Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399243.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2512.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5212
ACGTcount: A:0.21, C:0.07, G:0.08, T:0.21

Warning! 2277 characters in sequence are not A, C, G, or T


Found at i:362 original size:169 final size:159

Alignment explanation


    Indices: 37--364  Score: 320
    Period size: 169  Copynumber: 2.0  Consensus size: 159

         27 TGCTTCTTAA

                              *                             *          *     
         37 GGCAGACATTCAATTATATTCTGTTTTAAGGAAAAATGTAAAAAAAATGAAATTAAAATTAATTA
          1 GGCAGACATTCAATTATAGTCTGTTTTAAGGAAAAATGTAAAAAAAATCAAATTAAAATCAATTA

                                                                 *           
        102 TGAGATTATAAAACCATTTAGAACAAGTAAAAAAGTTGCTGAAGGAATGGAAGGCTATAAATAGA
         66 TGAGATTATAAAACCATTTAGAACAAGTAAAAAAGTTGCTGAAGGAATGGAAGACTATAAATAGA

                     *  *     **         
        167 CTTTTCTTATCAGTGAATGCTTTTTCTTC
        131 CTTTTCTTACCAATGAATAATTTTTCTTC

                                                    *                *    *  
        196 NNNNNNNNNNNGGCAGACATTCAATTATAGTCTGTTTTAATGAAAAATGT-AAAAAATTCAACTT
          1 -----------GGCAGACATTCAATTATAGTCTGTTTTAAGGAAAAATGTAAAAAAAATCAAATT

             *                       *        *     * *  *    *            **
        260 ATAATCAATTATGAGATTATAAAACTATTTA-AATAGAGTCATAAGGCTTTC-GAAGGAATGGCT
         55 AAAATCAATTATGAGATTATAAAACCATTTAGAACA-AGTAAAAAAG-TTGCTGAAGGAATGGAA

                      *          *                    
        323 GACTATAAATGGACTTTTCTTGCCAATGAATAATTTTTCTTC
        118 GACTATAAATAGACTTTTCTTACCAATGAATAATTTTTCTTC

        365 ATGTTTCTCA


Statistics
Matches: 134,  Mismatches: 22, Indels: 5
        0.83            0.14        0.03

Matches are distributed among these distances:
 168    3  0.02
 169   91  0.68
 170   40  0.30

ACGTcount: A:0.39, C:0.10, G:0.15, T:0.33


Consensus pattern (159 bp):   
GGCAGACATTCAATTATAGTCTGTTTTAAGGAAAAATGTAAAAAAAATCAAATTAAAATCAATTA
TGAGATTATAAAACCATTTAGAACAAGTAAAAAAGTTGCTGAAGGAATGGAAGACTATAAATAGA
CTTTTCTTACCAATGAATAATTTTTCTTC
Done.