5700 TTCTTGAGGTAGACNNNNNNNNNNAGTCTATTTTAATCAAAAATGTAAAAACTTCAACTAAAAAT
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAAT
* *
5765 C-ATTATGAGATTATAAAACCATTTAAAGCAAGTGATAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * *
5806 TTTTGAACGAATGAGTAACTATAAATGGACCTTTCTTCGCAAATGAATG-CATTTTACTTCACGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GC-CATGAATGTCTTTTTTCTTCACGT
* * *
5870 TTCTCGAGGTA-AGCA-CCTAATTATAGTCTGTTTTAACCAAAAATACAAAAAAATTTAACTTAA
64 TTCTCGAGGTAGA-CATTC-AATTATAGTCTGTTTTAACCAAAAATA-TAAAAAATTCAACTTAA
********** *
5933 AATCAATTATGANNNNNNNNNNCCATTTAAAGCGACTAATAAGGC
126 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * ** * ***
5978 TTTTGAAAGAATCAGTGACTATAAATGGAATTTTCTTGTAATGAATG-CCTTTTTCTTCTTATTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCCATGAATGTCTTTTTTCTTCACGTTT
* * * *
6042 CTCTAGGTAAACAATCAATTATA-ACATGTTTTAACCAAAAATATAAAAAAATTCAACTTAAAAT
66 CTCGAGGTAGACATTCAATTATAGTC-TGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAAT
* **********
6106 CGATTATGANNNNNNNNNNCCATTTAAAGCGAGTAATAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * ** *
6148 TTTTGAAAGAATGAGAGACTAT-AATCGGACTTTTCTT-CCGAATAAATAT-TTGTTTCAACATG
1 TTTTGAAAGAATGAGTGACTATAAAT-GGACTTTTCTTGCC--ATGAATGTCTTTTTTCTTCACG
* ** * *
6210 TTTC-CTGAGGCA-ACCATTCAATTATAGTCTGTTTTAATGAAAAATATAAAACATTTAACTTAA
63 TTTCTC-GAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAA
* *
6273 AATCAATTATAAGATTATAAAACCATTTAAAGCGAGTAATAAGGA
126 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * *
6318 TTTTGAAGGAATGGGTAACTATAAATAGACTTTTCTTACCAATGAATG-CCTTTTTCTTCCCGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * ** * *
6382 TTTCAAGGTAGACATTCAACTATAATATGTTTTAATAAAAAATACAAAAAAATTCAACATAAAAT
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATA-TAAAAAATTCAACTTAAAAT
* *
6447 CAATTACGAGATTATAAAACCATTTAAAGCAAGTAATAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ** * *
6489 TTTTGAAAGAATGTGAAACAATAAATGGACTTTTCTTGCCAATGAATGTC-TTTATCTTCACGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * ** * * **
6553 TCACAAAGTAGACATTCAACAATAGTCTATTTTAACTAAAAATATAAAAAAAATTCAACTTAANN
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT--AAAAAATTCAACTTAAAA
******** * *
6618 NNNNNNNNGAGATTATAAAACTATTTAAATCGAGTAATAAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
6661 ATTTT-AAAGAATGGGTTACTATAAATGGACTCTTCTTGCTAATGAATGTC-TTTTTCTTCAGGT
1 -TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGT
* * ** * * * * * *
6724 TTTTTGATTTACACATTCAATTATAGTCTATTTTAACTAAAAATGTAAAAAAAATACAACTGAAA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA--TATAAAAAATTCAACTTAAA
**********
6789 ATCAATTATGAGATTATAAANNNNNNNNNNGCGAGTAATAAGGC
127 ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * *
6833 TTTTGAAAGTATGAGTGAGTATAAATGGACATTTCTTGCTAATGACTAT-ATTTTTCTTCACGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGTT
* * ** * * *
6897 TTTTGAGGTAGGTATTCAATTATAGTCTGTTTTAACCAAGAATGTAAAAAATTCAACTTTAAATC
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAATC
* * *
6962 AATTATGAGATTAAAAAATCATTTAAAGCGAGTAATAAGGN
130 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
********* * * * * *
7003 NNNNNNNNNAATGGGTGACTATAAATGGACTTTT-TTCGCTAATGAATATC-TTTTTGTACACGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GC-CATGAATGTCTTTTTTCTTCACGT
* ** *
7066 TTCTCGAGGTAGACATTCAACTATAGTCTGTTTTAATTAAAAATACAAAAAAAATT-AACTTAAA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAAT--ATAAAAAATTCAACTTAAA
* * *
7130 ATCAATAATGAGATTATAAAACTATTTAAAGCGATTAATAAGGC
127 ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * *********** *
7174 TTTTGAAAAAATGGGTGACTATAAATGGACTTTTCTTGCCAANNNNNNNNNNTTTCTTCATGTTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCCATGAATGTCTTTTTTCTTCACGTTT
* * * * * * *
7239 CTCAAGGTATG-CATTCAATTATAGTGTGTTTTAACTAAAAATGTAAAAAAATTTAAATTAATAT
66 CTCGAGGTA-GACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAAT
* * * ** * *
7303 TAATTATGATATTATAAAACCGTTTAAAGTAAGTAAAAATGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * *
7345 TTTTGAAAGAATGAGTGACTATAAATGTAATTTTCTTACCAATGAATGT-TCTTTTCTTCATGCT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * *
7409 TCTCGAGATAAACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAATT-AACTTAAAAT
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAAT
* * *
7473 CAATTATGAGTTTATAAAATCATTTAAAGTGAGTAATAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * *
7515 TTTTGAAAGAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATGT-GTTTTTCTTCATG-T
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * *
7578 TCTCGAGGTGGACATTCAATTCTAGTCTGTTTGAACAAAAAATGTAAAAAAAATT-TACTTAAAA
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAA--TATAAAAAATTCAACTTAAAA
* *
7642 TCAATAATGAGATTATAAAACTATTT-AAGACGAGTAATAAGG-
128 TCAATTATGAGATTATAAAACCATTTAAAG-CGAGTAATAAGGC
* * * * * *
7684 TTTTGAAAGAATGGGTGACTATAAATGGACTTTCCTTGTCAATGAATGTCTTTTTGC-ACATGTT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTG-CCATGAATGTCTTTTTTCTTCACGTT
* * * * * *
7748 T-TCCTAAGG-AGACATTCAATTATAGTCTATTTTAACCAAAAATGTAAAAAAATTTAAATTAAT
65 TCT-C-GAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAA
* *
7811 ATTAATTATGGGATTATAAAACCATTTAAAGCGAGTAATAAGGC
127 ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * **
7855 TTTCGAAAGAATGAGTGATTATAAATGCACTTTTCTTACCCATGAATG-CTTTTTTCTTCAAATT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTT-GCCATGAATGTCTTTTTTCTTCACGTT
* * * * * * * ***
7919 TCTCAAGGTAGACATTCAACTATAGTATG-TTTAATC-AAAATGTAAAAAATTTAACATAAANNN
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAATC
******* * *
7982 NNNNNNNAGATTATAAAACCATTTAAAGTGATTAATCAA-GC
130 AATTATGAGATTATAAAACCATTTAAAGCGAGTAAT-AAGGC
* * * * * *
8023 TTTTGAAAGGATTG-GTGACTATAAATAGACTTTTCTTACGAATGAATATC-TTTTTCTTCATGT
1 TTTTGAAA-GAATGAGTGACTATAAATGGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGT
* * **
8086 TTCTCAAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATAAAACTTAAAA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAA
* *
8151 CCAATTATGAGATTATAAAACCATTTAAAGTGAGTAATAAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * *
8194 TTTTGAAGGAATGAGTGACAATAAATGGACTTTTCTTTCCAATGAATG-CCTTTCTCTTCACATT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
* * * * * *
8258 TTTTGAGGTAGACATTCAATTATAATCTGTTTTAACCAATAATGT--AAAA-TGAA--T----T-
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAATC
8313 --TTA--AGATTATAAAACCATTTAAAGCGAGTAATAAGGC
130 AATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
8350 TTTTAAAAGAATTG-GAGACTATAAATGGACTTTTTTTGCCCCTGAA--TATTTTTTCTTCACGT
1 TTTTGAAAGAA-TGAGTGACTATAAATGGACTTTTCTTG-CCATGAATGTCTTTTTTCTTCACGT
* * * * ** * * *
8412 TTCTTGAGATAGACAGTCAATTATAGTCTATTTTAAGTAAAAATGTAAAAACTTCAACTAAAAAT
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAAT
* * *
8477 CAATTATGAGATTATAAAACCATTTAAAACGAGTGACAAGGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * * * * *
8519 TTTTGAAGGAATGGGTAACTATAAATAGACCTTTCTTTGCAAATGAATG-CATTTTGCTTTATGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTC-TTGC-CATGAATGTCTTTTTTCTTCACGT
** * * * *
8583 TTCTCGAGGTA-AGCACCCAATTGTAGTATGTTTTAACCAAAAATATAAAAAAAATTTAAGTTAA
64 TTCTCGAGGTAGA-CATTCAATTATAGTCTGTTTTAACCAAAAATAT--AAAAAATTCAACTTAA
* * * * * *
8647 AATCAATTAAGAGCTTAAAAAACCATTTAAAGCGACTAACAAAGC
126 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * *
8692 CTTTGAAGGAATCAGTGACTATAGATGGACTTTTCTTGCCAATGAATGTCTTTTCTTCTT---GT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTT-TTCTTCACGT
* * * * *
8754 TTCTCTAGGTAGACAATCAATTATA-ACATGTTTTAACCAAAAATGTAAAAATATTTAACTTAAA
64 TTCTCGAGGTAGACATTCAATTATAGTC-TGTTTTAACCAAAAATATAAAAA-ATTCAACTTAAA
********** *
8818 ATCAATNNNNNNNNNNTAAAACCATTTAAAGCGAGTAATAAGAC
127 ATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
** * * * * * ** *
8862 TTTTGAAAGAATGAGAAACTA-ATATCGGACTTTTCTTTCGAATAAATAT-TTTTTTCAACATGT
1 TTTTGAAAGAATGAGTGACTATAAAT-GGACTTTTCTTGC-CATGAATGTCTTTTTTCTTCACGT
* * * ** * *
8925 TTC-AGAAG-ACAACCATTCAATTATAGTCTGTTTTAATGAAAAATGTAAAAAAATTTAACTTAA
64 TTCTCGAGGTA-GA-CATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAA
************* *
8988 AATCNNNNNNNNNNNNNTAAAACCATTTAAAGCGAGTAATAAGGA
126 AATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
9033 TTTTG-AAGAAATGGGTGACTATAAATAGACTTTTCTTACCAATGAATG-CCTTTTTCTTCCCGT
1 TTTTGAAAG-AATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGT
* * * * *
9096 TTCTCGAGGTAAACTTTCAACTATAATCTGTTTTAACCAAAAATATAAAAAAATTTAACTTAAAA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAA
* * * *
9161 GCAATTATAAGATTATAAAATCATTTAAAGCGAGTAACAAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* ** * * *
9204 TTTCT-AAAGAATGTGAAACTATAAATGGACTTTTCTTGCCAATGAATG-CCTTTATCTTCAGGT
1 TTT-TGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGT
* ** * *
9267 TTCTCAAGGTAGACATTCAACAATAGTCTGTTTTAACCAAAAATACAAAAAAAAAATTCAACATA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAAT----ATAAAAAATTCAACTTA
* * * * *
9332 AAATCAGTTATGTGATTACAAAATCATTTAAAGCAAGTAATAAGGC
125 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
9378 ATTTGAAAGAATGGGTTACTATAAATGGACTTTTCTTGCCAAT-ATATATC-TTTTTCTTCAGGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGA-ATGTCTTTTTTCTTCACGT
* * * * * * *
9441 TTTTTGATGTACACATTCAATTATAGTCTATTTTAACTAAAAATATAAAAAAAAAATACAACTTA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT----AAAAAATTCAACTTA
********** *
9506 AAATCAATTATGANNNNNNNNNNCCATTTACAGCGAGTAATAAGGC
125 AAATCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * ** * * *
9552 TTTTAAAAGGATCAGTGTGTATAAATAGACATTTCTTGCCAATGACA-ATC-TTTTTCTTCACGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGA-ATGTCTTTTTTCTTCACGT
* * * **********
9615 TTTTCGAGGTAGGCATTCAATTATAGTTTGTTTTAACCAAAAANNNNNNNNNNTCAACTTAAAAT
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAAT
* * * * *
9680 CAATTATGAGATTAAAAAACCGTTTAAAGTGTGTAATAAGGA
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * * * * *
9722 TTTTGCAGGAATGGGTGACTATAAATAGACTGTTT-TTGCTAATGAATATC--TTTTCTACATGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACT-TTTCTTGC-CATGAATGTCTTTTTTCTTCACGT
* ** * *
9784 TTCTCGAGGTAGACATTCAACTATAGTCTGTTTTAATAAAAAATACAAAAACATTTAACTTAAAA
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAA-ATTCAACTTAAAA
* * * *
9849 TCAATAATGAGATTAGAAAACCATTTAAAGCAATTAATAAGGC
128 TCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* *********************
9892 TTTTGAAAGAATGGGTGACTATAAATGGACTTTTCTTGCCAAT-NNNNNNNNNNNNNNNNNNNNN
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTTTTTTCTTCACGTT
*** * * * *
9956 NNNCGAGGTAGGCATTCAATTATAGTCTGTTTTAACCAAAAATGTAAAAAAATTCAAATTAATAT
65 TCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATAT-AAAAAATTCAACTTAAAAT
* * * * *
10021 TAATTATGATATTATAAAACCGTTTAAAGCGAGTAAAAATGC
129 CAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
* * * * *
10063 TTTTGAAAGAATGAGTGACAATAAATGTAATTTTCTTACCAATGAAT-T-TTCTTTTCTTCATGT
1 TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCC-ATGAATGTCTT-TTTTCTTCACGT
* * * * *
10126 TTTTCGAGATAAACATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAAAAT
64 TTCTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAAT
10179 CAANNNNNNN
Statistics
Matches: 5208, Mismatches: 1344, Indels: 427
0.75 0.19 0.06
Matches are distributed among these distances:
155 49 0.01
156 66 0.01
157 7 0.00
158 6 0.00
164 1 0.00
165 1 0.00
167 10 0.00
168 134 0.03
169 467 0.09
170 1256 0.24
171 1903 0.37
172 910 0.17
173 118 0.02
174 276 0.05
175 4 0.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
TTTTGAAAGAATGAGTGACTATAAATGGACTTTTCTTGCCATGAATGTCTTTTTTCTTCACGTTT
CTCGAGGTAGACATTCAATTATAGTCTGTTTTAACCAAAAATATAAAAAATTCAACTTAAAATCA
ATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGGC
Found at i:8374 original size:156 final size:155
Alignment explanation
Indices: 8160--8461 Score: 392
Period size: 156 Copynumber: 1.9 Consensus size: 155
8150 ACCAATTATG
* * * *
8160 AGATTATAAAACCATTTAAAGTGAGTAATAAGGCTTTTGAAGGAATGAGTGACAATAAATGGACT
1 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAAGAATGAGAGACAATAAATGGACT
* * * * *
8225 TTTCTTT-CCAATGAATGCCTTTCTCTTCACATTTTTTGAGGTAGACATTCAATTATAATCTGTT
66 TTT-TTTGCCAATGAAT-ACTTTCTCTTCACATTTCTTGAGATAGACAGTCAATTATAATCTATT
*
8289 TTAACCAATAATGTAAAATGAATTTTA
129 TTAACCAAAAATGTAAAATGAATTTTA
*
8316 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAAGAATTG-GAGACTATAAATGGAC
1 AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAAGAA-TGAGAGACAATAAATGGAC
** * * * *
8380 TTTTTTTGCCCCTGAATATTTTTTCTTCACGTTTCTTGAGATAGACAGTCAATTATAGTCTATTT
65 TTTTTTTGCCAATGAATACTTTCTCTTCACATTTCTTGAGATAGACAGTCAATTATAATCTATTT
**
8445 TAAGTAAAAATGTAAAA
130 TAACCAAAAATGTAAAA
8462 ACTTCAACTA
Statistics
Matches: 125, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
155 56 0.45
156 67 0.54
157 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (155 bp):
AGATTATAAAACCATTTAAAGCGAGTAATAAGGCTTTTAAAAGAATGAGAGACAATAAATGGACT
TTTTTTGCCAATGAATACTTTCTCTTCACATTTCTTGAGATAGACAGTCAATTATAATCTATTTT
AACCAAAAATGTAAAATGAATTTTA
Found at i:11504 original size:342 final size:331
Alignment explanation
Indices: 10914--11547 Score: 666
Period size: 342 Copynumber: 1.9 Consensus size: 331
10904 TAACAAAACT
* * *
10914 ATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGTCAATAAATGAACTTTTCTTACTAATG
1 ATTTAAAGCGAGTAATAAGGCTTTTAAAAGAATGGGTGACAATAAATGAACTTTTCTTACTAATG
**
10979 AATACCTTTTTCTTCATGTTTCTCAACATAGACATTCAATTATAATCTGTTTTAGCCAAACAAGT
66 AATACCTTTTTCCACATGTTTCTCAACATAGACATTCAATTATAATCTGTTTTAGCCAAACAAGT
* * * *
11044 AAAAAAAATTGAACTGAAAGTCAATTTTGAGATTATAAAACTATTTAAATCGAGTAATAAGGGTT
131 AAAAAAAATTGAACTGAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* *
11109 CTGAAGGAATGAAAGACTACAAATGAACTTTTCTTGTCAATGAATTTTTTTTCTTCACGTTTCTT
196 CTAAAGGAATGAAAGACTACAAATGAACTTTTCTTGTCAATGAATTCTTTTTCTTCACGTTTCTT
* *
11174 GAGGTAAACATTTAATTATAGTATGTTTTAACAAAAAATANNNNNNNNNNAACTTAAAATCAATT
261 GAGGTAAACATTCAATTATAATATGTTTTAACAAAAAATA----------AACTTAAAATCAATT
11239 ATGGGATTATAAAATC
316 ATGGGATTATAAAATC
* * ** *
11255 ATTTAAAGTGGGTAATAAGGCTATTTAAAAGAATGGGTGAGTATAAAT-AGACTTTTCTTGCTAA
1 ATTTAAAGCGAGTAATAAGGCT-TTTAAAAGAATGGGTGACAATAAATGA-ACTTTTCTTACTAA
* ** ** * *
11319 TGAATATCTTTTTCCACATGTTTCTTGAGGTAGACATTCAATTATAGTCTGTTTTATCCAAA-AA
64 TGAATACCTTTTTCCACATGTTTCTCAACATAGACATTCAATTATAATCTGTTTTAGCCAAACAA
* * **********
11383 -TATAAACAAATAT-AACTTAAAATCAATTATGAGATTATNNNNNNNNNNAAAGCGAGTAATAAG
129 GTA-AAAAAAAT-TGAACTGAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAG
* * * * * * * *
11446 GCTTTTAAAGGAATGGATGA-TAATAAATGGATTTTTTTTTTCAATGAATGTCTTTTTCTTCACG
192 GCTTCTAAAGGAATGAAAGACT-ACAAATGAACTTTTCTTGTCAATGAAT-TCTTTTTCTTCACG
* *
11510 TTTTTTGAGGTAGACATTCAATTATAATATGTTTTAAC
255 TTTCTTGAGGTAAACATTCAATTATAATATGTTTTAAC
11548 CAATAACATA
Statistics
Matches: 240, Mismatches: 47, Indels: 11
0.81 0.16 0.04
Matches are distributed among these distances:
340 3 0.01
341 103 0.43
342 134 0.56
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.36
Consensus pattern (331 bp):
ATTTAAAGCGAGTAATAAGGCTTTTAAAAGAATGGGTGACAATAAATGAACTTTTCTTACTAATG
AATACCTTTTTCCACATGTTTCTCAACATAGACATTCAATTATAATCTGTTTTAGCCAAACAAGT
AAAAAAAATTGAACTGAAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
CTAAAGGAATGAAAGACTACAAATGAACTTTTCTTGTCAATGAATTCTTTTTCTTCACGTTTCTT
GAGGTAAACATTCAATTATAATATGTTTTAACAAAAAATAAACTTAAAATCAATTATGGGATTAT
AAAATC
Found at i:11839 original size:132 final size:132
Alignment explanation
Indices: 11592--11848 Score: 295
Period size: 132 Copynumber: 1.9 Consensus size: 132
11582 TAAAAGATTT
* * *
11592 TGAGTTTATAAGACCATTTAAAGCGAGTAATAAGGCTTTTAAAAAAATAAGAGACTATAAATGAA
1 TGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTTTAAAAAAATAAGAGACTATAAATGAA
* * * * * * *
11657 TTTTCCCTGCCCATGAATACTTTTTCTTTTACGTTTCTTGAGGTACACATTCAATTATAATCAAT
66 TTTTCCCTACCAATGAATACTTTTTCATCTACGTTTCTTAAGGTAAACATTAAATTATAATCAAT
11722 TA
131 TA
* * * * * *
11724 TGAGATTATAAAATCATTTAAGGTGACTAATAAGGCTTTTGAAAGAATAAGTA-ATTATAAATGG
1 TGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTTTAAAAAAATAAG-AGACTATAAAT-G
* * *
11788 ACTTTT-CTTACCAATGAATGCCTTTTTCATCT-CGTTTCTTAAGGTAAACATTAAATTATAA
64 AATTTTCCCTACCAATGAAT-ACTTTTTCATCTACGTTTCTTAAGGTAAACATTAAATTATAA
11849 ACTGTTTTGA
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
132 87 0.84
133 16 0.16
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.37
Consensus pattern (132 bp):
TGAGATTATAAAACCATTTAAAGCGACTAATAAGGCTTTTAAAAAAATAAGAGACTATAAATGAA
TTTTCCCTACCAATGAATACTTTTTCATCTACGTTTCTTAAGGTAAACATTAAATTATAATCAAT
TA
Found at i:12529 original size:173 final size:169
Alignment explanation
Indices: 11705--12576 Score: 640
Period size: 173 Copynumber: 5.1 Consensus size: 169
11695 TGAGGTACAC
* * * *
11705 ATTCAA-TTATAATCAATTATGAGATTATAAAATCATTTAAGGTGACTAATAAGGCTTTTGAAAG
1 ATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAAG
** * * * * * *
11769 AATAAGTAATTATAAATGGACTTTTCTTACCAATGAATGCCTTTTTCATCTC-G-TTTCTTAAGG
66 AATGGGTGACTATAAATAGACTTTTCTTGCCAATGAAT-ACTTTTTC-T-TCAGTTTTC-CAAGG
* ** * *
11832 TAA-ACATTAAATTATAAACTGTTTTGACAATAAATGT-AAAACA
127 -AAGACATTCAATTATAGTCTGTTTTAACAA-AAATGTAAAAAAA
* * ** ********** *
11875 ATTCAACTGAAAATCAATTATGACATTATAAAA-CTATTTAAAGTAAGTAATNNNNNNNNNNAAG
1 ATTCAACTTAAAATCAATTATGAGATTATAAAATC-ATTTAAAGCGAGTAATAAGGCTTTTGAAA
* * * * * * ** **
11939 GAATGAGAGACTATAAATGGACTTTTCTTTCAAATAAATTTTTTTTCCAACA-TGTTTCCTAAGG
65 GAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTT-CTTCAGT-TTTCC-AAGG
* * *
12003 CAAG-CATTCAATTATAGTCTGTTTCAACAAAAA-ATATAAAAA
127 -AAGACATTCAATTATAGTCTGTTTTAACAAAAATGTAAAAAAA
* * * *
12045 ATTCAAATTAAAATCTATTATGACATTATAAAATCATTTAAAGCGAGTAATAAGGAC-TTTGAAG
1 ATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGG-CTTTTGAAA
* * * *
12109 GAATGGGTGACTATAAATGGACTTTTCTTGTCAGTGAATGACTTTTTCTTCA-TGTTTCTC-ACG
65 GAATGGGTGACTATAAATAGACTTTTCTTGCCAATGAAT-ACTTTTTCTTCAGT-TTTC-CAAGG
* * * * *
12172 ATAGACATTCAACTATAATCTATTTTAACAAAAAAATGCAAAACAA
127 A-AGACATTCAATTATAGTCTGTTTTAAC--AAAAATGTAAAAAAA
********** * *
12218 ATTCAACTTAAAATCAATTATGAGATTANNNNNNNNNNTAAAGTGAGTAATGAGGCTTTTGAAAG
1 ATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAAG
* * * ** *
12283 AATGGGTGACTATAAATTGACTTTTCTTGCCAATGGATGTCTTTTTCTTCTAGTTTTTGAAGGTA
66 AATGGGTGACTATAAATAGACTTTTCTTGCCAATGAAT-ACTTTTTCTTC-AGTTTTCCAAGGAA
*
12348 GACATTCAATTATAGTCTTTTTTTAACTAAAAATGTAAAAAAA
129 GACATTCAATTATAGTC-TGTTTTAAC-AAAAATGTAAAAAAA
* * * *
12391 ATACAACTTAAAATCAAATATGAGATTATAAAATTATTTACAGCGAGTAATAAGGCTTTTGAAAG
1 ATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAAG
* * *
12456 AATGAGTGAGTGTAAATAGACTTTTCTTGCCAATGAATACCTTTTTCTTCACGTTTTCCAAGGCA
66 AATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATA-CTTTTTCTTCA-GTTTTCCAAGG-A
12521 AG-CATTCAATTATAGTCTGTTTTAACCAAAAATGT--AAAAA
128 AGACATTCAATTATAGTCTGTTTTAA-CAAAAATGTAAAAAAA
*
12561 ATTCAACATAAAATCA
1 ATTCAACTTAAAATCA
12577 NNNNNNNNNN
Statistics
Matches: 545, Mismatches: 130, Indels: 54
0.75 0.18 0.07
Matches are distributed among these distances:
168 1 0.00
169 6 0.01
170 146 0.27
171 109 0.20
172 22 0.04
173 244 0.45
174 16 0.03
175 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (169 bp):
ATTCAACTTAAAATCAATTATGAGATTATAAAATCATTTAAAGCGAGTAATAAGGCTTTTGAAAG
AATGGGTGACTATAAATAGACTTTTCTTGCCAATGAATACTTTTTCTTCAGTTTTCCAAGGAAGA
CATTCAATTATAGTCTGTTTTAACAAAAATGTAAAAAAA
Found at i:13777 original size:169 final size:168
Alignment explanation
Indices: 13490--13871 Score: 418
Period size: 169 Copynumber: 2.3 Consensus size: 168
13480 NNNAAAGTGC
* *
13490 GTAATAAGGCTTTTGAAAGAAT-GAGTGACTATAAATGGAC-TTTTCTTACCCATGAATAATTTT
1 GTAATAAGGCTTTTGAAAGAATGGA-TGACTATAAATGGACTTTTTCTTA--CATAAATAATATT
* * **
13553 TTTTAACGTTTCTCGAAGTAGACTTTCAATTATAGTCTGTTTAACTATAAATGTAAAAACATTTG
63 TTCTAACGTTTCTCGAAGTAGACTTTCAATTATAGTCTATTTAACTATAAATGTAAAAACATTCA
* * * **
13618 ACTTAAAATGAATTATGAGATTATAAAA-CTATTTAAAGCGG
128 ACTTAAAATCAATTATGAGATAACAAAATC-ATTTAAAGCAA
* * **
13659 GTAATAATGCTTTTGAAAGAATGGATGACTATAAATGGACTTTTTTTTA-ATAAATGGTATTTTC
1 GTAATAAGGCTTTTGAAAGAATGGATGACTATAAATGGACTTTTTCTTACATAAATAATATTTTC
* * *
13723 TACACGTTTCTCGACGTAGA-TATTGAATTATAGTCTAATTTAACTA-ACAATGTAAAAATATTC
66 TA-ACGTTTCTCGAAGTAGACT-TTCAATTATAGTCT-ATTTAACTATA-AATGTAAAAACATTC
* *
13786 AACTTATAATCAATTATGTGATAACAAAATCATTTAAAGCAA
127 AACTTAAAATCAATTATGAGATAACAAAATCATTTAAAGCAA
* * * *
13828 GTAATAAGGCTTTTG-AAGTAATGGGTGTCAATCAATGGACTTTT
1 GTAATAAGGCTTTTGAAAG-AATGGATGACTATAAATGGACTTTT
13872 CTTGCTAATG
Statistics
Matches: 180, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
167 13 0.07
168 33 0.18
169 124 0.69
170 10 0.06
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (168 bp):
GTAATAAGGCTTTTGAAAGAATGGATGACTATAAATGGACTTTTTCTTACATAAATAATATTTTC
TAACGTTTCTCGAAGTAGACTTTCAATTATAGTCTATTTAACTATAAATGTAAAAACATTCAACT
TAAAATCAATTATGAGATAACAAAATCATTTAAAGCAA
Found at i:14007 original size:172 final size:159
Alignment explanation
Indices: 13817--14145 Score: 363
Period size: 172 Copynumber: 2.0 Consensus size: 159
13807 TAACAAAATC
* *
13817 ATTTAAAGCAAGTAATAAGGCTTTTGAAGTAATGGGTG-TCAATCAATGGACTTTTCTTGCTAAT
1 ATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGAT-AATCAATGGACTTTTCTTACTAAT
* * * *
13881 GAATACCTTTTTCTTCACGTTTCTCAACATAGACATTTAATTATAATCTGTTTTAGCCAAACAAG
65 GAATACATTTTTCTTCACGTTTCTCAACATAGACATTCAATTATAA--TGTTTTAACCAAA-AAC
13946 TAAAAAAAATTGAACTTAAAATCAATTTTGNNNNNNNNNNACT
127 TAAAAAAAATTGAACTTAAAATCAATTTTG----------ACT
* * * *
13989 ATTTAAATCGAGTAATAAGGCTTTTGAAGGAATGTGTGATAATTAATGGACTTTTCTTACTAATG
1 ATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGATAATCAATGGACTTTTCTTACTAATG
* * * * ** *
14054 AATGCATTTTTCTTCATGTTTTTTAATGTAGACATTCAGTTATAATGTTTTAACCAAAAACTAAA
66 AATACATTTTTCTTCACGTTTCTCAACATAGACATTCAATTATAATGTTTTAACCAAAAACTAAA
*
14119 AGAAATTGAACTTAAAATCAATTTTGA
131 AAAAATTGAACTTAAAATCAATTTTGA
14146 GATTATAAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 15
0.81 0.11 0.09
Matches are distributed among these distances:
159 1 0.01
169 31 0.22
170 12 0.09
172 93 0.67
173 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.37
Consensus pattern (159 bp):
ATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATGGGTGATAATCAATGGACTTTTCTTACTAATG
AATACATTTTTCTTCACGTTTCTCAACATAGACATTCAATTATAATGTTTTAACCAAAAACTAAA
AAAAATTGAACTTAAAATCAATTTTGACT
Found at i:14052 original size:21 final size:21
Alignment explanation
Indices: 14028--14067 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14018 GAATGTGTGA
* *
14028 TAATTAATGGACTTTTCTTAC
1 TAATGAATGCACTTTTCTTAC
*
14049 TAATGAATGCATTTTTCTT
1 TAATGAATGCACTTTTCTT
14068 CATGTTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.50
Consensus pattern (21 bp):
TAATGAATGCACTTTTCTTAC
Found at i:16294 original size:170 final size:170
Alignment explanation
Indices: 16007--17230 Score: 650
Period size: 170 Copynumber: 7.2 Consensus size: 170
15997 NNNNNNNNNN
* * ** * * * *
16007 TAAAGCGACTAATAAGGCTTTTGAAAGAATGGGTGACTATAAATAGACTTTTCTCGCCAATAAAT
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
* * * * *
16072 -ATCTTTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAGTCTGTTTTAACTAAACATATAA
66 GCT-TTTTTCTTTATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAATATAA
**
16136 AAAATTCAACTTAAAATCAATTATGAGATTATAAAATCGGT
130 AAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
*
16177 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGATTTTTCTTGCCCATGAAT
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
* * * * *
16242 GCTTTTTTCTTTATGTTTCTTGGGGTAAACT-TTCGATTATAGTCTTTTTTAACCAAAAATGTAA
66 GCTTTTTTCTTTATGTTTCTTGAGGTAGA-TATTCAATTATAGTCTGTTTTAACCAAAAATATAA
********
16306 AAAATTCAACTTANNNNNNNNNNTAT--GATTATAAAATCATT
130 AAAATTCAACTTA--AAATCAATTATGAGATTATAAAATCATT
* * * ** * * *
16347 TAAAGTGAGTAATAAGGTTTTTCCAAGAATAAGTGACTATAAATGAACTTTTCGTGGCCATGAAT
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
* * *
16412 GCTTTTTT-TTTCATGTTTCTTAAGGTAGATATTCAATTTTATTCTGTTTTAACCAAAAATATAA
66 GCTTTTTTCTTT-ATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* * * *
16476 AAATTTTAATTTAAAATCAATTATGAGATTATAAAACCATT
130 AAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
* * * ** * *
16517 TGAAGCAAGTAATAATA-CTTTTGAAGGAATGCGTGACTATAAATTGGACTTTTC-TGCTCAATA
1 TAAAGCGAGTAATAA-AGCTTTTGAAAGAATAAGTGACTATAAA-TGGACTTTTCTTGC-CCATG
* * ** * *
16580 AATGGC-ATTTTCTATACATTT-TTCGAGGTAGATATTCAATTTTAGTCTATTTTAACCAAAAAG
63 AAT-GCTTTTTTCTTTATGTTTCTT-GAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAA-
* * * * * *
16643 TGTAAACAAATTTAACTTATAATCAATTACGAGATTACAAAACCATT
125 TATAAA-AAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
********** * * ** * * ** * ** *
16690 TAAANNNNNNNNNNAGGCTTTTGAAGGAATGGGTCACAATAAATAAACTTTTCTTACTAATGAGT
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
* * ** * * * * * * *
16755 G-TCTTTTTCTTCACGTTTCTCAATGCAGACACTCAATTATAATTTGTTTTAGCCAAACAAGTA-
66 GCT-TTTTTCTTTATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAA-AA-TAT
* * * * * *
16818 AAAAAATTGACCTTAAAATCAATTTTGAGATTGTGAAACCATT
128 AAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
* * * * * * ** ** *
16861 TAAAGTGAATAATAAGGTTTTTGAAGGAATGCA-TGA-TAATAAATAAACTTTTCTTGCTAATAA
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAAT-AAGTGACT-ATAAATGGACTTTTCTTGCCCATGA
** * * * * *
16924 ATG-TATTTTTCTTTATGTTTCTCAATGTAGAGATTCAGTTATAATTTGTTTTAA-CAAGAAAGT
64 ATGCT-TTTTTCTTTATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAA-AAA-T
* * ********** *
16987 AAAAAAAATTGAACTTAAAATNNNNNNNNNNATTATAAAACCATT
126 ATAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
* * * * * * ** *
17032 TAAATCGAGTAATAATGCTTTTGAAGGAATGAGAGATTATAAATGGAAATTTCTTGCCAATGAAT
1 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
* * * * ********** * *
17097 G-TCTTTTTCTTCAGGTTTCTCGAGGTAGACATTCAATNNNNNNNNNNTTTAACTAAAAATGTAA
66 GCT-TTTTTCTTTATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAATATAA
* *
17161 AAAAAT-AACTTAAAATCAATTATGAG-TATATAAAATCTTT
130 AAAATTCAACTTAAAATCAATTATGAGAT-TATAAAATCATT
* *
17201 TACAA-TGAGTAATAAGGCTTTTGAAAGAAT
1 TA-AAGCGAGTAATAAAGCTTTTGAAAGAAT
17231 GAATAAGTGT
Statistics
Matches: 805, Mismatches: 218, Indels: 63
0.74 0.20 0.06
Matches are distributed among these distances:
168 4 0.00
169 48 0.06
170 317 0.39
171 299 0.37
172 68 0.08
173 69 0.09
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.36
Consensus pattern (170 bp):
TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACTATAAATGGACTTTTCTTGCCCATGAAT
GCTTTTTTCTTTATGTTTCTTGAGGTAGATATTCAATTATAGTCTGTTTTAACCAAAAATATAAA
AAATTCAACTTAAAATCAATTATGAGATTATAAAATCATT
Found at i:17056 original size:171 final size:170
Alignment explanation
Indices: 16007--17133 Score: 460
Period size: 171 Copynumber: 6.6 Consensus size: 170
15997 NNNNNNNNNN
* * * * * * * *
16007 TAAAGCGACTAATAAGGCTTTTGAAAGAATGGGTGACT-ATAAATAGACTTTTCTCGCCAATAAA
1 TAAAGTGAATAATAAGGCTTTTGAAGGAAT-GATGA-TAATAAATAAACTTTTCTTGCTAATGAA
* * * * * * *
16071 TATCTTTTTCTTCATGTTTCTCGAGGTAGATATTCAATTATAGTCTGTTTTA-ACTAAAC-A-TA
64 TGTCTTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAGAC-AAACAAGTA
* * * **
16133 TAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAATCGGT
128 -AAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* * * * * ** * **
16177 TAAAGCGAGTAATAAAGCTTTTGAAAGAATAAGTGACT-ATAAATGGATTTTTCTTGCCCATGAA
1 TAAAGTGAATAATAAGGCTTTTGAAGGAATGA-TGA-TAATAAATAAACTTTTCTTGCTAATGAA
* * **** * * * *
16241 TG-CTTTTTTCTTTATGTTTCTTGGGGTAAACTTTCGATTATAGTCTT-TTTTA-ACCAAA-AAT
64 TGTC-TTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAAT-TTGTTTTAGA-CAAACAA-
* ********** *
16302 GT-AAAAAATTCAACTTANNNNNNNNNNT-ATGATTATAAAATCATT
125 GTAAAAAAATTGAACTTAAAATCAATTTTGA-GATTATAAAACCATT
* * * * * * *
16347 TAAAGTGAGTAATAAGGTTTTTCCAA-GAATAAGTGACT-ATAAATGAACTTTTCGTGGC-CATG
1 TAAAGTGAATAATAAGGCTTTT-GAAGGAATGA-TGA-TAATAAATAAACTTTTC-TTGCTAATG
* * * * * *
16409 AATG-CTTTTTTTTTCATGTTTCTTAAGGTAGATATTCAATT-TTATTCTGTTTTA-ACCAAA-A
62 AATGTC-TTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATT-TGTTTTAGA-CAAACA
* * * *
16470 A-TATAAAAATTTTAATTTAAAATCAATTATGAGATTATAAAACCATT
124 AGTA-AAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* * ** * **
16517 TGAAG-CAAGTAATAATACTTTTGAAGGAATGCGTGACT-ATAAATTGGACTTTTC-TGCTCAAT
1 TAAAGTGAA-TAATAAGGCTTTTGAAGGAATG-ATGA-TAATAAA-TAAACTTTTCTTGCT-AAT
* * * * * * * * * * * *
16579 AAATGGCATTTTCTAT-ACATTTTTCGAGGTAGATATTCAATTTTAGTCTATTTTA-ACCAAA-A
61 GAATGTCTTTTTCT-TCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAGA-CAAACA
* * * ** *
16641 AGTGTAAACAAATTTAACTTATAATCAATTACGAGATTACAAAACCATT
124 A--GTAAAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
********** * * * * *
16690 TAAANNNNNNNNNNAGGCTTTTGAAGGAATGGGTCACAATAAATAAACTTTTCTTACTAATGAGT
1 TAAAGTGAATAATAAGGCTTTTGAAGGAAT-GATGATAATAAATAAACTTTTCTTGCTAATGAAT
* * *
16755 GTCTTTTTCTTCACGTTTCTCAATGCAGACACTCAATTATAATTTGTTTTAGCCAAACAAGTAAA
65 GTCTTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAGACAAACAAGTAAA
* * *
16820 AAAATTGACCTTAAAATCAATTTTGAGATTGTGAAACCATT
130 AAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* *
16861 TAAAGTGAATAATAAGGTTTTTGAAGGAATGCATGATAATAAATAAACTTTTCTTGCTAATAAAT
1 TAAAGTGAATAATAAGGCTTTTGAAGGAATG-ATGATAATAAATAAACTTTTCTTGCTAATGAAT
* * * * *
16926 GTATTTTTCTTTATGTTTCTCAATGTAGAGATTCAGTTATAATTTGTTTTA-ACAAGA-AAGTAA
65 GTCTTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAGACAA-ACAAGT-A
**********
16989 AAAAAATTGAACTTAAAATNNNNNNNNNNATTATAAAACCATT
128 AAAAAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
* * * * *
17032 TAAA-TCGAGTAATAATGCTTTTGAAGGAATGAGAGATTATAAATGGAAA--TTTCTTGCCAATG
1 TAAAGT-GAATAATAAGGCTTTTGAAGGAATGA-TGATAATAAAT--AAACTTTTCTTGCTAATG
* * *
17094 AATGTCTTTTTCTTCAGGTTTCTCGAGGTAGACATTCAAT
62 AATGTCTTTTTCTTCACGTTTCTCAATGTAGACATTCAAT
17134 NNNNNNNNNN
Statistics
Matches: 731, Mismatches: 185, Indels: 81
0.73 0.19 0.08
Matches are distributed among these distances:
168 2 0.00
169 10 0.01
170 286 0.39
171 302 0.41
172 58 0.08
173 70 0.10
174 3 0.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.37
Consensus pattern (170 bp):
TAAAGTGAATAATAAGGCTTTTGAAGGAATGATGATAATAAATAAACTTTTCTTGCTAATGAATG
TCTTTTTCTTCACGTTTCTCAATGTAGACATTCAATTATAATTTGTTTTAGACAAACAAGTAAAA
AAATTGAACTTAAAATCAATTTTGAGATTATAAAACCATT
Done.