Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14367614
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 51264 characters in sequence are not A, C, G, or T
File 13 of 31
Found at i:6605565 original size:87 final size:87
Alignment explanation
Indices: 6605419--6605592 Score: 303
Period size: 87 Copynumber: 2.0 Consensus size: 87
6605409 TGAGTAGATG
* *
6605419 AATCATCTTCGTTGGTGAATTTTGTACTTGTGCATATAATAGAATTTAAATAATAAAGTACAAGA
1 AATCATCTTCGTTGGTGAATTTTGCACTTGTGCATATAATACAATTTAAATAATAAAGTACAAGA
6605484 CATAGAACTACAAGGACACTGC
66 CATAGAACTACAAGGACACTGC
* *
6605506 AATCATCTTCTTTGGTGAATTTTGCACTTGTGCATATAATACAATTTAAATAATAAAGTACTAGA
1 AATCATCTTCGTTGGTGAATTTTGCACTTGTGCATATAATACAATTTAAATAATAAAGTACAAGA
*
6605571 CATAGAACTACAGGGACACTGC
66 CATAGAACTACAAGGACACTGC
6605593 TAGTCTCCTT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.32
Consensus pattern (87 bp):
AATCATCTTCGTTGGTGAATTTTGCACTTGTGCATATAATACAATTTAAATAATAAAGTACAAGA
CATAGAACTACAAGGACACTGC
Found at i:6616387 original size:43 final size:38
Alignment explanation
Indices: 6616303--6616398 Score: 111
Period size: 38 Copynumber: 2.4 Consensus size: 38
6616293 ACCAGCATAT
* * *
6616303 AGAAAATAGGTACATAATCCATCCAATAAAACAACAAA
1 AGAAAATAGGTATATAATCCATCCAATAAAAAAAAAAA
*
6616341 AGAAAATAGGTATATAATCTATCCAATAGAAAAAAAAAGGGAA
1 AGAAAATAGGTATATAATCCATCCAAT--AAAAAAAAA---AA
6616384 AGAAAATAGGTATAT
1 AGAAAATAGGTATAT
6616399 GCATACACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 25 0.51
40 7 0.14
43 17 0.35
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.19
Consensus pattern (38 bp):
AGAAAATAGGTATATAATCCATCCAATAAAAAAAAAAA
Found at i:6628411 original size:21 final size:20
Alignment explanation
Indices: 6628385--6628423 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
6628375 TTAGTTATTA
6628385 TATATT-TTAATATAAATTAAT
1 TATATTATT-ATA-AAATTAAT
6628406 TATATTATTATAAAATTA
1 TATATTATTATAAAATTA
6628424 TGAGACCTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATATTATTATAAAATTAAT
Found at i:6643394 original size:17 final size:17
Alignment explanation
Indices: 6643372--6643406 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
6643362 TCTCAAACAC
6643372 CTCAACATGTTCATCGT
1 CTCAACATGTTCATCGT
6643389 CTCAACATGTTCATCGT
1 CTCAACATGTTCATCGT
6643406 C
1 C
6643407 AGTAAGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.31, G:0.11, T:0.34
Consensus pattern (17 bp):
CTCAACATGTTCATCGT
Found at i:6650478 original size:20 final size:20
Alignment explanation
Indices: 6650433--6650478 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
6650423 TTCAACATTC
*
6650433 AATTAA-TAATTTTTGTAAT
1 AATTAATTAATTTTTGTAAG
6650452 AATTAATTAATTTTT-TAAG
1 AATTAATTAATTTTTGTAAG
6650471 AATATAAT
1 AAT-TAAT
6650479 CACATGACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (20 bp):
AATTAATTAATTTTTGTAAG
Found at i:6656277 original size:2 final size:2
Alignment explanation
Indices: 6656270--6656309 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
6656260 AATAATAATA
* *
6656270 AT AT AT AT AT AC AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6656310 CAGTCTTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6660901 original size:2 final size:2
Alignment explanation
Indices: 6660894--6660921 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6660884 GCACATAATA
6660894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6660922 CAGTCTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6663611 original size:66 final size:66
Alignment explanation
Indices: 6663502--6663633 Score: 210
Period size: 66 Copynumber: 2.0 Consensus size: 66
6663492 TAGGTATTCT
* *
6663502 AAGTTTAAGTTTTGATGCACATATCTTTACCCTAAAAAAAATTACTTGTAGATCATCATAATAAT
1 AAGTTTAAGTTTTGATGCACATATCCTTACACTAAAAAAAATTACTTGTAGATCATCATAATAAT
6663567 C
66 C
* * * *
6663568 AAGTTTAAGTTTTGATGCACATTTCCTTGCACTAAAAACAATTACTTGTAGATCATGATAATAAT
1 AAGTTTAAGTTTTGATGCACATATCCTTACACTAAAAAAAATTACTTGTAGATCATCATAATAAT
6663633 C
66 C
6663634 TATATAGAAC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (66 bp):
AAGTTTAAGTTTTGATGCACATATCCTTACACTAAAAAAAATTACTTGTAGATCATCATAATAAT
C
Found at i:6666574 original size:18 final size:19
Alignment explanation
Indices: 6666541--6666576 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
6666531 TGCTTGCAGC
6666541 AGATGAAAGCTTGCTTCTT
1 AGATGAAAGCTTGCTTCTT
*
6666560 AGATGTAAG-TTGCTTCT
1 AGATGAAAGCTTGCTTCT
6666577 ACATATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (19 bp):
AGATGAAAGCTTGCTTCTT
Found at i:6667344 original size:2 final size:2
Alignment explanation
Indices: 6667337--6667370 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6667327 ATCACCTTTC
6667337 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6667371 GTACACACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6684410 original size:21 final size:21
Alignment explanation
Indices: 6684369--6684412 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
6684359 GTTGTCTATC
*
6684369 CTGATCAAAGGAAAAACCATT
1 CTGATCAAAGAAAAAACCATT
*
6684390 CTGATC-AAGAAAAGAATCATT
1 CTGATCAAAGAAAA-AACCATT
6684411 CT
1 CT
6684413 TCTGATTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (21 bp):
CTGATCAAAGAAAAAACCATT
Found at i:6695770 original size:15 final size:15
Alignment explanation
Indices: 6695731--6695778 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
6695721 AATCAGAAAA
**
6695731 TGAATTGAAAATTTT
1 TGAATTGAAGTTTTT
6695746 TGAATTGAAGTTTTT
1 TGAATTGAAGTTTTT
6695761 TGAATTGAAGTTTTT
1 TGAATTGAAGTTTTT
6695776 TGA
1 TGA
6695779 TTAATTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (15 bp):
TGAATTGAAGTTTTT
Found at i:6699228 original size:244 final size:242
Alignment explanation
Indices: 6698790--6699272 Score: 675
Period size: 244 Copynumber: 2.0 Consensus size: 242
6698780 ATGGTGAGCA
* * * *
6698790 GAGAATATAATGAATATTATGAATTTGCTTTAATGTGCTGAGAGGGATTGTTCAATGTGTTTATA
1 GAGAACATAATGAATATTATGAATTTGCTTTAAAGTGCTGAGAGGAATTGTTAAATGTGTTTATA
* * *
6698855 ACTTCAGAGACATCATGAAACCATGAATGTAATCCTCAGGTGTGCATGATTATGAGGGTCTGGCT
66 ACTGCAAAGACATCATGAAACCATGAATGTAATCCTCAGGTGTGCAAGATTATGAGGGTCTGGCT
* * *
6698920 TATGTTTGTGGCACAATTATCAAGGAATCTAGTATATGCAAGTATTGGTTATATTTGTGACATGA
131 TATGTTTGTGGCACAATTATCAAGCAATCTAGTATATGCAAGTACTGGTTATATTTGCGACATGA
** *
6698985 TTTTTATCAAGAAGTGCTAGAAAAAGCT-TATATGTTGTAAAGCTATT
196 TCGTTATCAAGAAGTGCTACAAAAAG-TATATATGTTGTAAAGCTATT
* *
6699032 GAGAACATAATGAATATTATGAATTTTCTTTAAAGTTCTGAGAGGAATTGTTTAAAATGTGTTTA
1 GAGAACATAATGAATATTATGAATTTGCTTTAAAGTGCTGAGAGGAATTG-TT-AAATGTGTTTA
* * * * *
6699097 TAACTGCAAATACTTCATTAAACTATGAATGTAATCCTCGGGTGTGCAAGATTAT-ATGGGTCTG
64 TAACTGCAAAGACATCATGAAACCATGAATGTAATCCTCAGGTGTGCAAGATTATGA-GGGTCTG
* * *
6699161 G-TATATGTTTGTGGCACAATTATCAAGCAGTCTAGTATATGCCAGTGCTGGTTATATTTGCGAC
128 GCT-TATGTTTGTGGCACAATTATCAAGCAATCTAGTATATGCAAGTACTGGTTATATTTGCGAC
* *
6699225 ATGATCGTTATGAAGAAGTGCTACAAAAAGTATATATGTTTTAAAGCT
192 ATGATCGTTATCAAGAAGTGCTACAAAAAGTATATATGTTGTAAAGCT
6699273 TTCGAGATGA
Statistics
Matches: 211, Mismatches: 25, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
242 45 0.21
243 5 0.02
244 161 0.76
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (242 bp):
GAGAACATAATGAATATTATGAATTTGCTTTAAAGTGCTGAGAGGAATTGTTAAATGTGTTTATA
ACTGCAAAGACATCATGAAACCATGAATGTAATCCTCAGGTGTGCAAGATTATGAGGGTCTGGCT
TATGTTTGTGGCACAATTATCAAGCAATCTAGTATATGCAAGTACTGGTTATATTTGCGACATGA
TCGTTATCAAGAAGTGCTACAAAAAGTATATATGTTGTAAAGCTATT
Found at i:6708443 original size:609 final size:599
Alignment explanation
Indices: 6707226--6708406 Score: 1918
Period size: 609 Copynumber: 2.0 Consensus size: 599
6707216 GAGAAAAAGT
6707226 TTCAGTTTATTGAGATAGTGTAAGATATAAGTGAGCCAAAAATCAATGAGAATTTCCTCAATAAA
1 TTCAGTTTATTGAGATAGTGTAAGATATAAGTGAGCCAAAAATCAATGAGAATTTCCTCAATAAA
* *
6707291 ATTTATTGTGGAATCAGAGTAGACATCATGTCACAAATAGCCAACTAGGAAAATGCACCAAAATA
66 ATTTATAGTCGAATCAGAGTAGACATCATGTCACAAATAGCCAACTAGGAAAATGCACCAAAATA
6707356 GAATATTAATTCGGTGGCAAGTGGAAAGTTCAATTGAACAAGGCTGCCCCTATGGTAGCAGCCTG
131 GAATATTAATTCGGTGGCAAGTGGAAAGTTCAATTGAACAAGGCTGCCCCTATGGTAGCAGCCTG
6707421 CTGTGCACCATCTCTAGCCAACAGTCATATCAGAGAACTGCAACCCATGCTTAGCGCATTTAGGA
196 CTGTGCACCATCTCTAGCCAACAGTCATATCAGAGAACTGCAACCCATGCTTAGCGCATTTAGGA
*
6707486 TGTGTAGGACCTGCACAACACAAAGGTATTTCTGCCACTCACTTATCACGTCTCCATTTACTCTG
261 TCTGTAGGACCTGCACAACACAAAGGTATTTCTGCCACTCACTTATCACGTCTCCATTTACTCTG
* *
6707551 TTTTCTGCCCCAACACCTTTGACATTTCCTGGAATGTCATCATGCCACAAAGAACTAAAACCATG
326 TTTTCTGCCCAAACACCTTCGACATTTCCTGGAATGTCATCATGCCACAAAGAACTAAAACCATG
*
6707616 GATGAAAGGTGCCACAGCATGCTGCCACTTGGTCTGAGCAACCCTTGCTGCTATTTAAATAATCA
391 GATGAAAGGTGCCACAGCATGCTGCCACTTGGTCTGAGCAACCCTGGCTGCTATTTAAATAATCA
** * * *
6707681 TGATAAATGGTTAAGTGGGCTCCTGAAGAACATCTGTACAGAGTAACAACTATACAGGTGATAAT
456 CAATAAATGGTTAAGTGGGCTCCTGAAGAACATCTGTAAAGAATAACAACAATACAGGTGATAAT
*
6707746 CATAATCTATATGATGCGTCTTCTTATTGAAAGGATCAGAATTTGACATTTTNNNNNNNNNNCTC
521 CATAATCTATATGATGCGTCTTCATATTGAAAGGATCAGAATTTGACATTTT----------CTC
6707811 ATATCTGACCAAGCTTCAAATAGC
576 ATATCTGACCAAGCTTCAAATAGC
* *
6707835 TTCAGTTTATTGAGATTGTGTAAGATATAAGTGAGCCAAAAATTAATGAGAATTTCCTCAATAAA
1 TTCAGTTTATTGAGATAGTGTAAGATATAAGTGAGCCAAAAATCAATGAGAATTTCCTCAATAAA
* *
6707900 ATTTATAGTCGAATCAGAGTAGACATCATGTCACATATAGCCAATTAGGAAAATGCA-CAAGAAT
66 ATTTATAGTCGAATCAGAGTAGACATCATGTCACAAATAGCCAACTAGGAAAATGCACCAA-AAT
* * *
6707964 AGAATATTAATTCTGTGGCAAAG-GGAAAGTTCCATTGAACAAGGCTGCCCCTATGGTAGCAGTC
130 AGAATATTAATTCGGTGGC-AAGTGGAAAGTTCAATTGAACAAGGCTGCCCCTATGGTAGCAGCC
* *
6708028 TGCTGTGCACCATCTCTAGCCAACAGTCATATCAGTGAACTGTAACCCATGCTTAGCGCATTTTA
194 TGCTGTGCACCATCTCTAGCCAACAGTCATATCAGAGAACTGCAACCCATGCTTAGCGCA-TTTA
* * *
6708093 GGATCTGTGGGACCTGCATAACACAAAGGTATTTCTGCCCCTCACTTATCACGTCTCCATTTACT
258 GGATCTGTAGGACCTGCACAACACAAAGGTATTTCTGCCACTCACTTATCACGTCTCCATTTACT
*
6708158 CTGTTTTCTGCCCAAACACC-TCGACATTTCCTGGAATGTCGTCATGCCACAAAGAACTAAAACC
323 CTGTTTTCTGCCCAAACACCTTCGACATTTCCTGGAATGTCATCATGCCACAAAGAACTAAAACC
* * * * *
6708222 CTGGGTGAAAGGTGCCACAGCATGCTGTCACTTGGTTTGAGCAACCCTGGCTGCTGTTTAAATAA
388 ATGGATGAAAGGTGCCACAGCATGCTGCCACTTGGTCTGAGCAACCCTGGCTGCTATTTAAATAA
* * *
6708287 TCACAATAAATGGTTAAGTGGGCTCCTGAAGAACTTCTGTAAATAATAACAACAATACTGGTGAT
453 TCACAATAAATGGTTAAGTGGGCTCCTGAAGAACATCTGTAAAGAATAACAACAATACAGGTGAT
*
6708352 AATCATAATCTATATTATGCGTCTTCATATTGAAAGGATCAGAATTTGACATTTT
518 AATCATAATCTATATGATGCGTCTTCATATTGAAAGGATCAGAATTTGACATTTT
6708407 NNNNNNNNNN
Statistics
Matches: 535, Mismatches: 34, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
608 3 0.01
609 445 0.83
610 87 0.16
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (599 bp):
TTCAGTTTATTGAGATAGTGTAAGATATAAGTGAGCCAAAAATCAATGAGAATTTCCTCAATAAA
ATTTATAGTCGAATCAGAGTAGACATCATGTCACAAATAGCCAACTAGGAAAATGCACCAAAATA
GAATATTAATTCGGTGGCAAGTGGAAAGTTCAATTGAACAAGGCTGCCCCTATGGTAGCAGCCTG
CTGTGCACCATCTCTAGCCAACAGTCATATCAGAGAACTGCAACCCATGCTTAGCGCATTTAGGA
TCTGTAGGACCTGCACAACACAAAGGTATTTCTGCCACTCACTTATCACGTCTCCATTTACTCTG
TTTTCTGCCCAAACACCTTCGACATTTCCTGGAATGTCATCATGCCACAAAGAACTAAAACCATG
GATGAAAGGTGCCACAGCATGCTGCCACTTGGTCTGAGCAACCCTGGCTGCTATTTAAATAATCA
CAATAAATGGTTAAGTGGGCTCCTGAAGAACATCTGTAAAGAATAACAACAATACAGGTGATAAT
CATAATCTATATGATGCGTCTTCATATTGAAAGGATCAGAATTTGACATTTTCTCATATCTGACC
AAGCTTCAAATAGC
Found at i:6710297 original size:2 final size:2
Alignment explanation
Indices: 6710290--6710331 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
6710280 AGGTGAGCCC
6710290 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6710331 T
1 T
6710332 TAGAATTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6712162 original size:14 final size:15
Alignment explanation
Indices: 6712133--6712168 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
6712123 ATGTTCGGAA
*
6712133 ATGTTATTATACATC
1 ATGTTGTTATACATC
6712148 ATGTTGTTA-ACATC
1 ATGTTGTTATACATC
6712162 ATGTTGT
1 ATGTTGT
6712169 AAAATGTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (15 bp):
ATGTTGTTATACATC
Found at i:6712198 original size:27 final size:28
Alignment explanation
Indices: 6712160--6712214 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
6712150 GTTGTTAACA
6712160 TCATGTTGTAAAATGT-AGTGTTACATG
1 TCATGTTGTAAAATGTAAGTGTTACATG
* *
6712187 TCATAGTT-TAAAATTTAATTGTTACATG
1 TCAT-GTTGTAAAATGTAAGTGTTACATG
6712215 CCATTTAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (28 bp):
TCATGTTGTAAAATGTAAGTGTTACATG
Found at i:6712301 original size:27 final size:27
Alignment explanation
Indices: 6712239--6712331 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
6712229 TTGTTATACA
* * * *
6712239 CCATGTTAAAAATGTTGTTATTATACG
1 CCATGTTGAAAATGTAGTTATTACAAG
* *
6712266 TCATATTGAAAATGTAGTTATTACAAG
1 CCATGTTGAAAATGTAGTTATTACAAG
* * * *
6712293 CCTTGTTGAAGATTTAGTTATTACATG
1 CCATGTTGAAAATGTAGTTATTACAAG
*
6712320 TCATGTTGAAAA
1 CCATGTTGAAAA
6712332 ATATAATTAC
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (27 bp):
CCATGTTGAAAATGTAGTTATTACAAG
Found at i:6712350 original size:25 final size:25
Alignment explanation
Indices: 6712312--6712368 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
6712302 AGATTTAGTT
*
6712312 ATTACATGTCATGTTGAAAAATATA
1 ATTACACGTCATGTTGAAAAATATA
*
6712337 ATTACACGTTATGTTGAAAAATATA
1 ATTACACGTCATGTTGAAAAATATA
*
6712362 GTTACAC
1 ATTACAC
6712369 AGCATATTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.42, C:0.11, G:0.12, T:0.35
Consensus pattern (25 bp):
ATTACACGTCATGTTGAAAAATATA
Found at i:6712378 original size:25 final size:25
Alignment explanation
Indices: 6712312--6712379 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
6712302 AGATTTAGTT
* *
6712312 ATTACATGTCATGTTGAAAAATATA
1 ATTACACGTCATATTGAAAAATATA
* *
6712337 ATTACACGTTATGTTGAAAAATATA
1 ATTACACGTCATATTGAAAAATATA
*
6712362 GTTACACAG-CATATTGAA
1 ATTACAC-GTCATATTGAA
6712380 GATTTAGTTG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 36 0.97
26 1 0.03
ACGTcount: A:0.43, C:0.10, G:0.13, T:0.34
Consensus pattern (25 bp):
ATTACACGTCATATTGAAAAATATA
Found at i:6718618 original size:72 final size:72
Alignment explanation
Indices: 6718501--6718640 Score: 280
Period size: 72 Copynumber: 1.9 Consensus size: 72
6718491 GTTTGGTTAT
6718501 TTAGCACTTTTGGATTTATTATTTGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCT
1 TTAGCACTTTTGGATTTATTATTTGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCT
6718566 TTTTGCC
66 TTTTGCC
6718573 TTAGCACTTTTGGATTTATTATTTGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCT
1 TTAGCACTTTTGGATTTATTATTTGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCT
6718638 TTT
66 TTT
6718641 GACTTTGTTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 68 1.00
ACGTcount: A:0.17, C:0.17, G:0.19, T:0.46
Consensus pattern (72 bp):
TTAGCACTTTTGGATTTATTATTTGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCT
TTTTGCC
Found at i:6718662 original size:29 final size:30
Alignment explanation
Indices: 6718598--6718722 Score: 149
Period size: 29 Copynumber: 4.4 Consensus size: 30
6718588 TTATTATTTG
6718598 CTTTAGCA-CTTTTGGAACTTTGTTAGGTGC
1 CTTTAGCACCTTTT-GAACTTTGTTAGGTGC
*
6718628 C-GTAGCACCTTTTG-ACTTTGTTAGGTGC
1 CTTTAGCACCTTTTGAACTTTGTTAGGTGC
6718656 CTTTAGCACC-TTTGAACTTTGTTAGGTGC
1 CTTTAGCACCTTTTGAACTTTGTTAGGTGC
* *
6718685 C-TTAACATCTTTTG-ACTTTG-TAGGTG-
1 CTTTAGCACCTTTTGAACTTTGTTAGGTGC
*
6718711 CTGTAGCACCTT
1 CTTTAGCACCTT
6718723 AGGATTTTGG
Statistics
Matches: 83, Mismatches: 7, Indels: 13
0.81 0.07 0.13
Matches are distributed among these distances:
26 1 0.01
27 13 0.16
28 31 0.37
29 32 0.39
30 6 0.07
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.42
Consensus pattern (30 bp):
CTTTAGCACCTTTTGAACTTTGTTAGGTGC
Found at i:6718673 original size:57 final size:56
Alignment explanation
Indices: 6718596--6718722 Score: 184
Period size: 57 Copynumber: 2.2 Consensus size: 56
6718586 ATTTATTATT
* *
6718596 TGCTTTAGCACTTTTGGAACTTTGTTAGGTGCCGTAGCACCTTTTGACTTTGTTAGG
1 TGCTTTAGCACCTTTGGAACTTTGTTAGGTGCCGTAACACCTTTTGACTTTG-TAGG
* *
6718653 TGCCTTTAGCACCTTT-GAACTTTGTTAGGTGCCTTAACATCTTTTGACTTTGTAGG
1 TG-CTTTAGCACCTTTGGAACTTTGTTAGGTGCCGTAACACCTTTTGACTTTGTAGG
*
6718709 TGCTGTAGCACCTT
1 TGCTTTAGCACCTT
6718723 AGGATTTTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
55 11 0.17
56 6 0.09
57 35 0.55
58 12 0.19
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.42
Consensus pattern (56 bp):
TGCTTTAGCACCTTTGGAACTTTGTTAGGTGCCGTAACACCTTTTGACTTTGTAGG
Found at i:6720538 original size:28 final size:28
Alignment explanation
Indices: 6720506--6720588 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 28
6720496 AAATTCATTA
* * * *
6720506 TATTTGACGACCTGAGAGGTGTGATTGC
1 TATTTAACAACCTGAAAAGTGTGATTGC
**
6720534 TATTTAACAATGTGAAAAGTGTGATTGC
1 TATTTAACAACCTGAAAAGTGTGATTGC
**
6720562 TATTTAACAATGTGAAAAGTGTGATTG
1 TATTTAACAACCTGAAAAGTGTGATTG
6720589 GCTACTAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.35
Consensus pattern (28 bp):
TATTTAACAACCTGAAAAGTGTGATTGC
Found at i:6725307 original size:2 final size:2
Alignment explanation
Indices: 6725295--6725330 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
6725285 GTCTGCTTAG
* *
6725295 AT AT TT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6725331 TCAAGCAATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:6733791 original size:20 final size:21
Alignment explanation
Indices: 6733748--6733788 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6733738 CATCCAAATA
*
6733748 AAAATTATATAACAATATTTT
1 AAAATTATATAAAAATATTTT
6733769 AAAATTA-ATACAAAATATTT
1 AAAATTATATA-AAAATATTT
6733789 AAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAATTATATAAAAATATTTT
Found at i:6735588 original size:31 final size:31
Alignment explanation
Indices: 6735531--6735590 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
6735521 ATAATATAAA
* * *
6735531 ACTAAATTAAACAAAATGTTCTAATACATTG
1 ACTAAATTAAACAAAATCTCCCAATACATTG
6735562 ACTAAATTAAACAAAA-CTCCACAATACAT
1 ACTAAATTAAACAAAATCTCC-CAATACAT
6735591 ATACTTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 2 0.08
31 23 0.92
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.27
Consensus pattern (31 bp):
ACTAAATTAAACAAAATCTCCCAATACATTG
Found at i:6736787 original size:21 final size:21
Alignment explanation
Indices: 6736759--6736818 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
6736749 AAAGTTACAA
6736759 TCAATTACAAAAATATAAACT
1 TCAATTACAAAAATATAAACT
* *
6736780 TTAATTACAAAAAGAT-AACT
1 TCAATTACAAAAATATAAACT
*
6736800 TCACTTACAAAAATATAAA
1 TCAATTACAAAAATATAAA
6736819 TTTTTGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (21 bp):
TCAATTACAAAAATATAAACT
Found at i:6739766 original size:24 final size:23
Alignment explanation
Indices: 6739723--6739768 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
6739713 ATAAAAATTT
6739723 ATTTAATTTAAAATAAAATATATA
1 ATTTAATTTAAAATAAAATA-ATA
6739747 ATTTAA-TT-AAAT-AAATAATA
1 ATTTAATTTAAAATAAAATAATA
6739767 AT
1 AT
6739769 ATTTTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.23
21 5 0.23
22 4 0.18
23 2 0.09
24 6 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
ATTTAATTTAAAATAAAATAATA
Found at i:6739772 original size:22 final size:22
Alignment explanation
Indices: 6739713--6739761 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
6739703 ATTATAAATT
*
6739713 ATAAAA-ATTTATTTAATTTAAA
1 ATAAAATATATATTTAA-TTAAA
6739735 ATAAAATATATAATTTAATT-AA
1 ATAAAATATAT-ATTTAATTAAA
6739757 ATAAA
1 ATAAA
6739762 TAATAATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 13 0.54
23 5 0.21
24 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
ATAAAATATATATTTAATTAAA
Found at i:6747827 original size:30 final size:30
Alignment explanation
Indices: 6747779--6747871 Score: 116
Period size: 30 Copynumber: 3.1 Consensus size: 30
6747769 AATTAGTTAA
* *
6747779 AAAGACTTATTTTG-TTCAAAATAAAATTAT
1 AAAGATTTA-TTTGATTCAAAATAAAAGTAT
*
6747809 AAATATTTATTTGATTCAAAATAAAAGTAT
1 AAAGATTTATTTGATTCAAAATAAAAGTAT
* * *
6747839 AAGGATTTATTTGATTTAAACTAAAAGTAT
1 AAAGATTTATTTGATTCAAAATAAAAGTAT
6747869 AAA
1 AAA
6747872 AGCTTGATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
29 4 0.07
30 50 0.93
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (30 bp):
AAAGATTTATTTGATTCAAAATAAAAGTAT
Found at i:6748630 original size:26 final size:26
Alignment explanation
Indices: 6748607--6748659 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6748597 GTATATTATT
6748607 AATAA-AAATAAAATTAATAAATTAAA
1 AATAATAAATAAAA-TAATAAATTAAA
**
6748633 AATAATTTATAAAATAATAAATTAAA
1 AATAATAAATAAAATAATAAATTAAA
6748659 A
1 A
6748660 TTTAAAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (26 bp):
AATAATAAATAAAATAATAAATTAAA
Found at i:6748634 original size:15 final size:14
Alignment explanation
Indices: 6748607--6748659 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 14
6748597 GTATATTATT
6748607 AATAA-AAA-TAAA
1 AATAATAAATTAAA
*
6748619 ATTAATAAATTAAA
1 AATAATAAATTAAA
6748633 AATAAT---TTATAA
1 AATAATAAATTA-AA
6748645 AATAATAAATTAAA
1 AATAATAAATTAAA
6748659 A
1 A
6748660 TTTAAAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
11 3 0.09
12 12 0.36
13 3 0.09
14 12 0.36
15 3 0.09
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AATAATAAATTAAA
Found at i:6748701 original size:21 final size:22
Alignment explanation
Indices: 6748672--6748716 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
6748662 TAAAATCATA
6748672 AATAGAGTAATT-AATTAATTAT
1 AATAGAGT-ATTAAATTAATTAT
6748694 AATA-AGTATTAAATTAATTAT
1 AATAGAGTATTAAATTAATTAT
6748715 AA
1 AA
6748717 AAATTTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.14
21 15 0.68
22 4 0.18
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
AATAGAGTATTAAATTAATTAT
Found at i:6752099 original size:33 final size:33
Alignment explanation
Indices: 6752056--6752125 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
6752046 GATAAAAGTT
* *
6752056 GTTGTGAGTTGTTGAAATATTGAATGCAAAATG
1 GTTGTAAGTTGATGAAATATTGAATGCAAAATG
*
6752089 GTTGTAAGTTGATGAAATATTGAATGCAAAATT
1 GTTGTAAGTTGATGAAATATTGAATGCAAAATG
6752122 GTTG
1 GTTG
6752126 ATTGTAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.03, G:0.26, T:0.37
Consensus pattern (33 bp):
GTTGTAAGTTGATGAAATATTGAATGCAAAATG
Found at i:6752438 original size:66 final size:66
Alignment explanation
Indices: 6752351--6752485 Score: 252
Period size: 66 Copynumber: 2.0 Consensus size: 66
6752341 AGTTTTTTTC
*
6752351 CAAACAAGTAATATTCGTATTTATAATAATTGCATAAAGTAATTCAATAATAGTGATCACTTAAC
1 CAAACAAGTAATAGTCGTATTTATAATAATTGCATAAAGTAATTCAATAATAGTGATCACTTAAC
6752416 T
66 T
*
6752417 CAAACAAGTAATAGTCGTATTTATAATAATTGCATAAAGTAATTCAATAATAGTGATCACTTAAT
1 CAAACAAGTAATAGTCGTATTTATAATAATTGCATAAAGTAATTCAATAATAGTGATCACTTAAC
6752482 T
66 T
6752483 CAA
1 CAA
6752486 TATATATCTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (66 bp):
CAAACAAGTAATAGTCGTATTTATAATAATTGCATAAAGTAATTCAATAATAGTGATCACTTAAC
T
Found at i:6755261 original size:37 final size:38
Alignment explanation
Indices: 6755199--6755278 Score: 117
Period size: 37 Copynumber: 2.1 Consensus size: 38
6755189 ATAGAATATA
* *
6755199 TATTGAATATAAATACAAATGATATTACTTTATGTAAT
1 TATTGAATATAAATACAAATAATATTACTTTATGCAAT
* *
6755237 TATTG-ATATGAATGCAAATAATATTACTTTATGCAAT
1 TATTGAATATAAATACAAATAATATTACTTTATGCAAT
6755274 TATTG
1 TATTG
6755279 TGTAGGACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 33 0.87
38 5 0.13
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.42
Consensus pattern (38 bp):
TATTGAATATAAATACAAATAATATTACTTTATGCAAT
Found at i:6755660 original size:33 final size:32
Alignment explanation
Indices: 6755574--6755662 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 32
6755564 TGCTGTTTAT
* **
6755574 ATTTT-CATTCAATATTTCAA-TATTTTAATA
1 ATTTTGCATTCAATATTTCAACAATTACAATA
*
6755604 ATTTTGCATTCAATA-TTCTAACAACTTACAATC
1 ATTTTGCATTCAATATTTC-AACAA-TTACAATA
6755637 ATTTTGCATTCAATATTTCAACAATT
1 ATTTTGCATTCAATATTTCAACAATT
6755663 TATAACAACT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
30 8 0.16
31 11 0.22
32 3 0.06
33 25 0.50
34 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.02, T:0.46
Consensus pattern (32 bp):
ATTTTGCATTCAATATTTCAACAATTACAATA
Found at i:6758914 original size:5 final size:5
Alignment explanation
Indices: 6758904--6758947 Score: 65
Period size: 5 Copynumber: 9.0 Consensus size: 5
6758894 TCCAAAGACG
6758904 AGAGA AGAGA AGAGA AGAGA AGAGA AGAG- AGAG- AGAGA CAGAGA
1 AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA AGAGA -AGAGA
6758948 GAGTTAAGCG
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
4 8 0.22
5 24 0.65
6 5 0.14
ACGTcount: A:0.57, C:0.02, G:0.41, T:0.00
Consensus pattern (5 bp):
AGAGA
Found at i:6758936 original size:2 final size:2
Alignment explanation
Indices: 6758903--6758950 Score: 52
Period size: 2 Copynumber: 26.5 Consensus size: 2
6758893 GTCCAAAGAC
6758903 GA GA GA -A GA GA -A GA GA -A GA GA -A GA GA -A GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
6758940 GA CA GA GA GA G
1 GA GA GA GA GA G
6758951 TTAAGCGAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
1 5 0.13
2 34 0.87
ACGTcount: A:0.54, C:0.02, G:0.44, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6769326 original size:3 final size:3
Alignment explanation
Indices: 6769320--6769347 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6769310 TACCCTTCGC
6769320 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6769348 ATGTATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6771022 original size:26 final size:23
Alignment explanation
Indices: 6770966--6771024 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
6770956 ATTTAAGAAA
* *
6770966 ATTTAAATAAAGTTTATTTTTTT
1 ATTTAAATCAAGTTTATGTTTTT
6770989 ATTT-AATCAAGTTCATATGTTTTT
1 ATTTAAATCAAGTT--TATGTTTTT
6771013 ATTTTAAATCAA
1 A-TTTAAATCAA
6771025 ATAGGTTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 8 0.27
23 4 0.13
24 9 0.30
25 3 0.10
26 6 0.20
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (23 bp):
ATTTAAATCAAGTTTATGTTTTT
Found at i:6788934 original size:20 final size:20
Alignment explanation
Indices: 6788906--6788946 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6788896 CTGAAAGAAA
*
6788906 GGTTGTTTCGAAAGTTGTTT
1 GGTTATTTCGAAAGTTGTTT
6788926 GGTTATTTCGAAAGTTGTTT
1 GGTTATTTCGAAAGTTGTTT
6788946 G
1 G
6788947 ACACATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.29, T:0.49
Consensus pattern (20 bp):
GGTTATTTCGAAAGTTGTTT
Found at i:6799044 original size:35 final size:35
Alignment explanation
Indices: 6798998--6799134 Score: 179
Period size: 35 Copynumber: 3.8 Consensus size: 35
6798988 TTAGTCTTAG
6798998 AACAAGATTAAAGCAAAGAATAGCCTAAAGATTAA
1 AACAAGATTAAAGCAAAGAATAGCCTAAAGATTAA
*
6799033 AACAAGATTAAAGCAAAGCATAGCCTAAACAAGGA-TAA
1 AACAAGATTAAAGCAAAGAATAGCCT--A-AA-GATTAA
*
6799071 AAGATA-ATTAAAGCAAAGAATAGCCTAAAGATTAA
1 AACA-AGATTAAAGCAAAGAATAGCCTAAAGATTAA
* *
6799106 AACAAGATTAAAGCAAAGCATAACCTAAA
1 AACAAGATTAAAGCAAAGAATAGCCTAAA
6799135 CAAGAATAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 14
0.82 0.06 0.13
Matches are distributed among these distances:
34 3 0.03
35 54 0.61
36 1 0.01
37 1 0.01
38 27 0.30
39 3 0.03
ACGTcount: A:0.57, C:0.13, G:0.14, T:0.16
Consensus pattern (35 bp):
AACAAGATTAAAGCAAAGAATAGCCTAAAGATTAA
Found at i:6799081 original size:38 final size:38
Alignment explanation
Indices: 6799039--6799161 Score: 148
Period size: 38 Copynumber: 3.3 Consensus size: 38
6799029 TTAAAACAAG
6799039 ATTAAAGCAAAGCATAGCCTAAACAAGGATAAAAGATA
1 ATTAAAGCAAAGCATAGCCTAAACAAGGATAAAAGATA
* *
6799077 ATTAAAGCAAAGAATAGCCT--A-AA-GATTAAAACA-A
1 ATTAAAGCAAAGCATAGCCTAAACAAGGA-TAAAAGATA
* *
6799111 GATTAAAGCAAAGCATAACCTAAACAAGAATAAAAGATA
1 -ATTAAAGCAAAGCATAGCCTAAACAAGGATAAAAGATA
*
6799150 ATTTAAGCAAAG
1 ATTAAAGCAAAG
6799162 AATATATGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
34 3 0.04
35 26 0.37
36 1 0.01
37 1 0.01
38 38 0.54
39 2 0.03
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.17
Consensus pattern (38 bp):
ATTAAAGCAAAGCATAGCCTAAACAAGGATAAAAGATA
Found at i:6799091 original size:73 final size:73
Alignment explanation
Indices: 6799004--6799165 Score: 297
Period size: 73 Copynumber: 2.2 Consensus size: 73
6798994 TTAGAACAAG
* *
6799004 ATTAAAGCAAAGAATAGCCTAAAGATTAAAACAAGATTAAAGCAAAGCATAGCCTAAACAAGGAT
1 ATTAAAGCAAAGAATAGCCTAAAGATTAAAACAAGATTAAAGCAAAGCATAACCTAAACAAGAAT
6799069 AAAAGATA
66 AAAAGATA
6799077 ATTAAAGCAAAGAATAGCCTAAAGATTAAAACAAGATTAAAGCAAAGCATAACCTAAACAAGAAT
1 ATTAAAGCAAAGAATAGCCTAAAGATTAAAACAAGATTAAAGCAAAGCATAACCTAAACAAGAAT
6799142 AAAAGATA
66 AAAAGATA
*
6799150 ATTTAAGCAAAGAATA
1 ATTAAAGCAAAGAATA
6799166 TATGCTTTGT
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 86 1.00
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.17
Consensus pattern (73 bp):
ATTAAAGCAAAGAATAGCCTAAAGATTAAAACAAGATTAAAGCAAAGCATAACCTAAACAAGAAT
AAAAGATA
Found at i:6805736 original size:2 final size:2
Alignment explanation
Indices: 6805731--6805755 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6805721 CATAAATTGC
6805731 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6805756 GTCATTTCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6823663 original size:44 final size:44
Alignment explanation
Indices: 6823600--6823688 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
6823590 CCTCAAGATA
*
6823600 AAGAATTTTGAATTGTGAAGGTAACACGCATAAATATAAAGCAC
1 AAGAATTTTGAATTGTGAAGGCAACACGCATAAATATAAAGCAC
6823644 AAGAATTTTGAATTGTGAAGGCAACACGCATAAATATAAAGCAC
1 AAGAATTTTGAATTGTGAAGGCAACACGCATAAATATAAAGCAC
6823688 A
1 A
6823689 TGTTTGAAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.46, C:0.12, G:0.18, T:0.24
Consensus pattern (44 bp):
AAGAATTTTGAATTGTGAAGGCAACACGCATAAATATAAAGCAC
Found at i:6844255 original size:21 final size:21
Alignment explanation
Indices: 6844229--6844274 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
6844219 GGGAGCATTG
6844229 AGAAGCATTTCCCAAGTGAAC
1 AGAAGCATTTCCCAAGTGAAC
6844250 AGAAGCATTTCCCAAGTGAAC
1 AGAAGCATTTCCCAAGTGAAC
6844271 AGAA
1 AGAA
6844275 ATGGTTTGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (21 bp):
AGAAGCATTTCCCAAGTGAAC
Found at i:6849045 original size:14 final size:15
Alignment explanation
Indices: 6849020--6849048 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
6849010 TAAATTTTTA
6849020 TAATTAATAATTAAT
1 TAATTAATAATTAAT
6849035 TAATT-ATAATTAAT
1 TAATTAATAATTAAT
6849049 CAAAATATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAATTAATAATTAAT
Found at i:6854949 original size:2 final size:2
Alignment explanation
Indices: 6854942--6854988 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
6854932 TCTATCGATC
6854942 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6854984 TA TA T
1 TA TA T
6854989 GCTGCAATAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6857052 original size:19 final size:18
Alignment explanation
Indices: 6857020--6857060 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
6857010 CATTTGTTAA
6857020 AAAATTTTAATTTTTTTT
1 AAAATTTTAATTTTTTTT
6857038 AAAATTTTAATTTTTTTT
1 AAAATTTTAATTTTTTTT
6857056 AAAAT
1 AAAAT
6857061 AAAAACAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AAAATTTTAATTTTTTTT
Found at i:6869391 original size:6 final size:6
Alignment explanation
Indices: 6869380--6869406 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6869370 CTTTGATTGG
6869380 CCCAGA CCCAGA CCCAGA CCCAGA CCC
1 CCCAGA CCCAGA CCCAGA CCCAGA CCC
6869407 GATCTCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.56, G:0.15, T:0.00
Consensus pattern (6 bp):
CCCAGA
Found at i:6880136 original size:2 final size:2
Alignment explanation
Indices: 6880129--6880166 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
6880119 CCTTTCATTA
*
6880129 AT AT AT AT AT AT AT AT AT AT AT AA AT A- AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6880167 TGGACTAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6882267 original size:34 final size:33
Alignment explanation
Indices: 6882224--6882312 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 33
6882214 GATAAGTATT
6882224 TTGTATGGCAATGTCAATGGGGAAGCCAAATATC
1 TTGTATGGCAATGTCAATGGGGAAGCCAAAT-TC
* **
6882258 TTGTATGGCAATGTCAATAGGAGAAGCTTAATTC
1 TTGTATGGCAATGTCAAT-GGGGAAGCCAAATTC
* **
6882292 GTGTACAGCAATGTCAATGGG
1 TTGTATGGCAATGTCAATGGG
6882313 AAACTACATT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
33 2 0.04
34 35 0.74
35 10 0.21
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.28
Consensus pattern (33 bp):
TTGTATGGCAATGTCAATGGGGAAGCCAAATTC
Found at i:6882666 original size:1 final size:1
Alignment explanation
Indices: 6882662--6882761 Score: 146
Period size: 1 Copynumber: 100.0 Consensus size: 1
6882652 TTTTTTTTTT
* * * *
6882662 GGGGGGGGGGGGGGAGGGGGGGTGGGGGTGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
* *
6882727 GGGGGGGGGGGGGGGGTGGGGGGTGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
6882762 TGTGGTGGTT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.01, C:0.00, G:0.94, T:0.05
Consensus pattern (1 bp):
G
Found at i:6882725 original size:44 final size:44
Alignment explanation
Indices: 6882662--6882761 Score: 164
Period size: 44 Copynumber: 2.3 Consensus size: 44
6882652 TTTTTTTTTT
* *
6882662 GGGGGGGGGGGGGGAGGGGGGGTGGGGGTGGGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGTGGGGGG
*
6882706 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGG
1 GGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGTGGGGGG
*
6882750 TGGGGGGGGGGG
1 GGGGGGGGGGGG
6882762 TGTGGTGGTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.01, C:0.00, G:0.94, T:0.05
Consensus pattern (44 bp):
GGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGTGGGGGG
Found at i:6890162 original size:15 final size:15
Alignment explanation
Indices: 6890119--6890162 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
6890109 TTTAATAAAT
* *
6890119 AAAATTTTTAATTTA
1 AAAATATTTATTTTA
6890134 AAAATATTTATTTTA
1 AAAATATTTATTTTA
6890149 AAAAT-TTTACTTTT
1 AAAATATTTA-TTTT
6890163 TGATATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 4 0.15
15 22 0.85
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
AAAATATTTATTTTA
Found at i:6900283 original size:20 final size:20
Alignment explanation
Indices: 6900245--6900283 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
6900235 AATATAATAT
*
6900245 TTTAAAAAATTCTTGAATTA
1 TTTAAAAAATTCTTAAATTA
6900265 TTTAAGAAAATT-TTAAATT
1 TTTAA-AAAATTCTTAAATT
6900284 TTAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
TTTAAAAAATTCTTAAATTA
Found at i:6903445 original size:66 final size:66
Alignment explanation
Indices: 6903334--6903527 Score: 230
Period size: 66 Copynumber: 2.9 Consensus size: 66
6903324 CGTTCCATTA
* * * * *
6903334 GATCCAAGATTAAAAATCTCCGAAATTGTCATCTAG-TTTTGCTATCGATCCATCCAT-ACACCC
1 GATCCAAGATTAGAAATCTCCAAAATTGACAT-TGGATTTTGCTATCAATCCATCCATGA-ACCC
* *
6903397 TTG
64 CTC
* *
6903400 GATCTAAGATTAGAAATCTCCCAAATTGACATTGGATTTTGCTATCAATCCATCCATGAACCCCT
1 GATCCAAGATTAGAAATCTCCAAAATTGACATTGGATTTTGCTATCAATCCATCCATGAACCCCT
6903465 C
66 C
* * * * *
6903466 AATCCAAGATCAGAAATCTCTAAAATTGACATCGGATTTTGCTATCAATCCATCCCTGAACC
1 GATCCAAGATTAGAAATCTCCAAAATTGACATTGGATTTTGCTATCAATCCATCCATGAACC
6903528 TTGCCTTGTT
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
65 2 0.02
66 108 0.97
67 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (66 bp):
GATCCAAGATTAGAAATCTCCAAAATTGACATTGGATTTTGCTATCAATCCATCCATGAACCCCT
C
Found at i:6918866 original size:27 final size:28
Alignment explanation
Indices: 6918836--6918896 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
6918826 GAAATCTGAG
*
6918836 TTTTATTATATCTTTACATGTTA-CCCT
1 TTTTATTACATCTTTACATGTTATCCCT
* *
6918863 TTTTTTTGCATCTTTACATGTTATCCCT
1 TTTTATTACATCTTTACATGTTATCCCT
*
6918891 GTTTAT
1 TTTTAT
6918897 GCAGAAGGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 20 0.71
28 8 0.29
ACGTcount: A:0.18, C:0.18, G:0.07, T:0.57
Consensus pattern (28 bp):
TTTTATTACATCTTTACATGTTATCCCT
Found at i:6923994 original size:35 final size:35
Alignment explanation
Indices: 6923951--6924023 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
6923941 ACAATACAAG
* *
6923951 ATTATCAAATTCTGATATCTCATTAATAAAGTATT
1 ATTATCAAATTCTGATATCTCATCAATAAAATATT
* *
6923986 ATTATCAAATTTTGATATTTCATCAATAAAATATT
1 ATTATCAAATTCTGATATCTCATCAATAAAATATT
6924021 ATT
1 ATT
6924024 TTAAAGAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (35 bp):
ATTATCAAATTCTGATATCTCATCAATAAAATATT
Found at i:6924642 original size:30 final size:29
Alignment explanation
Indices: 6924574--6924666 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 29
6924564 TTAAAAAAAA
* * *
6924574 TTAT-TTTTTATTATATCTAATTAAATCTT
1 TTATATTTTTATTTTAACTAAATAAAT-TT
*
6924603 TT-TACTTTTATTTTGAACTAAATAAATTT
1 TTATATTTTTATTTT-AACTAAATAAATTT
* *
6924632 TTATATTTTTATTTTAAATTAAATAAATTC
1 TTATATTTTTATTTT-AACTAAATAAATTT
6924662 TTATA
1 TTATA
6924667 ATAAATAATT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.02
29 14 0.26
30 38 0.72
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.58
Consensus pattern (29 bp):
TTATATTTTTATTTTAACTAAATAAATTT
Found at i:6943263 original size:15 final size:14
Alignment explanation
Indices: 6943243--6943288 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
6943233 ATGTTTTAGA
6943243 GGAATTCTTTTGGAG
1 GGAATT-TTTTGGAG
*
6943258 GGAATTTTTTTAGAG
1 GGAA-TTTTTTGGAG
6943273 GGAACTTTTTTGGAG
1 GGAA-TTTTTTGGAG
6943288 G
1 G
6943289 AAAATTGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 25 0.93
16 2 0.07
ACGTcount: A:0.22, C:0.04, G:0.33, T:0.41
Consensus pattern (14 bp):
GGAATTTTTTGGAG
Found at i:6943290 original size:14 final size:14
Alignment explanation
Indices: 6943236--6943288 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
6943226 CTTAAAAATG
6943236 TTTTAGA-GGAATT
1 TTTTAGAGGGAATT
*
6943249 CTTTTGGAGGGAATTT
1 -TTTTAGAGGGAA-TT
6943265 TTTTAGAGGGAACTT
1 TTTTAGAGGGAA-TT
*
6943280 TTTTGGAGG
1 TTTTAGAGG
6943289 AAAATTGGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 6 0.18
15 25 0.76
16 2 0.06
ACGTcount: A:0.23, C:0.04, G:0.30, T:0.43
Consensus pattern (14 bp):
TTTTAGAGGGAATT
Found at i:6945495 original size:93 final size:93
Alignment explanation
Indices: 6945372--6945548 Score: 268
Period size: 93 Copynumber: 1.9 Consensus size: 93
6945362 CACTCCCAAT
* * **
6945372 GCTGCAGCGTTGATGCCACTGCTTGGTGCATGTTCCAGCGCTGTCCTC-TTGGTG-AAGGCAGTA
1 GCTGCAGCGTTGATGCCACTGCTTGGTGCATGTCCCAGCACTGTCC-CATTGGTGAAAGG-AACA
6945435 GCATCAACGCTGCAGCGCTGGGAGTGTGGC
64 GCATCAACGCTGCAGCGCTGGGAGTGTGGC
*
6945465 GCTGCAGCGTTGATGCCACTGCTTGGTGCATGTCCCAGCACTGTCCCATTGGTGAAAGGAACAGG
1 GCTGCAGCGTTGATGCCACTGCTTGGTGCATGTCCCAGCACTGTCCCATTGGTGAAAGGAACAGC
*
6945530 ATGAACGCTGCAGCGCTGG
66 ATCAACGCTGCAGCGCTGG
6945549 TGGCAAGAAT
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 1 0.01
93 71 0.93
94 4 0.05
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.23
Consensus pattern (93 bp):
GCTGCAGCGTTGATGCCACTGCTTGGTGCATGTCCCAGCACTGTCCCATTGGTGAAAGGAACAGC
ATCAACGCTGCAGCGCTGGGAGTGTGGC
Found at i:6946065 original size:15 final size:15
Alignment explanation
Indices: 6946044--6946088 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
6946034 GTTATCTTCT
6946044 CTGCAATCACATTGC
1 CTGCAATCACATTGC
* *
6946059 TTGCAATCACATTAC
1 CTGCAATCACATTGC
*
6946074 CTGTAATCACATTGC
1 CTGCAATCACATTGC
6946089 ATTGTAAAGT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (15 bp):
CTGCAATCACATTGC
Found at i:6947996 original size:12 final size:12
Alignment explanation
Indices: 6947976--6948004 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6947966 TTATCTTTAA
6947976 TTTTT-TTCTTT
1 TTTTTATTCTTT
6947987 TTTTTATTCTTT
1 TTTTTATTCTTT
6947999 TTTTTA
1 TTTTTA
6948005 AAATCCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTTATTCTTT
Found at i:6960733 original size:17 final size:16
Alignment explanation
Indices: 6960686--6960725 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
6960676 TTAAATAAAT
*
6960686 AAAAAA-TA-AATTTA
1 AAAAAATTATAATTAA
6960700 AAAAAATTATAATTAA
1 AAAAAATTATAATTAA
6960716 AAAAAATTAT
1 AAAAAATTAT
6960726 TTATTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 2 0.09
16 15 0.65
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAAATTATAATTAA
Found at i:6963084 original size:16 final size:16
Alignment explanation
Indices: 6963028--6963078 Score: 102
Period size: 16 Copynumber: 3.2 Consensus size: 16
6963018 ATATTTGTTA
6963028 TCAATTAATTTGTGTC
1 TCAATTAATTTGTGTC
6963044 TCAATTAATTTGTGTC
1 TCAATTAATTTGTGTC
6963060 TCAATTAATTTGTGTC
1 TCAATTAATTTGTGTC
6963076 TCA
1 TCA
6963079 GATAATAGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.25, C:0.14, G:0.12, T:0.49
Consensus pattern (16 bp):
TCAATTAATTTGTGTC
Found at i:6964591 original size:33 final size:33
Alignment explanation
Indices: 6964549--6964617 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
6964539 AAGAATCAAC
6964549 TAGCAGTGATTACAGGGATGTTGGTGAGTCAGG
1 TAGCAGTGATTACAGGGATGTTGGTGAGTCAGG
6964582 TAGCAGTGATTACAGGGATGTTGGTGAGTCAGG
1 TAGCAGTGATTACAGGGATGTTGGTGAGTCAGG
6964615 TAG
1 TAG
6964618 ATCGTATCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.25, C:0.09, G:0.39, T:0.28
Consensus pattern (33 bp):
TAGCAGTGATTACAGGGATGTTGGTGAGTCAGG
Found at i:6969065 original size:95 final size:94
Alignment explanation
Indices: 6968877--6969054 Score: 275
Period size: 95 Copynumber: 1.9 Consensus size: 94
6968867 ATATAGGAGA
*
6968877 CAAAGGCGGACAATGAAAGAGTAATTCATAGTGCTTTTATCTTTTCCATGTTCCCCATCAAAGCT
1 CAAAGGCGGACAATGAAAGAGTAATTCATAGTGCTTTTATCTTTTCCATGTTCCCCATCAAAACT
* *
6968942 TAAACTTTGCCTGGATAGAAGAAAAGAAAG
66 AAAACTTTGCCTAGATAGAAG-AAAGAAAG
* * * *
6968972 CAAAGGCGGGCAATGAAAGAGTAGTTCATGGTGCTTTTATCTTTTCCATGTTCCCTATCAAAACT
1 CAAAGGCGGACAATGAAAGAGTAATTCATAGTGCTTTTATCTTTTCCATGTTCCCCATCAAAACT
6969037 CAAAACTTTGCCTAGATA
66 -AAAACTTTGCCTAGATA
6969055 TGTAGAAGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
95 60 0.80
96 15 0.20
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (94 bp):
CAAAGGCGGACAATGAAAGAGTAATTCATAGTGCTTTTATCTTTTCCATGTTCCCCATCAAAACT
AAAACTTTGCCTAGATAGAAGAAAGAAAG
Found at i:6975473 original size:2 final size:2
Alignment explanation
Indices: 6975468--6975498 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6975458 CTTTTTTCTT
6975468 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6975499 GCATTCGAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6975578 original size:2 final size:2
Alignment explanation
Indices: 6975573--6975607 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6975563 TTCTCTCAAT
6975573 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6975608 CAAAGATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6976053 original size:21 final size:23
Alignment explanation
Indices: 6975996--6976053 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
6975986 TACGTACGAG
6975996 GACTGACATCAATTTATAAACTC
1 GACTGACATCAATTTATAAACTC
6976019 GACTGACATCAATTTATAAACTC
1 GACTGACATCAATTTATAAACTC
*
6976042 -ACT-ACTTCAATT
1 GACTGACATCAATT
6976054 AATGTCTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
21 8 0.24
22 3 0.09
23 23 0.68
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (23 bp):
GACTGACATCAATTTATAAACTC
Found at i:6976081 original size:30 final size:31
Alignment explanation
Indices: 6976034--6976092 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
6976024 ACATCAATTT
* *
6976034 ATAAACTCACTACTTCAATTAATGTCTATCA
1 ATAAACTCACAACTTCAATTAATATCTATCA
6976065 ATAAACT-ACAACTTCAATTAATATCTAT
1 ATAAACTCACAACTTCAATTAATATCTAT
6976093 GATCCTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.42, C:0.20, G:0.02, T:0.36
Consensus pattern (31 bp):
ATAAACTCACAACTTCAATTAATATCTATCA
Found at i:6976760 original size:2 final size:2
Alignment explanation
Indices: 6976753--6976783 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6976743 AAGAAAACAA
6976753 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
6976784 AAGAAAGATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:6980212 original size:95 final size:95
Alignment explanation
Indices: 6980049--6980240 Score: 366
Period size: 95 Copynumber: 2.0 Consensus size: 95
6980039 TTAAAGGACA
* *
6980049 TAGTTTATGTACTTCAGTTGGTCTTTTGTAGGGAAACATCCTTAAGTTCACATTTGGTGCGTAGG
1 TAGTTTATGTACTTCAGTTGGTCTTTTGTAGGGAAACATCCTTAAGTTCACATTTGGTGCATACG
6980114 ATTGGATATGGTAATTTCTTTATTCAATGC
66 ATTGGATATGGTAATTTCTTTATTCAATGC
6980144 TAGTTTATGTACTTCAGTTGGTCTTTTGTAGGGAAACATCCTTAAGTTCACATTTGGTGCATACG
1 TAGTTTATGTACTTCAGTTGGTCTTTTGTAGGGAAACATCCTTAAGTTCACATTTGGTGCATACG
6980209 ATTGGATATGGTAATTTCTTTATTCAATGC
66 ATTGGATATGGTAATTTCTTTATTCAATGC
6980239 TA
1 TA
6980241 TTATTTTCAT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (95 bp):
TAGTTTATGTACTTCAGTTGGTCTTTTGTAGGGAAACATCCTTAAGTTCACATTTGGTGCATACG
ATTGGATATGGTAATTTCTTTATTCAATGC
Found at i:6991065 original size:64 final size:64
Alignment explanation
Indices: 6990964--6991090 Score: 193
Period size: 64 Copynumber: 2.0 Consensus size: 64
6990954 GTGCACATTA
* * *
6990964 GCAATAGAGGACAGCAGAACTCAACCAAAACACCTCACAACCCTTGGGCGAGACACTATTGATG
1 GCAATAGAGGACAGCACAACTCAACCAAAACACCTCACAACACTTGGGCAAGACACTATTGATG
* *
6991028 GCAATA-AGGGACAGCACAACTCAACCAAAGCACCTCACAACACTTGGGCAAGGCACTATTGAT
1 GCAATAGA-GGACAGCACAACTCAACCAAAACACCTCACAACACTTGGGCAAGACACTATTGAT
6991091 CAAGTGTTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
63 1 0.02
64 56 0.98
ACGTcount: A:0.38, C:0.28, G:0.20, T:0.14
Consensus pattern (64 bp):
GCAATAGAGGACAGCACAACTCAACCAAAACACCTCACAACACTTGGGCAAGACACTATTGATG
Found at i:6994297 original size:12 final size:12
Alignment explanation
Indices: 6994257--6994299 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
6994247 CAGCTGCTGC
6994257 CTTCTTTTCCTT
1 CTTCTTTTCCTT
6994269 -TTCCTTTTCCTT
1 CTT-CTTTTCCTT
*
6994281 CTTCTTTTTCTT
1 CTTCTTTTCCTT
6994293 CTTCTTT
1 CTTCTTT
6994300 GCTGCTGCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 2 0.07
12 24 0.86
13 2 0.07
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (12 bp):
CTTCTTTTCCTT
Found at i:7017143 original size:37 final size:37
Alignment explanation
Indices: 7017102--7017184 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
7017092 AAAGAACAAC
* * **
7017102 AAAAAGAAAACAAAAACACGAAAAAAGAGGGAAAAGG
1 AAAAAGAAAAAAAAAACACAAAAAAAGAAAGAAAAGG
*
7017139 AAAAA-AATAAAAAAAATACAAAAAAAGAAAGAAAAGG
1 AAAAAGAA-AAAAAAAACACAAAAAAAGAAAGAAAAGG
7017176 AAAAAGAAA
1 AAAAAGAAA
7017185 CACACAGTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
36 2 0.05
37 35 0.90
38 2 0.05
ACGTcount: A:0.77, C:0.05, G:0.16, T:0.02
Consensus pattern (37 bp):
AAAAAGAAAAAAAAAACACAAAAAAAGAAAGAAAAGG
Found at i:7020578 original size:25 final size:25
Alignment explanation
Indices: 7020531--7020577 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
7020521 ATTAATACTC
7020531 ATAATTTTAAAGATATTTATTTTGA
1 ATAATTTTAAAGATATTTATTTTGA
* *
7020556 ATAATTTTTAA-ATTTTTATTTT
1 ATAATTTTAAAGATATTTATTTT
7020578 TACATCTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (25 bp):
ATAATTTTAAAGATATTTATTTTGA
Found at i:7023678 original size:2 final size:2
Alignment explanation
Indices: 7023671--7023695 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7023661 ATCAATCCCA
7023671 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
7023696 GAATTGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7026560 original size:57 final size:57
Alignment explanation
Indices: 7026492--7026607 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
7026482 GTTCATAAAA
* *
7026492 TGTGACACATTTAGACCTAGAGAATTCAACAGGGGAGCAAGAGGTGGTGCAATCCCT
1 TGTGACACATTTAGAACTAGAGAATTCAACAGGGGAACAAGAGGTGGTGCAATCCCT
7026549 TGTGACACATTTAGAACTAGAGAATTCAACAGGGGAACAAGAGGTGGTGCAATCCCT
1 TGTGACACATTTAGAACTAGAGAATTCAACAGGGGAACAAGAGGTGGTGCAATCCCT
7026606 TG
1 TG
7026608 AAAACTTGTA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22
Consensus pattern (57 bp):
TGTGACACATTTAGAACTAGAGAATTCAACAGGGGAACAAGAGGTGGTGCAATCCCT
Found at i:7032392 original size:93 final size:91
Alignment explanation
Indices: 7032227--7032406 Score: 263
Period size: 93 Copynumber: 2.0 Consensus size: 91
7032217 TTTATACAAA
* *
7032227 ACTTCTCCACCCAGATAAGCTCTAAGGCACGGTACACTGCAAAGTCATTGGTAAATGCAATGTCC
1 ACTTCTCCACCCAGATAAGCTCCAAGGCACGGTAAACTGCAAAGTCATTGGTAAATGCAATGTCC
7032292 TTAATGATCAAGATCAAAGGGATCAG
66 TTAATGATCAAGATCAAAGGGATCAG
* * *
7032318 ACTTCTCCACCCAGATAAGCTACCAAGGTATGG-AAACTGCAAAAAGTCATTGGTGAATGCAATG
1 ACTTCTCCACCCAGATAAGCT-CCAAGGCACGGTAAACTGC--AAAGTCATTGGTAAATGCAATG
* *
7032382 TCCTTCATGATCTAGATCAAAGGGA
63 TCCTTAATGATCAAGATCAAAGGGA
7032407 GCTCATCCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
91 27 0.34
92 8 0.10
93 44 0.56
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (91 bp):
ACTTCTCCACCCAGATAAGCTCCAAGGCACGGTAAACTGCAAAGTCATTGGTAAATGCAATGTCC
TTAATGATCAAGATCAAAGGGATCAG
Found at i:7033595 original size:3 final size:3
Alignment explanation
Indices: 7033587--7033633 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
7033577 ACAATTACAA
*
7033587 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7033634 AGGAACTGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7034725 original size:23 final size:24
Alignment explanation
Indices: 7034699--7034758 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 24
7034689 TTGCTCCTTT
**
7034699 TTTCTTTTTTT-TTTTCTTTTATC
1 TTTCTTTTTTTCTTTTCTTCCATC
*
7034722 TTTCATTCTTTTTCCTTTTCTTCCCTC
1 TTTC-TT-TTTTT-CTTTTCTTCCATC
7034749 TTTCTTTTTT
1 TTTCTTTTTT
7034759 GTTATTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 4 0.13
24 2 0.07
25 9 0.30
26 2 0.07
27 13 0.43
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTCTTTTTTTCTTTTCTTCCATC
Found at i:7036713 original size:58 final size:56
Alignment explanation
Indices: 7036629--7036767 Score: 199
Period size: 58 Copynumber: 2.4 Consensus size: 56
7036619 CTGGTGATGG
7036629 GAGCAAGGAAGAAAGAGAGAAAAAAAGAAAGAAAAGAAGAAGAGCCCACCACCAGA
1 GAGCAAGGAAGAAAGAGAGAAAAAAAGAAAGAAAAGAAGAAGAGCCCACCACCAGA
* * *
7036685 GTGCAAGGAGGAAAGAGAGAAGAAAAAAGAAAGAAAAGAAGAAGAGCCCATCACCAGA
1 GAGCAAGGAAGAAAGAGAG-A-AAAAAAGAAAGAAAAGAAGAAGAGCCCACCACCAGA
* *
7036743 GAGCAA-CAAGGAAGAAGAGAAAAAA
1 GAGCAAGGAAGAAAG-AGAGAAAAAA
7036768 TGGAAAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
56 22 0.30
57 7 0.10
58 44 0.60
ACGTcount: A:0.58, C:0.12, G:0.28, T:0.01
Consensus pattern (56 bp):
GAGCAAGGAAGAAAGAGAGAAAAAAAGAAAGAAAAGAAGAAGAGCCCACCACCAGA
Found at i:7037259 original size:15 final size:15
Alignment explanation
Indices: 7037239--7037288 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
7037229 ACAAGGTTAT
7037239 ATTCCCAACAATCAC
1 ATTCCCAACAATCAC
*
7037254 ATTCCCAACAATCAT
1 ATTCCCAACAATCAC
*
7037269 ATTGCCAACAATCAC
1 ATTCCCAACAATCAC
7037284 ATTCC
1 ATTCC
7037289 TAGTAAAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.38, C:0.36, G:0.02, T:0.24
Consensus pattern (15 bp):
ATTCCCAACAATCAC
Found at i:7039893 original size:23 final size:21
Alignment explanation
Indices: 7039855--7039896 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
7039845 TATGAAAAAA
*
7039855 TTAAAATATTTTTTTATTAAT
1 TTAAAAAATTTTTTTATTAAT
7039876 TTAAAAAATTATTATTTATTA
1 TTAAAAAATT-TT-TTTATTA
7039897 TAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 2 0.11
23 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAAAAAATTTTTTTATTAAT
Found at i:7040168 original size:16 final size:15
Alignment explanation
Indices: 7040120--7040164 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
7040110 TTTTTTTCTT
7040120 TAATTAATAAAAATAA
1 TAATT-ATAAAAATAA
7040136 TAAAATTAT-AAAATAA
1 T--AATTATAAAAATAA
7040152 TAATTATAAAAAT
1 TAATTATAAAAAT
7040165 TAATTAAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 6 0.23
15 5 0.19
16 9 0.35
17 2 0.08
18 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATTATAAAAATAA
Found at i:7040170 original size:13 final size:14
Alignment explanation
Indices: 7040134--7040162 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7040124 TAATAAAAAT
7040134 AATAA-AATTATAA
1 AATAATAATTATAA
7040147 AATAATAATTATAA
1 AATAATAATTATAA
7040161 AA
1 AA
7040163 ATTAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AATAATAATTATAA
Found at i:7043354 original size:3 final size:3
Alignment explanation
Indices: 7043346--7043379 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7043336 TTTTTAATTT
7043346 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7043380 ATATACATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7068868 original size:6 final size:7
Alignment explanation
Indices: 7068851--7068876 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7068841 GATGACCTTC
7068851 TTTTTAA
1 TTTTTAA
7068858 TTTTTAA
1 TTTTTAA
7068865 TTTTTAA
1 TTTTTAA
7068872 TTTTT
1 TTTTT
7068877 GTGTGTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTAA
Found at i:7068901 original size:14 final size:13
Alignment explanation
Indices: 7068851--7068902 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
7068841 GATGACCTTC
7068851 TTTTTAATTTTTAA
1 TTTTTAATTTTT-A
*
7068865 TTTTTAATTTTTG
1 TTTTTAATTTTTA
7068878 TGTGTTT-ATTTTTA
1 T-T-TTTAATTTTTA
7068892 TTTTTATATTT
1 TTTTTA-ATTT
7068903 ATGGGAGTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
12 3 0.09
13 2 0.06
14 24 0.75
15 3 0.09
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (13 bp):
TTTTTAATTTTTA
Found at i:7082808 original size:23 final size:24
Alignment explanation
Indices: 7082777--7082823 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
7082767 GCCTAGTAAA
7082777 ATTTCTAAAATTTAT-ATTATTTT
1 ATTTCTAAAATTTATCATTATTTT
* * *
7082800 ATTTTTAAATTTTATCTTTATTTT
1 ATTTCTAAAATTTATCATTATTTT
7082824 TTAATAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (24 bp):
ATTTCTAAAATTTATCATTATTTT
Found at i:7082832 original size:22 final size:19
Alignment explanation
Indices: 7082793--7082838 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
7082783 AAAATTTATA
7082793 TTAT-TTTATTTTTAAATT
1 TTATCTTTATTTTTAAATT
7082811 TTATCTTTATTTTTTAATAATT
1 TTATCTTTA-TTTTT-A-AATT
7082833 TTATCT
1 TTATCT
7082839 CTTTAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 5 0.21
21 1 0.04
22 10 0.42
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATCTTTATTTTTAAATT
Found at i:7084044 original size:9 final size:9
Alignment explanation
Indices: 7084026--7084057 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
7084016 AGTTGGAAGA
7084026 GAAG-GGAG
1 GAAGAGGAG
7084034 GAAGAGGAG
1 GAAGAGGAG
7084043 GAAGAGGAG
1 GAAGAGGAG
7084052 GAAGAG
1 GAAGAG
7084058 AGAGAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.17
9 19 0.83
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (9 bp):
GAAGAGGAG
Found at i:7087645 original size:2 final size:2
Alignment explanation
Indices: 7087638--7087674 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7087628 TAATCACAAC
7087638 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7087675 TCAATTTATC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7093103 original size:28 final size:28
Alignment explanation
Indices: 7093060--7093127 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
7093050 ATGAATATTT
*
7093060 ATCTAACAAT-TCACTTATTTTAATTAA
1 ATCTAATAATCTCACTTATTTTAATTAA
7093087 ATCTAATAATCTCACTTATTTTAATTAA
1 ATCTAATAATCTCACTTATTTTAATTAA
*
7093115 ATCTAATTATCTC
1 ATCTAATAATCTC
7093128 GTGATAGTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 9 0.24
28 29 0.76
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.46
Consensus pattern (28 bp):
ATCTAATAATCTCACTTATTTTAATTAA
Found at i:7093193 original size:22 final size:25
Alignment explanation
Indices: 7093162--7093211 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
7093152 TTTTTAATAA
7093162 CAAACACTTTT-TTATATTATGA-T
1 CAAACACTTTTATTATATTATGAGT
*
7093185 CAAA-ACTTTTATTATGTTATGAGT
1 CAAACACTTTTATTATATTATGAGT
7093209 CAA
1 CAA
7093212 TGTGAAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (25 bp):
CAAACACTTTTATTATATTATGAGT
Found at i:7094267 original size:225 final size:226
Alignment explanation
Indices: 7094015--7094458 Score: 701
Period size: 225 Copynumber: 2.0 Consensus size: 226
7094005 ACTTAAACCA
* ** *
7094015 TTAATTTTGGGAATCGATTCAATTTAGTCCCTTTCATAGAGTTGATGTCATTGCTGACGTAGCGC
1 TTAATTTTGGAAATCGATTCAATTTAGTCCCTTTCATAGAACTGATGTCATTGCTAACGTAGCGC
* * *
7094080 TAACATAGCACTATCACTTTGACATGTTGATGTGGCAATGCCACATGGCATATCAAGGAGGGCAC
66 TAACATAACACTATCACTTTGACATGTTGATATGGCAATGCCACATGGCATATCAAAGAGGGCAC
* *
7094145 CACGTGTCACACAAGAGAGCGATTTGTGTCTCTTGTTTTTT-TAGAAATATTGTGTGCTTGTTGC
131 CACGCGTCACACAAGAGAGCGATTCGTGTCTCTTGTTTTTTCTAGAAATATTGTGTGCTTGTTGC
* *
7094209 GTTTCAAATCCAGTACCAATTGTTCTAAACT
196 GTTTCAAACCCAATACCAATTGTTCTAAACT
* * * *
7094240 TTAATTTTGGAAATTGATTCAATTTAGTCTCTTTCATAGAACTGATGTTATTGCTAACGTGGCGC
1 TTAATTTTGGAAATCGATTCAATTTAGTCCCTTTCATAGAACTGATGTCATTGCTAACGTAGCGC
* *
7094305 TAACATAACACTATCACTTTGACATGTTGATATGGCAATGTCACATGGCATGTCAAAGAGGGCAC
66 TAACATAACACTATCACTTTGACATGTTGATATGGCAATGCCACATGGCATATCAAAGAGGGCAC
*
7094370 CACGCGTCACACAAGAGAGCGATTCGTGTCTCTTGTTTTTTCTAGAAATATTGTGTGCTTGTTGT
131 CACGCGTCACACAAGAGAGCGATTCGTGTCTCTTGTTTTTTCTAGAAATATTGTGTGCTTGTTGC
* *
7094435 GTTTCGAACCCAATACCACTTGTT
196 GTTTCAAACCCAATACCAATTGTT
7094459 TTATGCTCTT
Statistics
Matches: 198, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
225 156 0.79
226 42 0.21
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (226 bp):
TTAATTTTGGAAATCGATTCAATTTAGTCCCTTTCATAGAACTGATGTCATTGCTAACGTAGCGC
TAACATAACACTATCACTTTGACATGTTGATATGGCAATGCCACATGGCATATCAAAGAGGGCAC
CACGCGTCACACAAGAGAGCGATTCGTGTCTCTTGTTTTTTCTAGAAATATTGTGTGCTTGTTGC
GTTTCAAACCCAATACCAATTGTTCTAAACT
Found at i:7094656 original size:16 final size:15
Alignment explanation
Indices: 7094623--7094664 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7094613 ATTGTTTTTG
*
7094623 TTTCTTTTGTTTCTTC
1 TTTCTTTT-TTCCTTC
7094639 TTTTCTTTTTTCCTTC
1 -TTTCTTTTTTCCTTC
7094655 TTTCTTTTTT
1 TTTCTTTTTT
7094665 ATTTTCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 10 0.42
16 6 0.25
17 8 0.33
ACGTcount: A:0.00, C:0.19, G:0.02, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTTCCTTC
Found at i:7094661 original size:20 final size:20
Alignment explanation
Indices: 7094636--7094673 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7094626 CTTTTGTTTC
7094636 TTCTTTTCTT-TTTTCCTTCT
1 TTCTTTT-TTATTTTCCTTCT
7094656 TTCTTTTTTATTTTCCTT
1 TTCTTTTTTATTTTCCTT
7094674 TTTATCACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (20 bp):
TTCTTTTTTATTTTCCTTCT
Found at i:7095498 original size:5 final size:5
Alignment explanation
Indices: 7095488--7095521 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
7095478 AGGCTAGGGG
7095488 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGA
1 AAGAA AAGAA AAGAA AAGAA AAGAA AAGAA AAGA
7095522 TCAGACATGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:7098579 original size:98 final size:99
Alignment explanation
Indices: 7098420--7098605 Score: 320
Period size: 98 Copynumber: 1.9 Consensus size: 99
7098410 TCATCAATTA
* *
7098420 AACCTTCCATTACAATATTCACACCATAAACTGTTGCATGCTTTCACCCTCTCAATATGATATTA
1 AACCTTCCATTACAATATTCACACCATAAACTGTCGCATACTTTCACCCTCTCAATATGATATTA
7098485 ACCATTCCCATAGCCTCCAAGAACTCATAAACTC
66 ACCATTCCCATAGCCTCCAAGAACTCATAAACTC
* *
7098519 AACCTTCCATTACAATGTTCAC-CCATAAACTGTCGCATACTTTTACCCTCTCAATATGATATTA
1 AACCTTCCATTACAATATTCACACCATAAACTGTCGCATACTTTCACCCTCTCAATATGATATTA
*
7098583 ATCATTCCCATAGCCTCCAAGAA
66 ACCATTCCCATAGCCTCCAAGAA
7098606 AACTTACCCA
Statistics
Matches: 82, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 61 0.74
99 21 0.26
ACGTcount: A:0.33, C:0.31, G:0.06, T:0.30
Consensus pattern (99 bp):
AACCTTCCATTACAATATTCACACCATAAACTGTCGCATACTTTCACCCTCTCAATATGATATTA
ACCATTCCCATAGCCTCCAAGAACTCATAAACTC
Found at i:7103952 original size:18 final size:18
Alignment explanation
Indices: 7103931--7103966 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7103921 ATTTATAATA
*
7103931 TTATAAATATTTATTTTC
1 TTATAAATATTAATTTTC
*
7103949 TTATAACTATTAATTTTC
1 TTATAAATATTAATTTTC
7103967 ATTGTATGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATAAATATTAATTTTC
Found at i:7111533 original size:7 final size:7
Alignment explanation
Indices: 7111521--7111551 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
7111511 CCTCACCTAC
7111521 TTTCTTT
1 TTTCTTT
7111528 TTTCTTT
1 TTTCTTT
7111535 TTTCTTT
1 TTTCTTT
7111542 TTTCTTT
1 TTTCTTT
7111549 TTT
1 TTT
7111552 TCACTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTCTTT
Found at i:7111775 original size:19 final size:20
Alignment explanation
Indices: 7111732--7111775 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7111722 TTATATTTCA
7111732 TCATATTTAATGTATCTCTT
1 TCATATTTAATGTATCTCTT
* *
7111752 T-ATATTTAATTTA-CTTTT
1 TCATATTTAATGTATCTCTT
7111770 TCATAT
1 TCATAT
7111776 CTAAAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 5 0.24
19 15 0.71
20 1 0.05
ACGTcount: A:0.27, C:0.11, G:0.02, T:0.59
Consensus pattern (20 bp):
TCATATTTAATGTATCTCTT
Found at i:7121500 original size:23 final size:23
Alignment explanation
Indices: 7121470--7121519 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
7121460 TTTACCAAAA
7121470 GTCTAGCATTACAAGCACAACGT
1 GTCTAGCATTACAAGCACAACGT
7121493 GTCTAGCATTACAAGCACAACGT
1 GTCTAGCATTACAAGCACAACGT
7121516 GTCT
1 GTCT
7121520 CACCCCAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (23 bp):
GTCTAGCATTACAAGCACAACGT
Found at i:7124338 original size:523 final size:523
Alignment explanation
Indices: 7123354--7124400 Score: 1690
Period size: 523 Copynumber: 2.0 Consensus size: 523
7123344 TTATGTATTC
7123354 GTAATGGATTAACTTTTATATCAATAAGAATGAATGAAAGTTTGCAAACTTTTTTTGGCTATTCA
1 GTAATGGATTAACTTTTATATCAATAAGAATGAATGAAAGTTTGCAAACTTTTTTTGGCTATTCA
* * *
7123419 AATAAAAAAATGGACATAGGTTTCAATGACAATTTCTATGATTAAGACATTTCATAAACAGAACA
66 AACAAAAAAATGGACATAGATTTCAATGACAATTTCTATGATTAAGACATTTCATAAACACAACA
* * * *
7123484 TGACTCGATGGGAAAATGAGTGATATACAAATAAGAATAAAAAAAAATAAAAAATATATATCTAT
131 TAACTCGATGAGAAAATGAGTAATATACAAACAAGAATAAAAAAAAATAAAAAATATATATCTAT
* *
7123549 TATATTTTAACAAATATATTAACTTTAATTATCAATCCTGTACATTGCATGGGGTGAAATCAAAT
196 TATATTTTAACAAATATATTAACTTTAATTATCAAGCCTGTACATTGCATGGGGTCAAATCAAAT
* *
7123614 ATAACCTAAAGAGTAAAACAAAGGCATCAAGCATATCAGATGAAAAGAATTTCAAGGGCAAGTTT
261 ATAACCTAAACAGTAAAACAAAGCCATCAAGCATATCAGATGAAAAGAATTTCAAGGGCAAGTTT
* *
7123679 ATGAAAAGAAATGAACAAAAGTTGACGCACCTATGGTTGAAGGCATCAAGGCTGACACTTTTCCA
326 AAGAAAAGAAATGAACAAAAGTTGACGCACCTATGGTTGAAGGCATCAAGGCTGACAATTTTCCA
7123744 TCCAAAGCTGTATCACTAGGAATAGCTGAAGTTCCATTGAGAGTTGATACCAGTGAGCTATCACT
391 TCCAAAGCTGTATCACTAGGAATAGCTGAAGTTCCATTGAGAGTTGATACCAGTGAGCTATCACT
*
7123809 TTCCTGTTTATCATCCGGAAAATCTTGTGGTGCAGTTTCAAGTCCCATTTCTTCTGCAATAACAT
456 TTCCTGTTTATCATCCGGAAAATCTTGTGGTGCAGTTTCAAGTCCCATTTCTTCTGAAATAACAT
7123874 TTG
521 TTG
*
7123877 GTAATGGATTAACTTTTATATCAATAAGAATGAATGAAAGTTTGCAAACTTTTTTTGGTTATTCA
1 GTAATGGATTAACTTTTATATCAATAAGAATGAATGAAAGTTTGCAAACTTTTTTTGGCTATTCA
**
7123942 AACAAAAAAATGGACATAGATTTCAATGACAATTTCTATGATTAAGACATTTCATAAACACAATG
66 AACAAAAAAATGGACATAGATTTCAATGACAATTTCTATGATTAAGACATTTCATAAACACAACA
* * *
7124007 TAACTTGATGAGAAAATGAGTAATATATAAACAAGGATAAAAGAAAAATAAAAAATATATATCTA
131 TAACTCGATGAGAAAATGAGTAATATACAAACAAGAATAAAA-AAAAATAAAAAATATATATCTA
* * *
7124072 TT-TCATTTT-ACCAATTTATTAACTTTAATTATCTAGCCTGTACATTGCATGGGGTCAAATCAA
195 TTAT-ATTTTAACAAATATATTAACTTTAATTATCAAGCCTGTACATTGCATGGGGTCAAATCAA
*
7124135 ATATAACCTAAACAGTAAAACAAAGCCATCAAGCATATCAGATTAAAAGAATTTCAAGGGCAA-T
259 ATATAACCTAAACAGTAAAACAAAGCCATCAAGCATATCAGATGAAAAGAATTTCAAGGGCAAGT
* * * * * *
7124199 TTGAAGGAAAGAAATGAATAAAAGTTGATGTACCTATGGTTGAAGGCATCATGGTTGACAATTTT
324 TT-AAGAAAAGAAATGAACAAAAGTTGACGCACCTATGGTTGAAGGCATCAAGGCTGACAATTTT
* *
7124264 CCA-CCTAAAGCTGTATCACTAGGAATATCTGAAGTTCCCTTGAGAGTTGATACCAGTGAGCTAT
388 CCATCC-AAAGCTGTATCACTAGGAATAGCTGAAGTTCCATTGAGAGTTGATACCAGTGAGCTAT
* * * *
7124328 CA-TATTCCTGTTTATCATCTGGAAAATCTTGTGGTGCAGTTTCAATTTCTATTTCTTCTGAAAT
452 CACT-TTCCTGTTTATCATCCGGAAAATCTTGTGGTGCAGTTTCAAGTCCCATTTCTTCTGAAAT
7124392 AACATTTG
516 AACATTTG
7124400 G
1 G
7124401 AACCTCAAGC
Statistics
Matches: 483, Mismatches: 36, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
522 6 0.01
523 448 0.93
524 29 0.06
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (523 bp):
GTAATGGATTAACTTTTATATCAATAAGAATGAATGAAAGTTTGCAAACTTTTTTTGGCTATTCA
AACAAAAAAATGGACATAGATTTCAATGACAATTTCTATGATTAAGACATTTCATAAACACAACA
TAACTCGATGAGAAAATGAGTAATATACAAACAAGAATAAAAAAAAATAAAAAATATATATCTAT
TATATTTTAACAAATATATTAACTTTAATTATCAAGCCTGTACATTGCATGGGGTCAAATCAAAT
ATAACCTAAACAGTAAAACAAAGCCATCAAGCATATCAGATGAAAAGAATTTCAAGGGCAAGTTT
AAGAAAAGAAATGAACAAAAGTTGACGCACCTATGGTTGAAGGCATCAAGGCTGACAATTTTCCA
TCCAAAGCTGTATCACTAGGAATAGCTGAAGTTCCATTGAGAGTTGATACCAGTGAGCTATCACT
TTCCTGTTTATCATCCGGAAAATCTTGTGGTGCAGTTTCAAGTCCCATTTCTTCTGAAATAACAT
TTG
Found at i:7125886 original size:22 final size:22
Alignment explanation
Indices: 7125847--7125888 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7125837 TCTTATATTG
**
7125847 TTTCCTTTTTAATTATTTTTTC
1 TTTCCTTTTTAACCATTTTTTC
7125869 TTTCCTTTTTAACCATTTTT
1 TTTCCTTTTTAACCATTTTT
7125889 AATGCAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTCCTTTTTAACCATTTTTTC
Found at i:7131745 original size:21 final size:21
Alignment explanation
Indices: 7131706--7131745 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7131696 TATAAAAATT
**
7131706 TTAATATTTTAATTTTTTTGC
1 TTAATATTTTAATACTTTTGC
*
7131727 TTAATATTTTGATACTTTT
1 TTAATATTTTAATACTTTT
7131746 AAACATATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (21 bp):
TTAATATTTTAATACTTTTGC
Found at i:7132171 original size:12 final size:14
Alignment explanation
Indices: 7132154--7132186 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7132144 AAATATTGAG
7132154 AAATTTT-TAA-AT
1 AAATTTTATAATAT
7132166 AAATTTTATAATAT
1 AAATTTTATAATAT
7132180 AAATTTT
1 AAATTTT
7132187 GTTTAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 3 0.16
14 9 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
AAATTTTATAATAT
Found at i:7132326 original size:22 final size:21
Alignment explanation
Indices: 7132282--7132326 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
7132272 CTTTTAACTC
7132282 AATATTAAAAAATTAAATGTTT
1 AATATTAAAAAATTAAA-GTTT
7132304 AATATTAACAAAAATTAAA-TTT
1 AATATT-A-AAAAATTAAAGTTT
7132326 A
1 A
7132327 TTTTGACTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.48
23 1 0.05
24 10 0.48
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
AATATTAAAAAATTAAAGTTT
Found at i:7133429 original size:253 final size:248
Alignment explanation
Indices: 7132724--7133653 Score: 695
Period size: 252 Copynumber: 3.7 Consensus size: 248
7132714 AATAATTACC
* * * *
7132724 ATTAAAATTTGTAAACTATAAAACACTTTAACCTCG-AAAATAACAATTTAAATGTTTAATTTTT
1 ATTAAAATTTGTAATC-ATAAAACACTTTAAACTTGAAAAATAACAATTTAAATATTTAATTTTT
* * * * *
7132788 AAAAAAATTATATTTATTAGATATAATTAACTCATTACATTAAATCTCACATATTTACGTAAATA
65 TAAAAAATTATATTTATTAGACATAATTAACTTATTACGTTAAATCTCATA-ATTTACGTAAATA
* * * ** *
7132853 TTTTGAAAATGATTGTTCCACCTTTTTAATGTTTT-CTGTTAATTCTT-ATAACTACCGTCAAGG
129 TTTTGAAAAT-ATT-TTTCAACTTTATAATGTTTTGC-GTTAATTCTTCA-ATTTAACGTCAA-G
*
7132916 CTTTTT-AAATACTAATTTTCACCATAATTCATTTTATCCTTACTATTATTCACACATAA
189 CTTTTTCAAATAATAATTTTCACCATAATTCATTTTATCCTTACTATTATTCACACATAA
* * * *
7132975 ATTAAAATTTATAAATCATAAAATACTTTAAA-TTCAATAATAACAATTTAAATATTTAATTTCT
1 ATTAAAATTTGT-AATCATAAAACACTTTAAACTTGAAAAATAACAATTTAAATATTTAATTT-T
* * * *
7133039 CCTT--GAAATTATGTTTATTAGACATAATTCACTTATTACGTTAAATTTCTCAT-ATTTACGTC
64 --TTAAAAAATTATATTTATTAGACATAATTAACTTATTACGTTAAA--TCTCATAATTTACGTA
* * * * * * ** *
7133101 AACATTTTTATAATGTTTCTTCCACTTTTATAATATTTTGCAATAATTCTTACAACTTT-ACATC
125 AATATTTTGAAAATATTT-TTCAAC-TTTATAATGTTTTGCGTTAATTCTT-CAA-TTTAACGTC
* * * *** * * *
7133165 ATAAC-TTTTCAATTAATATTTTTCATTGTAATTCTTTTTATCCTTACTATTATTCACGCATAT
186 A-AGCTTTTTCAAATAATAATTTTCACCATAATTCATTTTATCCTTACTATTATTCACACATAA
* * *
7133228 ATTAAAA-TTGTCAATCATAAAACACTTTAAACTTGAAAATATAAAAAATAAAATATTTAATTTT
1 ATTAAAATTTGT-AATCATAAAACACTTTAAACTTGAAAA-ATAACAATTTAAATATTTAATTTT
* * * * *
7133292 TTAAAAAATTACATTGTTTTA-ACATAATTGACTTGTTACGTTAAATCTCATACATTTACGTTAA
64 TTAAAAAATTATATT-TATTAGACATAATTAACTTATTACGTTAAATCTCATA-ATTTACGTAAA
* *
7133356 TATTTTGACAATACTTATTTCAACTTTATAATGTTTTGCGTTAATTCTTGCCATTTAACGTCAAG
127 TATTTTGAAAATA-TT-TTTCAACTTTATAATGTTTTGCGTTAATTCTT-CAATTTAACGTCAAG
* * * * * * * * *** *
7133421 CTTTTTCAACTACTAAATTTGAACATAACTC-TTTATATCTTTACTATTTTTCTTGCATAG
189 CTTTTTCAAATAATAATTTTCACCATAATTCATTT-TATCCTTACTATTATTCACACATAA
* * * ** **
7133481 ATTAAAATTTGTAAACTGTAAAATACTTTAAA-TTCG-ACCATAACAATTTAAATGCTTAATTTA
1 ATTAAAATTTGTAATC-ATAAAACACTTTAAACTT-GAAAAATAACAATTTAAATATTTAATTT-
* * ** * * ** *
7133544 TCT-AAAAATTATGTTTATTTTACATAATTAACTTGTTACGTTAAATCTCACACATTTATATCAA
63 TTTAAAAAATTATATTTATTAGACATAATTAACTTATTACGTTAAATCTCATA-ATTTACGTAAA
* * * **
7133608 TATTTTGACAATCTTTGTTCCACCTTTATAATGTTTTATGTTAATT
127 TATTTTGAAAATATTT-TT-CAACTTTATAATGTTTTGCGTTAATT
7133654 NNNNNNNNNN
Statistics
Matches: 538, Mismatches: 107, Indels: 67
0.76 0.15 0.09
Matches are distributed among these distances:
250 3 0.01
251 68 0.13
252 211 0.39
253 197 0.37
254 58 0.11
255 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (248 bp):
ATTAAAATTTGTAATCATAAAACACTTTAAACTTGAAAAATAACAATTTAAATATTTAATTTTTT
AAAAAATTATATTTATTAGACATAATTAACTTATTACGTTAAATCTCATAATTTACGTAAATATT
TTGAAAATATTTTTCAACTTTATAATGTTTTGCGTTAATTCTTCAATTTAACGTCAAGCTTTTTC
AAATAATAATTTTCACCATAATTCATTTTATCCTTACTATTATTCACACATAA
Found at i:7133601 original size:252 final size:251
Alignment explanation
Indices: 7132724--7134296 Score: 1042
Period size: 253 Copynumber: 6.2 Consensus size: 251
7132714 AATAATTACC
* * * *
7132724 ATTAAAATTTGTAAACTATAAAACACTTTAACCTCGAAAATAACAATTTAAATGTTTAATTTTTA
1 ATTAAAATTTGTAAACTATAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCTC
* * * * * ** * * *
7132789 AAAAAATTATATTTATTAGATATAATTAACTCATTACATTAAATCTCACATATTTACGTAAATAT
66 TAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAATAT
* * * * ** * *
7132854 TTTGAAAATGA-TTGTTCCACCTTTTTAATGTTTTCTGTTAATTCTTA-TAACTACCGTCA-AGG
131 TTTGACAAT-ACTT-TTTCACCTTTATAATGTTTTC-GTTAATTCTTACCATTTAACGTCATA-A
* * ** * * *
7132916 CTTTTT-AAATACTAATTTTCACCATAATTCATTT-TATCCTTACTATTATTCACACATAA
192 CTTTTTCAACTACTAAATTTCAATATAATTC-TTTATATCTTTACTATTATTCACGCATAG
* * * * *
7132975 ATTAAAATTTATAAA-TCATAAAATACTTTAAATTCAATAATAACAATTTAAATATTTAATTTCT
1 ATTAAAATTTGTAAACT-ATAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCT
** * * * * * * * * * *
7133039 CCTTGAAATTATGTTTATTAGACATAATTCACTTATTACGTTAAATTTCTCATATTTACGTCAAC
65 -CTAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAAT
* * * * * ** * *
7133104 ATTTTTATAAT-GTTTCTTCCACTTTTATAATATTTTGCAATAATTCTTACAACTTT-ACATCAT
129 ATTTTGACAATACTTT-TT-CACCTTTATAATGTTTT-CGTTAATTCTTACCA-TTTAACGTCAT
* * ** * * * * *
7133167 AAC-TTTTCAATTAATATTTTTCATTGTAATTCTTTTTATCCTTACTATTATTCACGCATAT
190 AACTTTTTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCACGCATAG
* * * * * *
7133228 ATTAAAA-TTGTCAA-TCATAAAACACTTTAAACTTGAAAATATAAAAAATAAAATATTTAATTT
1 ATTAAAATTTGTAAACT-ATAAAACACTTTAAAC-TCAAAA-ATAACAATTTAAATGTTTAATTT
* ** * * * *
7133291 -TTTAAAAAATTACATTGT-TTTAACATAATTGACTTGTTACGTTAAATCTCATACATTTACGTT
63 CTCT-AAAAATTATGTT-TATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATT
* *
7133354 AATATTTTGACAATACTTATTTCAACTTTATAATGTTTTGCGTTAATTCTTGCCATTTAACGTCA
126 AATATTTTGACAATACTT-TTTCACCTTTATAATGTTTT-CGTTAATTCTTACCATTTAACGTCA
* * * * * **
7133419 -AGCTTTTTCAACTACTAAATTTGAACATAACTCTTTATATCTTTACTATTTTTCTTGCATAG
189 TAACTTTTTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCACGCATAG
* * * * ** * *
7133481 ATTAAAATTTGTAAACTGTAAAATACTTTAAATTCGACCATAACAATTTAAATGCTTAATTTATC
1 ATTAAAATTTGTAAACTATAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCTC
* * * * *
7133546 TAAAAATTATGTTTATTTTACATAATTAACTTGTTACGTTAAATCTCACACATTTATATCAATAT
66 TAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAATAT
* **
7133611 TTTGACAAT-CTTTGTTCCACCTTTATAATGTTTTATGTTAATTNNNNNNNNNNTACATTAATTA
131 TTTGACAATACTTT-TT-CACCTTTATAATGTTTT-CGTTAA-T----------T-C-TT-ACCA
* * *
7133675 TTATAGTTTTACGTCATAAC-TTTTCAACTGA-TAATTTTCATTATAATT-TTTTTATCTTTACT
179 TT-TA-----ACGTCATAACTTTTTCAACT-ACTAAATTTCAATATAATTCTTTATATCTTTACT
*
7133737 ATTATTCACGCATAC
237 ATTATTCACGCATAG
* * * * * *
7133752 ATTAAAATTTATCAGC-AGTAAAACACTTTCAACTCAAAAATAAAAATTTAAATGTTTAATTTTT
1 ATTAAAATTTGTAAACTA-TAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCT
* * * * *
7133816 CTAAAAAATGTGTTTCTTTGATATAATTGACTTGTTACATTAAATCTCATACATTTACATTAATA
65 CTAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAATA
* * * * * *
7133881 TTTT-AGCAATACTTGTTCTACCTGTATAA-----T-G----TT-TTACCATTTTACATCA-CAG
130 TTTTGA-CAATACTTTTTC-ACCTTTATAATGTTTTCGTTAATTCTTACCATTTAACGTCATAAC
* * * **
7133933 TTTTTCACCTACTAAATTTCAATATAACTATTTATATGC-TTACTATTATTCTTGCATAG
193 TTTTTCAACTACTAAATTTCAATATAATTCTTTATAT-CTTTACTATTATTCACGCATAG
* * * * *
7133992 ATTATAATTTGTAAGTCTAT-AAACATTTTAAACTCAAGAATAACAATTTAAATGCTTAATTTCT
1 ATTAAAATTTGTAA-ACTATAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCT
* * * *
7134056 CTAAAAATTATGTTTATTTGACATGATTGACATGTTATATTAAATCTCACATATTTACATTAATA
65 CTAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAATA
* * * * * *
7134121 TTTTGATAATGCTTATTCCACCTTTTATAATATTTTATGTTAATTCTTATCACTTT-ACGTCA-A
130 TTTTGACAATACTT-TTTCACC-TTTATAATGTTTT-CGTTAATTCTTACCA-TTTAACGTCATA
* * * * ***
7134184 AATTTTTGAATTACTAAATTTCAATATAATTCTTTGTATCTTTACTATTATTGTTGCATAG
191 ACTTTTTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCACGCATAG
* **
7134245 ATTAAAATTTGTAAGCCGTAAAACACTTTAAACT-AAAGAATAACAATTTAAA
1 ATTAAAATTTGTAAACTATAAAACACTTTAAACTCAAA-AATAACAATTTAAA
7134297 ATTTATCAAA
Statistics
Matches: 1033, Mismatches: 213, Indels: 150
0.74 0.15 0.11
Matches are distributed among these distances:
238 2 0.00
239 27 0.03
240 141 0.14
241 12 0.01
242 1 0.00
244 1 0.00
245 4 0.00
246 3 0.00
248 1 0.00
249 1 0.00
250 3 0.00
251 63 0.06
252 226 0.22
253 302 0.29
254 49 0.05
255 2 0.00
259 1 0.00
263 1 0.00
264 2 0.00
265 2 0.00
266 4 0.00
267 2 0.00
270 2 0.00
271 148 0.14
272 30 0.03
273 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.44
Consensus pattern (251 bp):
ATTAAAATTTGTAAACTATAAAACACTTTAAACTCAAAAATAACAATTTAAATGTTTAATTTCTC
TAAAAATTATGTTTATTTGACATAATTGACTTGTTACATTAAATCTCACACATTTACATTAATAT
TTTGACAATACTTTTTCACCTTTATAATGTTTTCGTTAATTCTTACCATTTAACGTCATAACTTT
TTCAACTACTAAATTTCAATATAATTCTTTATATCTTTACTATTATTCACGCATAG
Found at i:7134101 original size:511 final size:506
Alignment explanation
Indices: 7132910--7134165 Score: 1206
Period size: 511 Copynumber: 2.5 Consensus size: 506
7132900 ATAACTACCG
* * * * * ***
7132910 TCAAGGCTTTTT-AAATACTAATTTTCACCATAATTCATTT-TATCCTTACTATTATTCACACAT
1 TCAA-GCTTTTTCAACTACTAAATTTCAACATAACT-ATTTATATCTTTACTATTATTCTTGCAT
* * * * **
7132973 AAATTAAAATTTATAAA-TCATAAAATACTTTAAATTCAATAATAACAATTTAAATATTTAATTT
64 AGATTAAAATTTGTAAACT-ATAAAATA-TTTAAACTCAACAATAACAATTTAAATGCTTAATTT
* ** * * * * * * * * *
7133037 CTCCTTGAAATTATGTTTATTAGACATAATTCACTTATTACGTTAAATTTCTCATATTTACGTCA
127 AT-CTAAAAATTATGTTTATTTGACATAATTAACATGTTACATTAAATCTCACACATTTACATCA
* * * * * * * *
7133102 ACATTTTTATAATGTTTCTTCCA-CTTTTATAATA-TTT-TG-CAA--TA-ATT-CTTA-CA-A-
191 ATATTTTGACAATGCTTATTCCACCTTTTATAATATTTTATGTTAATTTACATTAATTATTATAG
* * * *
7133156 CTTTACATCATAACTTTTCAATTAATATTTTTCATTGTAATTCTTTTTATCCTTACTATTATTCA
256 TTTTACATCATAACTTTTCAACTAATAATTTTCATTATAATTCTTTTTATCCTTACTATTATTCA
* * * *
7133221 CGCATATATTAAAATTGTCAATCATAAAACACTTTAAACTTGAAAATATAAAAAATAAAATATTT
321 CGCATACATTAAAATTATCAAGCATAAAACACTTTAAACTTCAAAATATAAAAAATAAAATATTT
*
7133286 AATTTTTTAAAAAATTACATTGTTTTAACATAATTGACTTGTTACGTTAAATCTCATACATTTAC
386 AATTTTTTAAAAAATTA-ATTGTTTTAACATAATTGACTTGTTACATTAAATCTCATACATTTAC
* * *
7133351 GTTAATATTTTGACAATACTTATTTCAACTTTATAATGTTTTGCGTTAATTCTTGCCATTTAACG
450 ATTAATATTTTGACAATACTTATTTCAACTGTATAATG-TTT--GTTAA----T-CCATTTAACA
* * *
7133416 TCAAGCTTTTTCAACTACTAAATTTGAACATAACTCTTTATATCTTTACTATTTTTCTTGCATAG
1 TCAAGCTTTTTCAACTACTAAATTTCAACATAACTATTTATATCTTTACTATTATTCTTGCATAG
* * * *
7133481 ATTAAAATTTGTAAACTGTAAAATACTTTAAATTCGACCATAACAATTTAAATGCTTAATTTATC
66 ATTAAAATTTGTAAACTATAAAATA-TTTAAACTCAACAATAACAATTTAAATGCTTAATTTATC
* * * *
7133546 TAAAAATTATGTTTATTTTACATAATTAACTTGTTACGTTAAATCTCACACATTTATATCAATAT
130 TAAAAATTATGTTTATTTGACATAATTAACATGTTACATTAAATCTCACACATTTACATCAATAT
* *
7133611 TTTGACAAT-CTTTGTTCCACC-TTTATAATGTTTTATGTTAATTNNNNNNNNNNTACATTAATT
195 TTTGACAATGC-TTATTCCACCTTTTATAATATTTTATGTTAATT----------TACATTAATT
* * *
7133674 ATTATAGTTTTACGTCATAACTTTTCAACTGATAATTTTCATTATAATT-TTTTTATCTTTACTA
249 ATTATAGTTTTACATCATAACTTTTCAACTAATAATTTTCATTATAATTCTTTTTATCCTTACTA
* *
7133738 TTATTCACGCATACATTAAAATTTATC-AGCAGTAAAACACTTTCAAC-TCAAAA-ATAAAAATT
314 TTATTCACGCATACATTAAAA-TTATCAAGCA-TAAAACACTTTAAACTTCAAAATATAAAAAAT
* * * * *
7133800 TAAATGTTTAATTTTTCTAAAAAATGT-GTT-TCTTTGATATAATTGACTTGTTACATTAAATCT
377 AAAATATTTAATTTTT-TAAAAAAT-TAATTGT-TTTAACATAATTGACTTGTTACATTAAATCT
* *
7133863 CATACATTTACATTAATATTTT-AGCAATACTT-GTTCTACCTGTATAATG-TT-TT-A-CCATT
439 CATACATTTACATTAATATTTTGA-CAATACTTATTTC-AACTGTATAATGTTTGTTAATCCATT
*
7133922 TTACA
502 TAACA
* *
7133927 TCACAG-TTTTTCACCTACTAAATTTCAATATAACTATTTATATGC-TTACTATTATTCTTGCAT
1 TCA-AGCTTTTTCAACTACTAAATTTCAACATAACTATTTATAT-CTTTACTATTATTCTTGCAT
* * *
7133990 AGATTATAATTTGTAAGTCTATAAACAT-TTTAAACTCAAGAATAACAATTTAAATGCTTAATTT
64 AGATTAAAATTTGTAA-ACTATAAA-ATATTTAAACTCAACAATAACAATTTAAATGCTTAATTT
* * * * * *
7134054 CTCTAAAAATTATGTTTATTTGACATGATTGACATGTTATATTAAATCTCACATATTTACATTAA
127 ATCTAAAAATTATGTTTATTTGACATAATTAACATGTTACATTAAATCTCACACATTTACATCAA
*
7134119 TATTTTGATAATGCTTATTCCACCTTTTATAATATTTTATGTTAATT
192 TATTTTGACAATGCTTATTCCACCTTTTATAATATTTTATGTTAATT
7134166 CTTATCACTT
Statistics
Matches: 622, Mismatches: 90, Indels: 70
0.80 0.12 0.09
Matches are distributed among these distances:
505 86 0.14
506 99 0.16
507 3 0.00
508 2 0.00
511 183 0.29
512 31 0.05
513 2 0.00
517 1 0.00
518 2 0.00
520 2 0.00
521 5 0.01
522 8 0.01
523 92 0.15
524 51 0.08
525 55 0.09
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (506 bp):
TCAAGCTTTTTCAACTACTAAATTTCAACATAACTATTTATATCTTTACTATTATTCTTGCATAG
ATTAAAATTTGTAAACTATAAAATATTTAAACTCAACAATAACAATTTAAATGCTTAATTTATCT
AAAAATTATGTTTATTTGACATAATTAACATGTTACATTAAATCTCACACATTTACATCAATATT
TTGACAATGCTTATTCCACCTTTTATAATATTTTATGTTAATTTACATTAATTATTATAGTTTTA
CATCATAACTTTTCAACTAATAATTTTCATTATAATTCTTTTTATCCTTACTATTATTCACGCAT
ACATTAAAATTATCAAGCATAAAACACTTTAAACTTCAAAATATAAAAAATAAAATATTTAATTT
TTTAAAAAATTAATTGTTTTAACATAATTGACTTGTTACATTAAATCTCATACATTTACATTAAT
ATTTTGACAATACTTATTTCAACTGTATAATGTTTGTTAATCCATTTAACA
Found at i:7134626 original size:22 final size:20
Alignment explanation
Indices: 7134585--7134627 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
7134575 AAAATTAAAT
**
7134585 ATTTAAATTTTTATTTTTGA
1 ATTTAAATTTTTATCGTTGA
7134605 ATTTAAAGTGTTTTATCGTTGA
1 ATTTAAA-T-TTTTATCGTTGA
7134627 A
1 A
7134628 AAATTTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
22 11 0.58
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (20 bp):
ATTTAAATTTTTATCGTTGA
Found at i:7135190 original size:252 final size:251
Alignment explanation
Indices: 7134302--7135670 Score: 1258
Period size: 252 Copynumber: 5.5 Consensus size: 251
7134292 TTAAAATTTA
* *
7134302 TCAAATAAATATAATTTTTTG-AAAAATGAAACATTTAAATTATTATTCTTGAGTTTAAAGTATT
1 TCAAATAAATATAA-TTTTTGAAAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTT
* * * * * * ** * *
7134366 TGACAGTTTACAATTTTTGATTTATGCAAGAATAATAGTAAGGATATAAAGAATTATA-TTAAAA
65 TTACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTA-AGTGAAAA
* * ** * * * * *
7134430 TTTAGTCA-TTGAAAA-TTTTAACGTAAAA-TAGTAAAAATTAACGTAAAACATTATAAATGTGG
129 -TTAAT-ATTTAAAAAGCCTTGATGTAAAACTA-TAAGAATTAACGTAAAACATTATAAAAGTGA
* * * * ** *
7134492 AATAAGCATTGTTAAAATATTGACGTAAATGTATAAGATTTAATGTAA-AATATCAATTATA
191 AACAAGCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGT-AATTATG
* * ** * * * * *
7134553 TGAAAGAAGCATAA-TTTTCAGAAAAATTAAATATTTAAATTTTTATTTTTGAATTTAAAGTGTT
1 TCAAATAAATATAATTTTTGA-AAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTT
* * * * *
7134617 TTATC-G-TTGAAAAATTTTAATGTATGCGTGAATAATAGTAAAGATAAAAAGAATTATGATTAA
65 TTA-CGGCTT-ACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTAAG-TGAA
* * * * * * ** * *
7134680 AATGATTAGTTGAAAAGTCATGACATAAAACTATAAGAATTAACGTAAAATATTAT-AAAGATGC
127 AATTAATATTTAAAAAGCCTTGATGTAAAACTATAAGAATTAACGTAAAACATTATAAAAG-TGA
* * * * * *
7134744 AACAATG-ATTGTTAAAGTATTGATGTAAATATGTGAGATTTAATATAACAAGTTAATTATG
191 AACAA-GCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGTAATTATG
* * *
7134805 TCAAATAAATATTA-TTTT-AAAAAATTAAATATTTAAATTGTTATTC-TGAAGTTTAAAGT-TT
1 TCAAATAAATATAATTTTTGAAAAAATTAAACATTTAAATTATTATTCTTG-AGTTTAAAGTGTT
* * *
7134866 TTACGGTTTACTAATTTTAATCTATGCATGAATAATAGTAAGGATAAAAAGAATTACAGTGAAAA
65 TTACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTA-AGTGAAAA
* * * * *
7134931 ATAATATTTAAAAAGCCTTAATGTAAAACGATTAGAATTAACGTAAAACATTATAAAAGTGGAAC
129 TTAATATTTAAAAAGCCTTGATGTAAAACTATAAGAATTAACGTAAAACATTATAAAAGTGAAAC
* *
7134996 AAGCATTTTTAAAATATTGATGTAAATGTGTAATATTTAATATAACAAGGTAATTATG
194 AAGCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGTAATTATG
** * * *
7135054 TTTAATAAACATAATTTTTGAAAAAATTAAACATTCAAATTGTTATTCTTGAGTTTAAAGTGTTT
1 TCAAATAAATATAATTTTTGAAAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTTT
* *
7135119 TACGGCTTACAAATTTTAATCTATGCGTGAATAATTGTAAGGATAAAAAGAATTACAGTGAAAAC
66 TACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTA-AGTGAAAAT
* ** * * * * *
7135184 TAATATTTAAAAAGCCTTGATATAAAGTTATAAGAACTAATGTAAAATATTATAAAGGTGAAATA
130 TAATATTTAAAAAGCCTTGATGTAAAACTATAAGAATTAACGTAAAACATTATAAAAGTGAAACA
* * * * * *
7135249 AGTATTTTCAAAATATTTACGTAAATGTGTAAAATTTAACATAACAA-GTCAATTATA
195 AGCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGT-AATTATG
* *** * * * *
7135306 TCTAATAAATATAATTTTTTTTAAAATTAAATATTTATATTATTATTCTTGAGTTTGAAGTATTT
1 TCAAATAAATATAATTTTTGAAAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTTT
* * * * * *
7135371 AACGACTTATAAATTTTAATCTATGCTTGAATAATAGTGAGAATAAAAAGAATTAAGGTGAAAAT
66 TACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTAA-GTGAAAAT
* * * * ** *
7135436 TCATATTTAAAAAGCCTTGGTGTAAAGCGATAAGAATTAACAAAAAACATTATAAAGGTGAAACA
130 TAATATTTAAAAAGCCTTGATGTAAAACTATAAGAATTAACGTAAAACATTATAAAAGTGAAACA
* * * * * * * *
7135501 AACATTTTCAAAATATTGACGTAAGTGTGTGAGATTTAACAAAACAAGTTAATTAAG
195 AGCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGTAATTATG
* * * * * *
7135558 TCAAATAAATATAATTTTTAAAAAAATTATACAATTAAATTTTTATTCTTAAGTTTAAAGTGATT
1 TCAAATAAATATAATTTTTGAAAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTTT
** * * * * * *
7135623 TAAAGCTTATAAATTTTAATTTATACGTAAATAACAGTAAAGATAAAA
66 TACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAA
7135671 TGATATGGTA
Statistics
Matches: 922, Mismatches: 171, Indels: 49
0.81 0.15 0.04
Matches are distributed among these distances:
248 2 0.00
249 165 0.18
250 48 0.05
251 142 0.15
252 558 0.61
253 7 0.01
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (251 bp):
TCAAATAAATATAATTTTTGAAAAAATTAAACATTTAAATTATTATTCTTGAGTTTAAAGTGTTT
TACGGCTTACAAATTTTAATCTATGCGTGAATAATAGTAAGGATAAAAAGAATTAAGTGAAAATT
AATATTTAAAAAGCCTTGATGTAAAACTATAAGAATTAACGTAAAACATTATAAAAGTGAAACAA
GCATTTTTAAAATATTGACGTAAATGTGTAAGATTTAATATAACAAGGTAATTATG
Done.