Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397255.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_44.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14367614
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 51264 characters in sequence are not A, C, G, or T
File 16 of 31
Found at i:8032410 original size:15 final size:15
Alignment explanation
Indices: 8032390--8032421 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8032380 CTTAAGCTCC
8032390 AACACCATTAAATAT
1 AACACCATTAAATAT
*
8032405 AACACCATTGAATAT
1 AACACCATTAAATAT
8032420 AA
1 AA
8032422 ATAATAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.25
Consensus pattern (15 bp):
AACACCATTAAATAT
Found at i:8033294 original size:3 final size:3
Alignment explanation
Indices: 8033286--8033315 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8033276 AAATCAATAG
8033286 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8033316 GGTTGCGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8033587 original size:2 final size:2
Alignment explanation
Indices: 8033575--8033605 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
8033565 TGAAACAGAT
8033575 TA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
8033606 CACAGTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8041357 original size:33 final size:33
Alignment explanation
Indices: 8041312--8041389 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
8041302 AAATCATATT
* *
8041312 TTTTTAATTTTTTATTATAATCTTATACATTTTA
1 TTTTT-ATTTTTTAATATAATCTTATACATTATA
* * *
8041346 TTTTTATTTTTTAATATAATTTTCTATATTATA
1 TTTTTATTTTTTAATATAATCTTATACATTATA
8041379 TATTTTATTTT
1 T-TTTTATTTT
8041390 ATTTTTTTCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 24 0.63
34 14 0.37
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (33 bp):
TTTTTATTTTTTAATATAATCTTATACATTATA
Found at i:8046539 original size:218 final size:217
Alignment explanation
Indices: 8046143--8046571 Score: 488
Period size: 218 Copynumber: 2.0 Consensus size: 217
8046133 AGTAGTTCAG
8046143 ATTTCACCACTGTTTTCCTTTGCAACAATTTACAAACAAAGACTTTCATTGTATATGAAATGAAC
1 ATTTCACCACTGTTTTCCTTTGCAACAATTTACAAACAAAGACTTTCATTGTATATGAAA-GAAC
* * * * * * * * * **
8046208 CATACCCACACTAGTTTTCAGAATGACGCTCTAACTCCATAATTGTTCATAGGGATGGTAATGGC
65 CATACCCAAACCAATTTCCAAAACGACGCCCTAACTCCACAATTGTCCATAAAGATGGTAATGGC
** * * * * *
8046273 TGCCCGTGAGTATTTAACCCATATATGGTTTGAGTACATTATATTCAGATTTGGGATTG-GTTCG
130 TGCCCGTGAGTATCCAACCCATATAGGGTTTGAGTACACTACATTCAGATTTGAGA-TGAGTTCA
8046337 AGTAGAAATTTTACTACCTATAAA
194 AGTAGAAATTTTACTACCTATAAA
* * *
8046361 ATTTCATCATTGTTTTCCTTTGCAACAATTTCCAAACAAAGACTTTCACTT-TATATAGAGCAA-
1 ATTTCACCACTGTTTTCCTTTGCAACAATTTACAAACAAAGACTTTCA-TTGTATAT-GA--AAG
* * * *
8046424 AACC-TATCCAAACCAATTTCCAAAACGATGCCCTAACTCCACATTTGTCCATAAAGATGGTTAT
62 AACCATACCCAAACCAATTTCCAAAACGACGCCCTAACTCCACAATTGTCCATAAAGATGGTAAT
* * *** * *
8046488 GGGTGCCTGTGAGTATCCAACTTGTATAGGGTTTGGGTATACTACATTCAGATTTGAGATGAGTT
127 GGCTGCCCGTGAGTATCCAACCCATATAGGGTTTGAGTACACTACATTCAGATTTGAGATGAGTT
8046553 CAAGTAGAAATTTTACTAC
192 CAAGTAGAAATTTTACTAC
8046572 TTATCTTGGG
Statistics
Matches: 174, Mismatches: 32, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
217 2 0.01
218 162 0.93
219 8 0.05
221 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (217 bp):
ATTTCACCACTGTTTTCCTTTGCAACAATTTACAAACAAAGACTTTCATTGTATATGAAAGAACC
ATACCCAAACCAATTTCCAAAACGACGCCCTAACTCCACAATTGTCCATAAAGATGGTAATGGCT
GCCCGTGAGTATCCAACCCATATAGGGTTTGAGTACACTACATTCAGATTTGAGATGAGTTCAAG
TAGAAATTTTACTACCTATAAA
Found at i:8046911 original size:35 final size:35
Alignment explanation
Indices: 8046870--8046941 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
8046860 ATCTTTTCTC
* *
8046870 CTCCTTCCATCTTTTCTTTCCGTCCTCAATCACTT
1 CTCCTTCCATCTTTTCTTTCCATCCTCAATCAATT
* * *
8046905 CTCCTTCCCTTTTTTCTTTCCATCCTCGATCAATT
1 CTCCTTCCATCTTTTCTTTCCATCCTCAATCAATT
8046940 CT
1 CT
8046942 TTTTTTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.11, C:0.39, G:0.03, T:0.47
Consensus pattern (35 bp):
CTCCTTCCATCTTTTCTTTCCATCCTCAATCAATT
Found at i:8048718 original size:2 final size:2
Alignment explanation
Indices: 8048711--8048736 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8048701 TTCTTTAACG
8048711 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8048737 TGTCTGGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8049685 original size:2 final size:2
Alignment explanation
Indices: 8049678--8049706 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8049668 ATTAAGTCAT
8049678 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8049707 ACCTTAGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8050934 original size:6 final size:6
Alignment explanation
Indices: 8050923--8050968 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
8050913 AAATGAAACA
* * * *
8050923 CTCTTT CTCTTT CTTTCT TTCTCT CTCTCT CTCTCT CTCTCT CTCT
1 CTCTCT CTCTCT CTCTCT CTCTCT CTCTCT CTCTCT CTCTCT CTCT
8050969 TCGAGCGGGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (6 bp):
CTCTCT
Found at i:8050949 original size:4 final size:4
Alignment explanation
Indices: 8050923--8050968 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
8050913 AAATGAAACA
* * * *
8050923 CTCT TTCT CTTT CTTT CTTT CTCT CTCT CTCT CTCT CTCT CTCT CT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CT
8050969 TCGAGCGGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (4 bp):
CTCT
Found at i:8051320 original size:3 final size:3
Alignment explanation
Indices: 8051314--8051340 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8051304 TGTCTCTTTG
8051314 CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT
8051341 TGTTCTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:8062847 original size:19 final size:19
Alignment explanation
Indices: 8062823--8062860 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8062813 AGGGACAATT
8062823 TAATGGAACTTAAATTTCA
1 TAATGGAACTTAAATTTCA
8062842 TAATGGAACTTAAATTTCA
1 TAATGGAACTTAAATTTCA
8062861 CAAGGCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (19 bp):
TAATGGAACTTAAATTTCA
Found at i:8064237 original size:2 final size:2
Alignment explanation
Indices: 8064230--8064275 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
8064220 AGCATATGTT
8064230 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8064270 TA TA TA
1 TA TA TA
8064276 ATAAGTCCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8070771 original size:18 final size:19
Alignment explanation
Indices: 8070748--8070783 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8070738 TTGTTTTGTG
8070748 ATTTTA-TTTTCTTTAATT
1 ATTTTACTTTTCTTTAATT
*
8070766 ATTTTACTTTTTTTTAAT
1 ATTTTACTTTTCTTTAAT
8070784 AATCCATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (19 bp):
ATTTTACTTTTCTTTAATT
Found at i:8075265 original size:2 final size:2
Alignment explanation
Indices: 8075258--8075288 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8075248 AATATGAAAC
8075258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8075289 CGTTTCATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8075435 original size:19 final size:20
Alignment explanation
Indices: 8075387--8075426 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8075377 TACGTTTAAC
8075387 ATAATTAAATAATAATATTT
1 ATAATTAAATAATAATATTT
8075407 ATAATTAAAT-ATAAT-TTT
1 ATAATTAAATAATAATATTT
8075425 AT
1 AT
8075427 TATTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
19 5 0.25
20 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAATTAAATAATAATATTT
Found at i:8077472 original size:2 final size:2
Alignment explanation
Indices: 8077465--8077507 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
8077455 GATTGAAAGA
8077465 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8077506 AT
1 AT
8077508 TCAAAAAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8080085 original size:7 final size:8
Alignment explanation
Indices: 8080062--8080094 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
8080052 TCAATTTGTA
8080062 TTATTATTT
1 TTATT-TTT
8080071 TTATTTTT
1 TTATTTTT
8080079 TTATTTTT
1 TTATTTTT
8080087 TTATTTTT
1 TTATTTTT
8080095 ATTCTATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 19 0.79
9 5 0.21
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (8 bp):
TTATTTTT
Found at i:8080256 original size:21 final size:21
Alignment explanation
Indices: 8080232--8080272 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8080222 TGTCTTTCTG
* *
8080232 TTTTCTGTTATTTAAATTTTA
1 TTTTCTATGATTTAAATTTTA
*
8080253 TTTTTTATGATTTAAATTTT
1 TTTTCTATGATTTAAATTTT
8080273 TAAAAATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTCTATGATTTAAATTTTA
Found at i:8087741 original size:2 final size:2
Alignment explanation
Indices: 8087734--8087770 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
8087724 GAAAAAGAGA
8087734 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8087771 CACAAGAGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8088980 original size:18 final size:18
Alignment explanation
Indices: 8088954--8089017 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
8088944 ACATGTTTAA
*
8088954 TTAATTGTGTTATCATGT
1 TTAAATGTGTTATCATGT
* *
8088972 TTAAATGTGTAAACATGT
1 TTAAATGTGTTATCATGT
* *
8088990 TT-AATCATATTATCATGT
1 TTAAAT-GTGTTATCATGT
*
8089008 TTAAACGTGT
1 TTAAATGTGT
8089018 ATACGTAACA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
17 3 0.09
18 29 0.85
19 2 0.06
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (18 bp):
TTAAATGTGTTATCATGT
Found at i:8089210 original size:16 final size:16
Alignment explanation
Indices: 8089168--8089213 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8089158 CTAATTTTGA
8089168 ATTTTATTTTGTTA-T
1 ATTTTATTTTGTTATT
* *
8089183 ATTTAATGTTGTTATT
1 ATTTTATTTTGTTATT
*
8089199 ATTTTGTTTTGTTAT
1 ATTTTATTTTGTTAT
8089214 AATTGTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.70
Consensus pattern (16 bp):
ATTTTATTTTGTTATT
Found at i:8099389 original size:2 final size:2
Alignment explanation
Indices: 8099382--8099416 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8099372 TTCAGCTTGG
8099382 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8099417 GCAAAGCACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8108784 original size:24 final size:24
Alignment explanation
Indices: 8108757--8108802 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8108747 ATTTATTTTC
*
8108757 TTTTT-AAAATGAAAATTGGGTAA
1 TTTTTGAAAATGAAAAGTGGGTAA
* *
8108780 TTTTTGAAATTGCAAAGTGGGTA
1 TTTTTGAAAATGAAAAGTGGGTA
8108803 GTGGGCAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.37, C:0.02, G:0.22, T:0.39
Consensus pattern (24 bp):
TTTTTGAAAATGAAAAGTGGGTAA
Found at i:8123071 original size:29 final size:30
Alignment explanation
Indices: 8122961--8123062 Score: 197
Period size: 30 Copynumber: 3.4 Consensus size: 30
8122951 TACCTAGATA
8122961 ATTTTTTGAAAAAA-ACTCTCATTCGTAAG
1 ATTTTTTGAAAAAAGACTCTCATTCGTAAG
8122990 ATTTTTTGAAAAAAGACTCTCATTCGTAAG
1 ATTTTTTGAAAAAAGACTCTCATTCGTAAG
8123020 ATTTTTTGAAAAAAGACTCTCATTCGTAAG
1 ATTTTTTGAAAAAAGACTCTCATTCGTAAG
8123050 ATTTTTTGAAAAA
1 ATTTTTTGAAAAA
8123063 TCTCATCATC
Statistics
Matches: 72, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
29 14 0.19
30 58 0.81
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (30 bp):
ATTTTTTGAAAAAAGACTCTCATTCGTAAG
Found at i:8123535 original size:4 final size:4
Alignment explanation
Indices: 8123526--8123551 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8123516 TTTATTACTT
8123526 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
8123552 ATCAAGAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:8139269 original size:24 final size:24
Alignment explanation
Indices: 8139237--8139313 Score: 136
Period size: 24 Copynumber: 3.2 Consensus size: 24
8139227 AACTGGTGTT
*
8139237 GGAGGACTGCCACCTCCATATGTC
1 GGAGGACTGCCACCTCCATAAGTC
8139261 GGAGGACTGCCACCTCCATAAGTC
1 GGAGGACTGCCACCTCCATAAGTC
*
8139285 GGAGGACTGCCACCTCCATAAGTT
1 GGAGGACTGCCACCTCCATAAGTC
8139309 GGAGG
1 GGAGG
8139314 GGAGTGGTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (24 bp):
GGAGGACTGCCACCTCCATAAGTC
Found at i:8142051 original size:2 final size:2
Alignment explanation
Indices: 8142044--8142078 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8142034 AAAGATGTAC
8142044 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8142079 GTTAATTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8147148 original size:29 final size:30
Alignment explanation
Indices: 8147104--8147160 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
8147094 CATTTGTTAA
* *
8147104 TTTTTAGTGGGTTAAAAGGTATTCATCTAC
1 TTTTTAGTGGGCTAAAAAGTATTCATCTAC
*
8147134 TTTTT-GTGGGCTAAAAAGTATTTATCT
1 TTTTTAGTGGGCTAAAAAGTATTCATCT
8147161 TTTTCTTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (30 bp):
TTTTTAGTGGGCTAAAAAGTATTCATCTAC
Found at i:8147169 original size:29 final size:28
Alignment explanation
Indices: 8147104--8147187 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
8147094 CATTTGTTAA
*
8147104 TTTTTAGTGGGTTAAAAGGTATTCATCTAC
1 TTTTT-GTGGG-TAAAAAGTATTCATCTAC
* *
8147134 TTTTTGTGGGCTAAAAAGTATTTATCT-T
1 TTTTTGTGGG-TAAAAAGTATTCATCTAC
* * *
8147162 TTTCTTGTAGGTCAAAAGTATCCATC
1 TTT-TTGTGGGTAAAAAGTATTCATC
8147188 AATTTCTGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 15 0.33
29 25 0.56
30 5 0.11
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (28 bp):
TTTTTGTGGGTAAAAAGTATTCATCTAC
Found at i:8157185 original size:17 final size:18
Alignment explanation
Indices: 8157147--8157189 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
8157137 TAAAAATTAA
8157147 TTAAATTAT--TAATATT
1 TTAAATTATAATAATATT
8157163 TT-AATTATAATAAT-TT
1 TTAAATTATAATAATATT
8157179 TTAAATTATAA
1 TTAAATTATAA
8157190 ATAAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.25
16 6 0.25
17 12 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAAATTATAATAATATT
Found at i:8157252 original size:18 final size:18
Alignment explanation
Indices: 8157215--8157261 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
8157205 TTAAATTATA
* *
8157215 AATTAGTAATATCTTTAAT
1 AATTAATAA-ATCATTAAT
8157234 AATTAATAAATCATTAAT
1 AATTAATAAATCATTAAT
*
8157252 ATTTAA-AAAT
1 AATTAATAAAT
8157262 AAAATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.16
18 13 0.52
19 8 0.32
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
AATTAATAAATCATTAAT
Found at i:8158269 original size:2 final size:2
Alignment explanation
Indices: 8158262--8158290 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8158252 GGACCTAGTC
8158262 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8158291 AACAAAACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8160737 original size:31 final size:31
Alignment explanation
Indices: 8160702--8160765 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
8160692 AAAAAATAGC
*
8160702 ACAACATGTAGAATTAGGCAAGTGGAGATTA
1 ACAACATGTAGAATTAGCCAAGTGGAGATTA
8160733 ACAACATGTAGAATTAGCCAAGTGGAGATTA
1 ACAACATGTAGAATTAGCCAAGTGGAGATTA
8160764 AC
1 AC
8160766 TGCCAACAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.22
Consensus pattern (31 bp):
ACAACATGTAGAATTAGCCAAGTGGAGATTA
Found at i:8164682 original size:2 final size:2
Alignment explanation
Indices: 8164675--8164699 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8164665 AGGGCTTTGA
8164675 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8164700 AGTGCCGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8164831 original size:26 final size:26
Alignment explanation
Indices: 8164781--8164831 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
8164771 TAATAATAAT
*
8164781 AAAATTAATTATATTAAACATATATA
1 AAAATTAATTATATTAAACAAATATA
8164807 AAAATTAA-TATAATTAATA-AAATAT
1 AAAATTAATTAT-ATTAA-ACAAATAT
8164832 TTTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 3 0.14
26 18 0.82
27 1 0.05
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (26 bp):
AAAATTAATTATATTAAACAAATATA
Found at i:8175658 original size:7 final size:7
Alignment explanation
Indices: 8175646--8175690 Score: 90
Period size: 7 Copynumber: 6.4 Consensus size: 7
8175636 CATTATCATT
8175646 ATCAGTC
1 ATCAGTC
8175653 ATCAGTC
1 ATCAGTC
8175660 ATCAGTC
1 ATCAGTC
8175667 ATCAGTC
1 ATCAGTC
8175674 ATCAGTC
1 ATCAGTC
8175681 ATCAGTC
1 ATCAGTC
8175688 ATC
1 ATC
8175691 CAATGTTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (7 bp):
ATCAGTC
Found at i:8188739 original size:26 final size:25
Alignment explanation
Indices: 8188709--8188804 Score: 79
Period size: 26 Copynumber: 3.6 Consensus size: 25
8188699 ATAACATGTA
8188709 ATAATAATATTTTTTCAACATAGCGT
1 ATAATAATATTTTTTCAACAT-GCGT
8188735 ATAATAGCAGTATTTTTTTTCAACATGGCGT
1 ATAATA--A-TA--TTTTTTCAACAT-GCGT
*
8188766 ATAACAATATTTTTT-AACCATGACGT
1 ATAATAATATTTTTTCAA-CATG-CGT
*
8188792 GTAAT-ATATTTTT
1 ATAATAATATTTTT
8188805 GTACATAACA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
25 11 0.19
26 21 0.36
28 3 0.05
29 3 0.05
31 21 0.36
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.44
Consensus pattern (25 bp):
ATAATAATATTTTTTCAACATGCGT
Found at i:8188739 original size:29 final size:29
Alignment explanation
Indices: 8188707--8188774 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 29
8188697 ATATAACATG
8188707 TAATAATAATATTTTTTCAACATAGCGTA
1 TAATAATAATATTTTTTCAACATAGCGTA
* *
8188736 TAATAGCAGT-ATTTTTTTTCAACATGGCGTA
1 TAATA--A-TAATATTTTTTCAACATAGCGTA
*
8188767 TAACAATA
1 TAATAATA
8188775 TTTTTTAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
28 1 0.03
29 6 0.19
31 24 0.75
32 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (29 bp):
TAATAATAATATTTTTTCAACATAGCGTA
Found at i:8188776 original size:28 final size:31
Alignment explanation
Indices: 8188718--8188780 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
8188708 AATAATAATA
*
8188718 TTTTTTCAACATAGCGTATAATAGCAGTATT
1 TTTTTTCAACATAGCGTATAATAGCAATATT
*
8188749 TTTTTTCAACATGGCGTAT-A-A-CAATATT
1 TTTTTTCAACATAGCGTATAATAGCAATATT
8188777 TTTT
1 TTTT
8188781 AACCATGACG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 10 0.33
29 1 0.03
30 1 0.03
31 18 0.60
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (31 bp):
TTTTTTCAACATAGCGTATAATAGCAATATT
Found at i:8188914 original size:21 final size:21
Alignment explanation
Indices: 8188889--8188938 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
8188879 TGTATATAGT
*
8188889 GTGTAACAACTTAACCATGAC
1 GTGTAACAACCTAACCATGAC
*
8188910 GTGTAACAACCTAACCATGGC
1 GTGTAACAACCTAACCATGAC
*
8188931 ATGTAACA
1 GTGTAACA
8188939 TGTTTCGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (21 bp):
GTGTAACAACCTAACCATGAC
Found at i:8199905 original size:3 final size:3
Alignment explanation
Indices: 8199897--8199932 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
8199887 CTTCCTTCGC
*
8199897 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CCT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
8199933 TTTTCTTTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:8201684 original size:25 final size:25
Alignment explanation
Indices: 8201656--8201710 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
8201646 TTTCTATTTT
8201656 TATCAATTTTTATTTTATAAATAGA
1 TATCAATTTTTATTTTATAAATAGA
8201681 TATCAATTTTTATTTTATAAATAGA
1 TATCAATTTTTATTTTATAAATAGA
8201706 TATCA
1 TATCA
8201711 TGGCACAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (25 bp):
TATCAATTTTTATTTTATAAATAGA
Found at i:8215177 original size:68 final size:67
Alignment explanation
Indices: 8215089--8215223 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 67
8215079 TTTCAAGTTA
* * * * * *
8215089 TATTTTTATAATATATTATCAGCATGATTCTTTACTCTTTCAAGTTTTGA-TATTATTTAGTTTT
1 TATTTTCATAATACATTATCAACATGATTCTCTAATCTCTCAAGTTTT-ACTATTATTTAGTTTT
8215153 CAT
65 CAT
*
8215156 TATTTTCAGTAATACATTATCAACATGATTCTCTAATCTCTCGAGTTTTACTATTATTTAGTTTT
1 TATTTTCA-TAATACATTATCAACATGATTCTCTAATCTCTCAAGTTTTACTATTATTTAGTTTT
8215221 CAT
65 CAT
8215224 CATCTTTAGG
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
67 8 0.14
68 51 0.86
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.52
Consensus pattern (67 bp):
TATTTTCATAATACATTATCAACATGATTCTCTAATCTCTCAAGTTTTACTATTATTTAGTTTTC
AT
Found at i:8230641 original size:21 final size:20
Alignment explanation
Indices: 8230604--8230649 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
8230594 ATTGTTAAAG
8230604 ATAAA-TTAAATGATCAATAA
1 ATAAATTTAAATGATCAA-AA
* *
8230624 ATAAATTTAATTGGTCAAAA
1 ATAAATTTAAATGATCAAAA
8230644 ATAAAT
1 ATAAAT
8230650 ATTATTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAAATTTAAATGATCAAAA
Found at i:8236772 original size:29 final size:28
Alignment explanation
Indices: 8236740--8236829 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
8236730 TTATATGATG
* *
8236740 TTACACTTCATGTTGAAAAAATATTATTG
1 TTACACATCATGTT-AAAAAATATTATTA
* *
8236769 TTACACACCATATTAAAAAATATTATTA
1 TTACACATCATGTTAAAAAATATTATTA
8236797 TTACACATCATGTTTAAAAAA-ATT-TTA
1 TTACACATCATG-TTAAAAAATATTATTA
8236824 TTACAC
1 TTACAC
8236830 TTTCTTGCCT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
27 9 0.17
28 26 0.48
29 19 0.35
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.39
Consensus pattern (28 bp):
TTACACATCATGTTAAAAAATATTATTA
Found at i:8236854 original size:58 final size:58
Alignment explanation
Indices: 8236791--8236905 Score: 176
Period size: 58 Copynumber: 2.0 Consensus size: 58
8236781 TTAAAAAATA
**
8236791 TTATTATTACACATCATGTTTAAAAAAATTTTATTACACTTTCTTGCCTAAAATATTG
1 TTATTATTACACATCATGTTTAAAAAAATTTTATTACACTTTAATGCCTAAAATATTG
* * * *
8236849 TTATTATTCCACGTCATGTTTAAAAAAATTTTGTTACACTTTAATGCTTAAAATATT
1 TTATTATTACACATCATGTTTAAAAAAATTTTATTACACTTTAATGCCTAAAATATT
8236906 ATTGTTACTT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (58 bp):
TTATTATTACACATCATGTTTAAAAAAATTTTATTACACTTTAATGCCTAAAATATTG
Found at i:8238815 original size:19 final size:19
Alignment explanation
Indices: 8238791--8238836 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8238781 TTATATTTAT
*
8238791 TAATATA-TTATATGATATA
1 TAATATATTTAT-TAATATA
8238810 TAATATATTTATTAATATA
1 TAATATATTTATTAATATA
*
8238829 CAATATAT
1 TAATATAT
8238837 AATCTATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
TAATATATTTATTAATATA
Found at i:8238931 original size:18 final size:19
Alignment explanation
Indices: 8238889--8238934 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
8238879 TTATATAGAC
*
8238889 TATAGTAATATAGTATAACT
1 TATATTAATATAG-ATAACT
*
8238909 TATATTAATATAG-TAAGT
1 TATATTAATATAGATAACT
8238927 TATATTAA
1 TATATTAA
8238935 ATTATTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.50
20 12 0.50
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (19 bp):
TATATTAATATAGATAACT
Found at i:8239198 original size:20 final size:20
Alignment explanation
Indices: 8239163--8239203 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8239153 TAAATAGTCA
* *
8239163 ATAACAATTTAGTATTATAT
1 ATAACAATATACTATTATAT
*
8239183 ATAACAATATACTATTCTAT
1 ATAACAATATACTATTATAT
8239203 A
1 A
8239204 GTATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (20 bp):
ATAACAATATACTATTATAT
Found at i:8239316 original size:26 final size:26
Alignment explanation
Indices: 8239267--8239323 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
8239257 TAACTATATG
*
8239267 TAGTA-ATATATTAATACACTATACA
1 TAGTATATATATTAATACACCATACA
* *
8239292 TAGTATATATCTTAATGCACCATACA
1 TAGTATATATATTAATACACCATACA
8239318 TA-TATA
1 TAGTATA
8239324 GTGTACTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (26 bp):
TAGTATATATATTAATACACCATACA
Found at i:8239591 original size:28 final size:28
Alignment explanation
Indices: 8239538--8239591 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
8239528 AAAATTCAGC
* *
8239538 TAAATCAGTTAAAATTGATTTAATCAAT
1 TAAATCAGTTAAAATTAATTAAATCAAT
8239566 TAAAGTCAGTTAAAA-TAATTAAATCA
1 TAAA-TCAGTTAAAATTAATTAAATCA
8239592 GTCGGTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (28 bp):
TAAATCAGTTAAAATTAATTAAATCAAT
Found at i:8240372 original size:35 final size:39
Alignment explanation
Indices: 8240327--8240427 Score: 97
Period size: 35 Copynumber: 2.7 Consensus size: 39
8240317 TATATTTTTA
* *
8240327 ATATCATATATTTTATTTTTATTTTTTATTATAA-T-CT
1 ATATAATATATTTTATTTTTATTTTTTAATATAATTCCT
*
8240364 -TAT-ATATA--TTAGTTTTTCTTTTGTTAATATAATTCCT
1 ATATAATATATTTTA-TTTTTATTTT-TTAATATAATTCCT
* *
8240401 ATATAATATATTTTGTTTTAATTTTTT
1 ATATAATATATTTTATTTTTATTTTTT
8240428 TCCTTTAAAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
33 3 0.06
34 9 0.18
35 13 0.25
36 4 0.08
37 2 0.04
38 3 0.06
39 7 0.14
40 8 0.16
41 2 0.04
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (39 bp):
ATATAATATATTTTATTTTTATTTTTTAATATAATTCCT
Found at i:8241939 original size:60 final size:60
Alignment explanation
Indices: 8241812--8241946 Score: 180
Period size: 60 Copynumber: 2.2 Consensus size: 60
8241802 GTCACGACTT
* ** * * *
8241812 CAAGTCCCCCTTTACCTACTCGTGGGAACTCCCCATGCCATTGAATATGAGTTGAAGTTG
1 CAAGTCCCCCTTTATCTACTCGTGGGAACTCCCCATGCCACCGAATATGAGTCGAAGCTC
* * * *
8241872 CAGGTCCCCCTTTATCTACTTGTGGGAACTCCCTATGCCACCGAATATGAGTCGAGGCTC
1 CAAGTCCCCCTTTATCTACTCGTGGGAACTCCCCATGCCACCGAATATGAGTCGAAGCTC
8241932 CAAGTCCCCCTTTAT
1 CAAGTCCCCCTTTAT
8241947 TATCAATTAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 64 1.00
ACGTcount: A:0.21, C:0.31, G:0.19, T:0.28
Consensus pattern (60 bp):
CAAGTCCCCCTTTATCTACTCGTGGGAACTCCCCATGCCACCGAATATGAGTCGAAGCTC
Found at i:8245317 original size:26 final size:26
Alignment explanation
Indices: 8245286--8245337 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
8245276 TTATAAAAAA
*
8245286 AACATGATGTGTAATAAT-TTATTTTT
1 AACATGAGGTGTAATAATGTT-TTTTT
*
8245312 AACATGGGGTGTAATAATGTTTTTTT
1 AACATGAGGTGTAATAATGTTTTTTT
8245338 CCAATAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.31, C:0.04, G:0.17, T:0.48
Consensus pattern (26 bp):
AACATGAGGTGTAATAATGTTTTTTT
Found at i:8261707 original size:18 final size:20
Alignment explanation
Indices: 8261686--8261723 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8261676 TAATCAACAA
8261686 ACAA-AATATT-TATAATAT
1 ACAATAATATTATATAATAT
*
8261704 ACAATAATTTTATATAATAT
1 ACAATAATATTATATAATAT
8261724 TTAAATCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (20 bp):
ACAATAATATTATATAATAT
Found at i:8262925 original size:31 final size:31
Alignment explanation
Indices: 8262889--8262954 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
8262879 ATGTGAACGC
**
8262889 TTATTTTTTAGTTTTTTTATATAATAATTAT
1 TTATTTTTTAAATTTTTTATATAATAATTAT
8262920 TTATTTTTTAAATTTTTTATATAATAATTAT
1 TTATTTTTTAAATTTTTTATATAATAATTAT
8262951 TTAT
1 TTAT
8262955 AAAATATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (31 bp):
TTATTTTTTAAATTTTTTATATAATAATTAT
Found at i:8262953 original size:15 final size:15
Alignment explanation
Indices: 8262904--8262960 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
8262894 TTTTAGTTTT
8262904 TTTATATAATAATTA
1 TTTATATAATAATTA
* ** *
8262919 TTTATTTTTTAAATTT
1 TTTATATAAT-AATTA
8262935 TTTATATAATAATTA
1 TTTATATAATAATTA
*
8262950 TTTATAAAATA
1 TTTATATAATA
8262961 TAAAAAGGTT
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 21 0.66
16 11 0.34
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTATATAATAATTA
Found at i:8263053 original size:93 final size:93
Alignment explanation
Indices: 8262936--8263149 Score: 226
Period size: 92 Copynumber: 2.3 Consensus size: 93
8262926 TTTAAATTTT
* * * *
8262936 TTATATAATAATTATTTATA-AAATATAAAA-AGGTTCTAAAATATAAATTTTGAAGTATTAAAT
1 TTATTTAAT-ATTATTAATATAAATA-AAAATA-GTTCTAAAATATAAAGTTTGAAATA-TAAAT
8262999 AATT-AAAATTTTATAA-TGTTAA-GCTGTAAA
62 AATTGAAAATTTTATAATTGTTAATG-TGTAAA
* **
8263029 TTATTTAATATTATTAATATAAATAAAAATATTTCTAAGCTATAAAGTTTGAAATATAAATAATT
1 TTATTTAATATTATTAATATAAATAAAAATAGTTCTAAAATATAAAGTTTGAAATATAAATAATT
* * *
8263094 GAAATTTTTATAATTTTTAATGTTTAAA
66 GAAAATTTTATAATTGTTAATGTGTAAA
* *
8263122 TGATTTTATATTATTAA-ATAAA-AAAAAT
1 TTATTTAATATTATTAATATAAATAAAAAT
8263150 TATTCAACGA
Statistics
Matches: 104, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
91 15 0.14
92 49 0.47
93 39 0.38
94 1 0.01
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (93 bp):
TTATTTAATATTATTAATATAAATAAAAATAGTTCTAAAATATAAAGTTTGAAATATAAATAATT
GAAAATTTTATAATTGTTAATGTGTAAA
Found at i:8263685 original size:31 final size:28
Alignment explanation
Indices: 8263618--8263692 Score: 80
Period size: 31 Copynumber: 2.6 Consensus size: 28
8263608 ATTTTTAAAA
*
8263618 AAATTAAAT-AAATATTTAATTTTTATT
1 AAATTTAATAAAATATTTAATTTTTATT
* *
8263645 ATATTTAATAAAATTTTTATATTTTTATTTT
1 AAATTTAATAAAATATTTA-ATTTTTA--TT
*
8263676 AAATTTAATAAATTATT
1 AAATTTAATAAAATATT
8263693 ATTAATAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 7 0.18
28 8 0.21
29 7 0.18
31 16 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
AAATTTAATAAAATATTTAATTTTTATT
Found at i:8263775 original size:13 final size:13
Alignment explanation
Indices: 8263759--8263797 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
8263749 ATTATTATAA
8263759 ATTATATTATCAT
1 ATTATATTATCAT
8263772 ATTATATTAAT-AT
1 ATTATATT-ATCAT
*
8263785 ATTATATCATCAT
1 ATTATATTATCAT
8263798 TTAATATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 2 0.09
13 19 0.83
14 2 0.09
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTATATTATCAT
Found at i:8264432 original size:2 final size:2
Alignment explanation
Indices: 8264425--8264450 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8264415 CCTATTTCAC
8264425 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8264451 TCTACGTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8272255 original size:15 final size:16
Alignment explanation
Indices: 8272225--8272257 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8272215 CTAATCAAAA
*
8272225 GTTGAATTTAAATTAT
1 GTTGAAATTAAATTAT
8272241 GTTGAAATT-AATTAT
1 GTTGAAATTAAATTAT
8272256 GT
1 GT
8272258 AATAGATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.48
Consensus pattern (16 bp):
GTTGAAATTAAATTAT
Found at i:8273232 original size:13 final size:14
Alignment explanation
Indices: 8273204--8273234 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8273194 TAAAGAAGAG
8273204 TTTATTAAAGTAAA
1 TTTATTAAAGTAAA
8273218 TTTATTAAA-TAAA
1 TTTATTAAAGTAAA
8273231 TTTA
1 TTTA
8273235 ACTTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
TTTATTAAAGTAAA
Found at i:8277313 original size:2 final size:2
Alignment explanation
Indices: 8277308--8277337 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8277298 ACTGCATCTT
*
8277308 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8277338 AGAATTGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8287869 original size:2 final size:2
Alignment explanation
Indices: 8287862--8287892 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8287852 TTTCTGTACG
8287862 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
8287893 TCTGCATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8292340 original size:2 final size:2
Alignment explanation
Indices: 8292328--8292359 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8292318 TTCCCCCTCC
*
8292328 CT CT GT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8292360 ATCATAATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8294569 original size:2 final size:2
Alignment explanation
Indices: 8294562--8294588 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8294552 GAATTCATAA
8294562 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8294589 AAAATGAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8302888 original size:26 final size:27
Alignment explanation
Indices: 8302859--8302909 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
8302849 ATTTGAAATT
8302859 TTATTTA-ATTTGATGTAATGTATTTG
1 TTATTTATATTTGATGTAATGTATTTG
* *
8302885 TTATTTATTTTTGATGTAATTTATT
1 TTATTTATATTTGATGTAATGTATT
8302910 GTTTGTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.63
Consensus pattern (27 bp):
TTATTTATATTTGATGTAATGTATTTG
Found at i:8303452 original size:29 final size:29
Alignment explanation
Indices: 8303418--8303534 Score: 89
Period size: 29 Copynumber: 3.9 Consensus size: 29
8303408 TTATTAAATA
8303418 TAATTTTAATATATTTATATTTTTATTAT
1 TAATTTTAATATATTTATATTTTTATTAT
* * *
8303447 TAATTTTTATATA-ATATCATTTCTTA-AAT
1 TAATTTTAATATATTTAT-ATTT-TTATTAT
* *
8303476 ATATTTTTAATATCATATATTTTATTTTTATTAT
1 -TAATTTT-A-AT-ATAT-TTATATTTTTATTAT
*
8303510 T-ATTATAATAT-TTTATATTTTTATT
1 TAATTTTAATATATTTATATTTTTATT
8303535 TAATATATTT
Statistics
Matches: 68, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
27 12 0.18
28 4 0.06
29 20 0.29
30 11 0.16
31 1 0.01
32 5 0.07
33 7 0.10
34 6 0.09
35 2 0.03
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (29 bp):
TAATTTTAATATATTTATATTTTTATTAT
Found at i:8303557 original size:20 final size:20
Alignment explanation
Indices: 8303498--8303679 Score: 92
Period size: 21 Copynumber: 8.5 Consensus size: 20
8303488 TCATATATTT
8303498 TATTTT-TA-TTATTATTATAA
1 TATTTTATATTTA-TATT-TAA
*
8303518 TATTTTATATTTTTATTTAA
1 TATTTTATATTTATATTTAA
8303538 TATATTTATATTTATA-TTAA
1 TAT-TTTATATTTATATTTAA
8303558 T-TTTTATATAATATCATATTTTAAA
1 TATTTTATAT--T-T-ATA-TTT-AA
*
8303583 TATATTTTTAATGTCATATATTT--
1 TAT-TTTAT-AT-T--TATATTTAA
8303606 TATTTT-TATTTATTATTATAA
1 TATTTTATATTTA-TATT-TAA
*
8303627 TATTTTATATTTTATGTTTAA
1 TATTTTATA-TTTATATTTAA
*
8303648 TATATTTATATTTACATTATTAA
1 TAT-TTTATATTTATA-T-TTAA
8303671 T-TTTTATAT
1 TATTTTATAT
8303680 AATATCATAT
Statistics
Matches: 132, Mismatches: 7, Indels: 45
0.72 0.04 0.24
Matches are distributed among these distances:
17 2 0.02
18 11 0.08
19 3 0.02
20 20 0.15
21 42 0.32
22 21 0.16
23 12 0.09
24 2 0.02
25 3 0.02
26 4 0.03
27 8 0.06
28 4 0.03
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (20 bp):
TATTTTATATTTATATTTAA
Found at i:8303603 original size:49 final size:49
Alignment explanation
Indices: 8303550--8303751 Score: 135
Period size: 49 Copynumber: 3.8 Consensus size: 49
8303540 TATTTATATT
8303550 TATATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGTCA
1 TATATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGTCA
* * *
8303599 TATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATGTTTAATATATTTAT-ATTTAC
1 TATA--TTA-----ATTT-TTA-TATAATA--TCATATTTTA-----AATATATTTTTAATGT-C
8303663 A
49 A
8303664 T-TATTAATTTTTATATAATATCATA-TTTAAATATATATTTTAATGTCA
1 TATATTAATTTTTATATAATATCATATTTTAAATATAT-TTTTAATGTCA
* * * *
8303712 TATATTTATTTTTATTTATTATTATAATTTT--ATATATTTT
1 TATATTAATTTTTATATAATATCAT-ATTTTAAATATATTTT
8303752 ATTTTCATTT
Statistics
Matches: 121, Mismatches: 10, Indels: 45
0.69 0.06 0.26
Matches are distributed among these distances:
47 7 0.06
48 9 0.07
49 32 0.26
50 1 0.01
51 6 0.05
52 4 0.03
53 4 0.03
55 7 0.06
56 7 0.06
57 7 0.06
58 7 0.06
60 9 0.07
62 3 0.02
64 5 0.04
65 13 0.11
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.61
Consensus pattern (49 bp):
TATATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGTCA
Found at i:8303607 original size:108 final size:110
Alignment explanation
Indices: 8303422--8303755 Score: 529
Period size: 108 Copynumber: 3.0 Consensus size: 110
8303412 TAAATATAAT
8303422 TTTAATATATTTATATTTTTATTATTAATTTTTATATAATATCAT-TTCTTAAATATATTTTTAA
1 TTTAATATATTTATA--TTTATTATTAATTTTTATATAATATCATATT-TTAAATATATTTTTAA
*
8303486 TATCATATATTTTATTTTTA-TTATTATTATAATATTTTATATTTTTA
63 TGTCATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTTA
8303533 TTTAATATATTTATATTTA-TATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGT
1 TTTAATATATTTATATTTATTATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGT
*
8303597 CATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTATG
66 CATATATTTTATTTTTATTTATTATTATAATATTTTATATTTT-TA
8303643 TTTAATATATTTATATTTACATTATTAATTTTTATATAATATCATA-TTTAAATATATATTTTAA
1 TTTAATATATTTATATTT--ATTATTAATTTTTATATAATATCATATTTTAAATATAT-TTTTAA
8303707 TGTCATATA-TTTATTTTTATTTATTATTAT-A-ATTTTATATATTTTA
63 TGTCATATATTTTATTTTTATTTATTATTATAATATTTTATAT-TTTTA
8303753 TTT
1 TTT
8303756 TCATTTCTTT
Statistics
Matches: 212, Mismatches: 3, Indels: 17
0.91 0.01 0.07
Matches are distributed among these distances:
108 58 0.27
109 31 0.15
110 32 0.15
111 19 0.09
112 33 0.16
113 39 0.18
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (110 bp):
TTTAATATATTTATATTTATTATTAATTTTTATATAATATCATATTTTAAATATATTTTTAATGT
CATATATTTTATTTTTATTTATTATTATAATATTTTATATTTTTA
Found at i:8303640 original size:27 final size:27
Alignment explanation
Indices: 8303492--8303755 Score: 114
Period size: 27 Copynumber: 9.7 Consensus size: 27
8303482 TTAATATCAT
8303492 ATATTTTAT-TTTTA-TTATTATTATA
1 ATATTTTATATTTTATTTATTATTATA
8303517 ATATTTTATATTTTTATTTAATATATT-T-
1 ATATTTTATA-TTTTATTT-AT-TATTATA
* *
8303545 ATA-TTTATATTAATT-TTTATATAATATC
1 ATATTTTATATT--TTATTTAT-TATTATA
* *
8303573 ATATTTTA-AATATATTT-TTAATGTCAT-
1 ATATTTTATATTTTATTTATT-AT-T-ATA
8303600 ATATTTTAT-TTTTATTTATTATTATA
1 ATATTTTATATTTTATTTATTATTATA
* *
8303626 ATATTTTATATTTTATGT-TTAATATA
1 ATATTTTATATTTTATTTATTATTATA
* *
8303652 TTTATATTTACATTATTAATTT-TTA-TATA
1 -ATAT-TTTATATT-TT-ATTTATTATTATA
* * *
8303681 ATA--TCATATTTAAATATATATT-TTAATGTC
1 ATATTTTATATTT---TATTTATTATT-A--TA
8303711 ATATATTTAT-TTTTATTTATTATTATA
1 ATAT-TTTATATTTTATTTATTATTATA
8303738 AT-TTTATATATTTTATTT
1 ATATTT-TATATTTTATTT
8303756 TCATTTCTTT
Statistics
Matches: 184, Mismatches: 19, Indels: 70
0.67 0.07 0.26
Matches are distributed among these distances:
24 1 0.01
25 19 0.10
26 35 0.19
27 60 0.33
28 26 0.14
29 21 0.11
30 16 0.09
32 3 0.02
33 3 0.02
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (27 bp):
ATATTTTATATTTTATTTATTATTATA
Found at i:8303661 original size:21 final size:23
Alignment explanation
Indices: 8303606--8303661 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
8303596 TCATATATTT
*
8303606 TATTTTTATTTATTATTATAATA
1 TATTTATATTTATTATTATAATA
*
8303629 T-TTTATA-TT-TTATGTTTAATA
1 TATTTATATTTATTAT-TATAATA
8303650 TATTTATATTTA
1 TATTTATATTTA
8303662 CATTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
20 4 0.15
21 9 0.33
22 11 0.41
23 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TATTTATATTTATTATTATAATA
Found at i:8303668 original size:15 final size:15
Alignment explanation
Indices: 8303523--8303707 Score: 64
Period size: 15 Copynumber: 12.1 Consensus size: 15
8303513 TATAATATTT
*
8303523 TATATTTTTATTTAA
1 TATATTTATATTTAA
8303538 TATATTTATATTT-A
1 TATATTTATATTTAA
* *
8303552 TATTAATTTTTATATAA
1 TA-T-ATTTATATTTAA
8303569 TATCA--TAT-TTTAAA
1 TAT-ATTTATATTT-AA
* * *
8303583 TATATTTTTAATGTCA
1 TATATTTAT-ATTTAA
* *
8303599 TATATTTTATTTTTATT
1 TATA-TTTATATTTA-A
*
8303616 TATTATTATAATATTTTA
1 TA-TATT-T-ATATTTAA
*
8303634 TAT-TTTATGTTTAA
1 TATATTTATATTTAA
8303648 TATATTTATATTTACA
1 TATATTTATATTTA-A
* *
8303664 T-TATTAAT-TTTTA
1 TATATTTATATTTAA
*
8303677 TATAATATCATATTTAA
1 TAT-AT-TTATATTTAA
*
8303694 -ATATATAT-TTTAA
1 TATATTTATATTTAA
8303707 T
1 T
8303708 GTCATATATT
Statistics
Matches: 124, Mismatches: 26, Indels: 41
0.65 0.14 0.21
Matches are distributed among these distances:
13 10 0.08
14 25 0.20
15 35 0.28
16 26 0.21
17 18 0.15
18 5 0.04
19 5 0.04
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (15 bp):
TATATTTATATTTAA
Found at i:8303775 original size:33 final size:33
Alignment explanation
Indices: 8303711--8303791 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 33
8303701 TTTTAATGTC
* *
8303711 ATATA-TTTATTTTTATTTATTATTATAATTTT
1 ATATATTTTATTTTCATTTATTAATATAATTTT
*
8303743 ATATATTTTATTTTCATTTCTTTAATAT-ATTTT
1 ATATATTTTATTTTCATTT-ATTAATATAATTTT
*
8303776 TTATATTATATATTTT
1 ATATATT-T-TATTTT
8303792 TTTTAATTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 5 0.12
33 23 0.56
34 7 0.17
35 6 0.15
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (33 bp):
ATATATTTTATTTTCATTTATTAATATAATTTT
Found at i:8303819 original size:48 final size:50
Alignment explanation
Indices: 8303767--8303889 Score: 126
Period size: 48 Copynumber: 2.5 Consensus size: 50
8303757 CATTTCTTTA
*
8303767 ATATATTTTTTATATTATATATTTTTTTTAATTT-GTTTTA-TCTATATT
1 ATATATTTTTTATATTATATATTTATTTTAATTTAGTTTTATTCTATATT
* * * * * * *
8303815 ATATAATATTAATTTTTTATATTTATTTTATTTTAATTTTTATTCTATATT
1 ATATATTTTTTATATTATATATTTATTTTAATTT-AGTTTTATTCTATATT
8303866 ATATATTATTTTA-ATTATAATATT
1 ATATATT-TTTTATATTAT-ATATT
8303890 ATAAAATATT
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
48 27 0.47
50 5 0.09
51 17 0.30
52 8 0.14
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.66
Consensus pattern (50 bp):
ATATATTTTTTATATTATATATTTATTTTAATTTAGTTTTATTCTATATT
Found at i:8303822 original size:53 final size:49
Alignment explanation
Indices: 8303765--8303877 Score: 140
Period size: 53 Copynumber: 2.2 Consensus size: 49
8303755 TTCATTTCTT
* *
8303765 TAATATATTTTTTATATTATATATTTTTTTTAATTTGTTTTATCTATATTATA
1 TAATATATTTTTTATATT-TAT-TTTATTTTAATTT-TTAT-TCTATATTATA
8303818 TAATATTAATTTTTTATATTTATTTTATTTTAATTTTTATTCTATATTATA
1 TAATA-T-ATTTTTTATATTTATTTTATTTTAATTTTTATTCTATATTATA
8303869 T-AT-TATTTT
1 TAATATATTTT
8303878 AATTATAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
47 5 0.09
48 1 0.02
50 2 0.04
51 12 0.21
52 3 0.05
53 17 0.30
54 4 0.07
55 12 0.21
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (49 bp):
TAATATATTTTTTATATTTATTTTATTTTAATTTTTATTCTATATTATA
Found at i:8303827 original size:29 final size:28
Alignment explanation
Indices: 8303794--8303875 Score: 77
Period size: 24 Copynumber: 3.1 Consensus size: 28
8303784 TATATTTTTT
8303794 TTAATTTGTTTTATCTATATTATATAATA
1 TTAATTT-TTTTATCTATATTATATAATA
*
8303823 TTAATTTTTTATAT-T-TATT-T-T-ATT
1 TTAATTTTTT-TATCTATATTATATAATA
* *
8303847 TTAATTTTTAT-TCTATATTATATATTA
1 TTAATTTTTTTATCTATATTATATAATA
8303874 TT
1 TT
8303876 TTAATTATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
22 1 0.02
23 2 0.05
24 15 0.35
25 2 0.05
26 2 0.05
27 7 0.16
28 4 0.09
29 10 0.23
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.66
Consensus pattern (28 bp):
TTAATTTTTTTATCTATATTATATAATA
Found at i:8303876 original size:29 final size:28
Alignment explanation
Indices: 8303763--8303881 Score: 99
Period size: 29 Copynumber: 4.2 Consensus size: 28
8303753 TTTTCATTTC
*
8303763 TTTAATATATTTTT-TATATTATATATTTTT
1 TTTAAT-T-TTTTTCTATATTATATA-TTAT
8303793 TTTAATTTGTTTTATCTATATTATATA--AT
1 TTTAA-TT-TTTT-TCTATATTATATATTAT
* *
8303822 ATTAA--TTTTT-TATATT-TATTTTAT
1 TTTAATTTTTTTCTATATTATATATTAT
8303846 TTTAATTTTTATTCTATATTATATATTAT
1 TTTAATTTTT-TTCTATATTATATATTAT
8303875 TTTAATT
1 TTTAATT
8303882 ATAATATTAT
Statistics
Matches: 73, Mismatches: 6, Indels: 21
0.73 0.06 0.21
Matches are distributed among these distances:
22 3 0.04
23 6 0.08
24 7 0.10
25 4 0.05
26 3 0.04
27 2 0.03
28 6 0.08
29 19 0.26
30 10 0.14
31 2 0.03
32 11 0.15
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (28 bp):
TTTAATTTTTTTCTATATTATATATTAT
Found at i:8303881 original size:53 final size:55
Alignment explanation
Indices: 8303771--8303875 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 55
8303761 TCTTTAATAT
* *
8303771 ATTTTTTATATTATATATTTTTTTTAATTTGTTTTATCTATATTATATAATATTA
1 ATTTTTTATATTATATATTTATTTTAATTTGTTATATCTATATTATATAATATTA
*
8303826 ATTTTTTATATT-TAT-TTTATTTTAATTT-TTAT-TCTATATTATATATTATT
1 ATTTTTTATATTATATATTTATTTTAATTTGTTATATCTATATTATATAATATT
8303876 TTAATTATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
51 17 0.36
52 3 0.06
53 12 0.26
54 3 0.06
55 12 0.26
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.68
Consensus pattern (55 bp):
ATTTTTTATATTATATATTTATTTTAATTTGTTATATCTATATTATATAATATTA
Found at i:8303888 original size:17 final size:16
Alignment explanation
Indices: 8303816--8303891 Score: 61
Period size: 17 Copynumber: 4.7 Consensus size: 16
8303806 ATCTATATTA
8303816 TATAATATTAATTTT-T
1 TATAATATT-ATTTTAT
8303832 TAT-AT-TTATTTTAT
1 TATAATATTATTTTAT
* *
8303846 TTTAATTTTTATTCTATAT
1 TATAA-TATTATT-T-TAT
8303865 TAT-ATATTATTTTAAT
1 TATAATATTATTTT-AT
8303881 TATAATATTAT
1 TATAATATTAT
8303892 AAAATATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 15
0.73 0.04 0.22
Matches are distributed among these distances:
13 5 0.10
14 5 0.10
15 4 0.08
16 10 0.20
17 18 0.37
18 2 0.04
19 5 0.10
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (16 bp):
TATAATATTATTTTAT
Found at i:8303892 original size:29 final size:27
Alignment explanation
Indices: 8303830--8303892 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 27
8303820 ATATTAATTT
* * *
8303830 TTTATATTTATTTTATTTTAATTTTTA
1 TTTATATTTATATTATTTTAATTATAA
8303857 TTCTATATTATATATTATTTTAATTATAA
1 TT-TATATT-TATATTATTTTAATTATAA
8303886 TATTATA
1 T-TTATA
8303893 AAATATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 2 0.07
28 6 0.20
29 21 0.70
30 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTATATTTATATTATTTTAATTATAA
Found at i:8310168 original size:12 final size:12
Alignment explanation
Indices: 8310151--8310181 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8310141 AAGTAGAAGC
8310151 CTTTTCTTTTTT
1 CTTTTCTTTTTT
8310163 CTTTTCTTTTTT
1 CTTTTCTTTTTT
*
8310175 TTTTTCT
1 CTTTTCT
8310182 GTTGTGGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
CTTTTCTTTTTT
Found at i:8310445 original size:2 final size:2
Alignment explanation
Indices: 8310438--8310463 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8310428 TGGAGGAAAC
8310438 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
8310464 CAGAAAGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8315808 original size:22 final size:22
Alignment explanation
Indices: 8315783--8315851 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
8315773 CTAAATTACC
8315783 CAGTATCCATCAGAGCTTATGA
1 CAGTATCCATCAGAGCTTATGA
* * * * * *
8315805 CAGTTTTCAACCAAAAC-TAT-C
1 CAG-TATCCATCAGAGCTTATGA
8315826 CAGTATCCATCAGAGCTTATGA
1 CAGTATCCATCAGAGCTTATGA
8315848 CAGT
1 CAGT
8315852 TTTCAACCAT
Statistics
Matches: 32, Mismatches: 12, Indels: 6
0.64 0.24 0.12
Matches are distributed among these distances:
20 8 0.25
21 6 0.19
22 10 0.31
23 8 0.25
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (22 bp):
CAGTATCCATCAGAGCTTATGA
Found at i:8316933 original size:2 final size:2
Alignment explanation
Indices: 8316926--8316951 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8316916 GATTTATGTG
8316926 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
8316952 AGGATTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8317160 original size:22 final size:22
Alignment explanation
Indices: 8317130--8317270 Score: 96
Period size: 22 Copynumber: 6.5 Consensus size: 22
8317120 AAAAAATATA
* *
8317130 AAAAACTTAAAATCAATTTAAC
1 AAAACCTTAAAATCAATTCAAC
8317152 AAAACCTTAAAATCAATTC-AC
1 AAAACCTTAAAATCAATTCAAC
* *
8317173 AAAA-CTCT-ATATCCGATTCAAC
1 AAAACCT-TAAAAT-CAATTCAAC
**
8317195 AAAATTTTAAAATCAATTCAAC
1 AAAACCTTAAAATCAATTCAAC
* ** *
8317217 -AAACCCTAAAATTGATTGAAC
1 AAAACCTTAAAATCAATTCAAC
* *
8317238 AAAATCC-CAAAATCAATTCCAC
1 AAAA-CCTTAAAATCAATTCAAC
*
8317260 -AAACCCTAAAA
1 AAAACCTTAAAA
8317271 CTTGCTCACA
Statistics
Matches: 92, Mismatches: 19, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
20 7 0.08
21 34 0.37
22 45 0.49
23 6 0.07
ACGTcount: A:0.52, C:0.22, G:0.02, T:0.24
Consensus pattern (22 bp):
AAAACCTTAAAATCAATTCAAC
Found at i:8317239 original size:43 final size:43
Alignment explanation
Indices: 8317187--8317270 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
8317177 CTCTATATCC
***
8317187 GATTCAACAAAATTTTAAAATCAATTCAACAAACCCTAAAATT
1 GATTCAACAAAATCCCAAAATCAATTCAACAAACCCTAAAATT
* *
8317230 GATTGAACAAAATCCCAAAATCAATTCCACAAACCCTAAAA
1 GATTCAACAAAATCCCAAAATCAATTCAACAAACCCTAAAA
8317271 CTTGCTCACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.51, C:0.23, G:0.04, T:0.23
Consensus pattern (43 bp):
GATTCAACAAAATCCCAAAATCAATTCAACAAACCCTAAAATT
Found at i:8330408 original size:12 final size:12
Alignment explanation
Indices: 8330393--8330463 Score: 54
Period size: 12 Copynumber: 5.7 Consensus size: 12
8330383 ATATACACAC
8330393 ACATATATGTAT
1 ACATATATGTAT
*
8330405 ACATGTATGTAT
1 ACATATATGTAT
** *
8330417 ATGTGTACATGTATGT
1 A--CATATATGTA--T
8330433 ACATA-ATGTAT
1 ACATATATGTAT
8330444 ACATATATGTAT
1 ACATATATGTAT
*
8330456 ATATATAT
1 ACATATAT
8330464 CTAAACAGAA
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
11 6 0.13
12 25 0.54
13 5 0.11
14 8 0.17
16 2 0.04
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (12 bp):
ACATATATGTAT
Found at i:8330417 original size:18 final size:18
Alignment explanation
Indices: 8330396--8330462 Score: 80
Period size: 18 Copynumber: 3.6 Consensus size: 18
8330386 TACACACACA
8330396 TATATGTATACATGTATG
1 TATATGTATACATGTATG
*
8330414 TATATGTGTACATGTATG
1 TATATGTATACATGTATG
*
8330432 TACATAATGTATACATATATG
1 T--AT-ATGTATACATGTATG
*
8330453 TATATATATA
1 TATATGTATA
8330463 TCTAAACAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 24 0.57
19 2 0.05
20 2 0.05
21 14 0.33
ACGTcount: A:0.37, C:0.06, G:0.13, T:0.43
Consensus pattern (18 bp):
TATATGTATACATGTATG
Found at i:8336544 original size:2 final size:2
Alignment explanation
Indices: 8336537--8336567 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8336527 TAAGTTACAA
*
8336537 CT CT CT CT CT CT CT CT CT CT CT CA CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
8336568 ATATTTGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.03, C:0.52, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:8374988 original size:246 final size:244
Alignment explanation
Indices: 8374283--8376078 Score: 1311
Period size: 246 Copynumber: 7.2 Consensus size: 244
8374273 ATGCGCCAAC
* *
8374283 TAAAAGTATTTAACGATTTACAAATTTTAATTTATAAAGAAATAATACTAAAGATAAAAATAATT
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTAT----AAATAATA--AAA-ATAAAAATAATT
* * * * * * * *
8374348 ATAGTAAAAATTAATAACTG--TAAAATTTTATCATAAATTTATAAGAATTAATGTAAAAGAATT
59 GTAGTGAAAATTAACAATTGAAAAAAACTTGA-CATAAA-TTATAAGAATTAACGTAAAA-AATT
* * ** * * ** * *
8374411 ATAAAAGTAGAACAAGTATTATTAAAATATTGATGTAAACATATGAGATTTAATGTACCAAGTCA
121 ATAAAAGTGGAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCA
* * * * *
8374476 ATTAAGTTAAAATAAATTTAATTTTTGTTAAAATTAAACATTTAAATATATATTATTGAGC
186 ATTAAGTCAAAATAAATATAATTTTTG-TAAAATTAAATATTTAAATTTATATTATT-AGT
* ** * *
8374537 TAAAACTATTTAACAATTTATGAATTTTAATTTATAAATGACTAATAATAAGGATAAAGATAATT
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTAT-AA--A-TAATAA-AA--ATAAAAATAATT
* ** ** * * * * *
8374602 ATAGTGAAAAAAAACAATTG-AAAAATTTTAACATAAACTTGTAAGAATTAACATAAAATATGAT
59 GTAGTGAAAATTAACAATTGAAAAAAACTTGACATAAA-TTATAAGAATTAACGTAAAAAATTAT
**** * * * * * * * * *
8374666 AAAAGTGGAATATGCCTTGTTAAATTATTGACGTAAATATTTGATATTTAACGTAACAAATTAAT
123 AAAAGTGGAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCAAT
8374731 TAAGTCAAAATAAATATAATTTTTGTAAATATTAAATATTTAAATTTATATTATCTAGT
188 TAAGTCAAAATAAATATAATTTTTGTAAA-ATTAAATATTTAAATTTATATTAT-TAGT
* *
8374790 TAAAAATATTTAATGGTTTATAAATTTTAATTTATAAATAATAAAAATAAAAATAATTGTAGTGA
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTATAAATAATAAAAATAAAAATAATTGTAGTGA
* ** ** * *
8374855 AAATAAACAATTG-AAAACCCTTGATGTAAATATATAAAAATTAATGTAAAAAATTATAAAAGTG
66 AAATTAACAATTGAAAAAAACTTGACATAAAT-TATAAGAATTAACGTAAAAAATTATAAAAGTG
* * * * * * * * * *
8374919 GAATAAGAATTGTTAAAATATTAACATAGATGTGTAATATTTAAGGTAAGAAGTCAATCATGTCA
130 GAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCAATTAAGTCA
*
8374984 AAATAAATATAAATTTTT-TAAAAATTAAATATTTAAATTTATA-T-TGAGT
195 AAATAAATAT-AATTTTTGT-AAAATTAAATATTTAAATTTATATTATTAGT
* * * *
8375033 TAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGATAAAAATGACT
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTATAAAT-AATAAAAATAAA-A-ATAATTG--T
* **
8375098 A-TAAAGAAAATT-ACTTATT-AAAAAATTTTGACATAAACTTATAAGAATTAACGTAAAAAATT
61 AGT---GAAAATTAAC-AATTGAAAAAAACTTGACATAAA-TTATAAGAATTAACGTAAAAAATT
* * * * *
8375160 ATAAAAGTGGATTAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAATTTAATATA-CC
121 ATAAAAGTGGAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACA-AGTC
* * *
8375224 ATTTAAGTCAAAATAAATAT-ATATTTGTGAAAATTAAAAATTTAAATTTATATATATTATCATG
185 AATTAAGTCAAAATAAATATAATTTTTGT-AAAATTAAATATTTAAATTTATAT-TA-T-T-A-G
8375288 T
244 T
* ** * * *
8375289 TAAAAGTATTTAATGAATTATAAAATTTAATTTATAAATAAAAATGAGAATAAAAATAATCGTAG
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTATAAATAATAA--A-AATAAAAATAATTGTAG
* *
8375354 TGAAAATTAACAA-TGAAAAAAACTTGA-AGTAAATTTATAAAAATTAACGTAAAATATTATAAA
63 TGAAAATTAACAATTGAAAAAAACTTGACA-TAAA-TTATAAGAATTAACGTAAAAAATTATAAA
* * * * * * * *
8375417 AGT-AAAAAAAATATTATTAAAATATTAACTTGAGTATGTGATATTTAAAGTAACAAGTCAATTA
126 AGTGGAATAAAA-ATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCAATTA
* * *
8375481 CGTCAAAATAAATATAAGTTTCATG-AAAATTAAATATTTAAATTTATATTATAAGT
190 AGTCAAAATAAATATAA-TTT-TTGTAAAATTAAATATTTAAATTTATATTATTAGT
* * **
8375537 TAAAAGTATTTAACGGTTTAGAAATTTTACTTTATAAATGAATAATAATAAAGATAAAAATGGTT
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTAT--A--AATAAT-A-AAA-ATAAAAATAATT
* * * * * * *
8375602 ATAGTTAAAATTATCAATTG--TAAAACTTTAACATTAACTTGTAAGAATTAACGTAAAAAATTA
59 GTAGTGAAAATTAACAATTGAAAAAAAC-TTGACA-TAAATTATAAGAATTAACGTAAAAAATTA
* * * * *
8375665 T-AAAGAT-GAA-ACAAA-TATT---ATATTAATGTAAATTTATGAGATTTAATATAA-AATGTC
122 TAAAAG-TGGAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAA-GTC
* * * * * * **
8375722 AACTAAGTCAAAATAAGTATATTTTTTTGTAAAAATTAAAAATTTCAATTTATATTATCAACC
185 AATTAAGTCAAAATAAATATA-ATTTTTGT-AAAATTAAATATTTAAATTTATATTAT-TAGT
* * *
8375785 TAAAAGTATTGAACAGTTTAT-AATTTATAA---ATAAATAATAATAAGAGTAAAAATAATTTTA
1 TAAAAGTATTTAACGGTTTATAAATTT-TAATTTATAAATAATAA-AA-A-TAAAAATAATTGTA
* ** * * *
8375846 GTGAAAATTGATTA-TGAAAAATACTTGACATAAACTTGTAAGAATTAA-GTAAAACATTATAAA
62 GTGAAAATTAACAATTGAAAAAAACTTGACATAAA-TTATAAGAATTAACGTAAAAAATTATAAA
* * * * ** *
8375909 TGTGAAACAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAACATAACAAGTCAATTAT
126 AGTGGAATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCAATTAA
* *
8375974 GTTAAAATAAATATAATTTTTGTAAAAATTAAATATTTAAATTTATCTTATGT-GT
191 GTCAAAATAAATATAATTTTTGT-AAAATTAAATATTTAAATTTATATTAT-TAGT
* * * * * *
8376029 TAAAATTATTTAATGATTTACAAAATTTAA-TTATAAATAAATAATAATAA
1 TAAAAGTATTTAACGGTTTATAAATTTTAATTTATAAAT-AATAAAAATAA
8376079 TGAAAAAATA
Statistics
Matches: 1237, Mismatches: 228, Indels: 164
0.76 0.14 0.10
Matches are distributed among these distances:
239 1 0.00
240 22 0.02
241 49 0.04
242 8 0.01
243 44 0.04
244 33 0.03
245 46 0.04
246 252 0.20
247 48 0.04
248 62 0.05
249 36 0.03
250 113 0.09
251 27 0.02
252 174 0.14
253 168 0.14
254 92 0.07
255 15 0.01
256 40 0.03
257 1 0.00
258 6 0.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (244 bp):
TAAAAGTATTTAACGGTTTATAAATTTTAATTTATAAATAATAAAAATAAAAATAATTGTAGTGA
AAATTAACAATTGAAAAAAACTTGACATAAATTATAAGAATTAACGTAAAAAATTATAAAAGTGG
AATAAAAATTATTAAAATATTAACGTAAATGTGTGAGATTTAATGTAACAAGTCAATTAAGTCAA
AATAAATATAATTTTTGTAAAATTAAATATTTAAATTTATATTATTAGT
Found at i:8375519 original size:748 final size:746
Alignment explanation
Indices: 8374282--8376096 Score: 1804
Period size: 748 Copynumber: 2.4 Consensus size: 746
8374272 AATGCGCCAA
* * *
8374282 CTAAAAGTATTTAACGATTTACAAATTTTAATTTATAAAGAAATAATACTAAAGATAAAAATAAT
1 CTAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGATAAAAATAAT
* * * *
8374347 TATAGTA-AAAATTAATAACTGTAAAATTTT-ATCATAAATTTATAAGAATTAATGTAAAAGAAT
66 TATA-AAGAAAATT-ATTA-TGAAAAATTTTGA-CATAAACTTATAAGAATTAA-GTAAAA-AAT
* ** * ** * * *
8374410 TATAAAAGTAGAACAAGTATTATTAAAATATTGA-TGTAAACATATGAGATTTAATGTACCAAGT
125 TATAAAAGTGGAACAAAAATTATTAAAATATTAACT-TAAATGTGTGAGATTTAATATAACAAGT
* * * *
8374474 CAATTAAGTTAAAATAAATTTAATTTTTGTTAAAATTAAACATTTAAA-TATATATTATT-GA-G
189 CAATTAAGTTAAAATAAATATAATTTTTGTAAAAATTAAAAATTTAAATTATATA-TATTATATG
* * * * * *
8374536 CTAAAACTATTTAA-CAATTTATGAATTTTAATTTATAAATGACTAATAATAAGGATAAAGATAA
253 TTAAAACTATTTAATGAA-TTATAAAATTTAATTTATAAAT-A--AATAATAAGAATAAAAATAA
* * * * *
8374600 TTATAGTGAAAAAAAACAATTGAAAAATTTTAACATAAACTTGTAAGAATTAACATAAAATATGA
314 TCATAGTGAAAAAAAACAATTGAAAAACTTGAACATAAACTTATAAAAATTAACATAAAATATGA
** * ** * * * * * * *
8374665 TAAAAGTGGAATATGCCTTGTTAAATTATTGACGTAAATATTTGATATTTAACGTAACAAATTAA
379 TAAAAGTAAAAAAAACATTATTAAAATATTAACGTAAATATGTGATATTTAAAGTAACAAATCAA
* *
8374730 TTAAGTCAAAATAAATATAATTTTTGTAAATATTAAATATTTAAATTTATATTATCTAGTTAAAA
444 TTAAGTCAAAATAAATATAATTTATGTAAATATTAAATATTTAAATTTATATTAT-AAGTTAAAA
* * *
8374795 ATATTTAATGGTTTATAAATTTTAATTTAT-A-AATAAT-A-AAA-ATAAAAATAATTGTAGTGA
508 ATATTTAACGGTTTAGAAATTTTAATTTATAAGAATAATAATAAAGATAAAAATAATTATAGTGA
* *
8374855 AAATAAACAATTG-AAAACCCTT-GATGTAAATATATAAAAATTAATGTAAAAAATTATAAA-AG
573 AAATAAACAATTGTAAAA-CCTTACAT-TAAAT-TATAAAAATTAACGTAAAAAATTATAAAGA-
* * * * *
8374917 TGGAATA-AGAATTGTTAAAATATTAACATAGATGTGTAATATTTAAGGTAAGAA-GTCAA-TCA
634 T-GAA-ACA-AA-TATT---ATATTAACATAAATGTATAAGATTTAAGATAA-AATGTCAACT-A
* * * *
8374979 TGTCAAAATAAATATAAATTTTT-TAAAAATTAAATATTTAAATTTATA-T-T-GAG
690 AGTCAAAATAAATATAAATTTTTGTAAAAATTAAAAATTTAAATTTATATTATCAAC
* * *
8375032 TTAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGATAAAAATGAC
1 CTAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGATAAAAATAAT
*
8375097 TATAAAGAAAATTACTTATTAAAAAATTTTGACATAAACTTATAAGAATTAACGTAAAAAATTAT
66 TATAAAGAAAATTA-TTA-TGAAAAATTTTGACATAAACTTATAAGAATTAA-GTAAAAAATTAT
** * * * *
8375162 AAAAGTGGATTAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAATTTAATATA-CCAT
128 AAAAGTGGAACAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAATATAACA-AGTCAA
* * *
8375226 TTAAGTCAAAATAAATAT-ATATTTGTGAAAATTAAAAATTTAAATTTATATATATTATCATGTT
192 TTAAGTTAAAATAAATATAATTTTTGTAAAAATTAAAAATTTAAA-TTATATATATTAT-ATGTT
* * *
8375290 AAAAGTATTTAATGAATTATAAAATTTAATTTATAAATAAA-AATGAGAATAAAAATAATCGTAG
255 AAAACTATTTAATGAATTATAAAATTTAATTTATAAATAAATAATAAGAATAAAAATAATCATAG
** * * * *
8375354 TGAAAATTAACAA-TGAAAAAAACTTGAA-GTAAATTTATAAAAATTAACGTAAAATATTATAAA
320 TGAAAAAAAACAATTG--AAAAACTTGAACATAAACTTATAAAAATTAACATAAAATATGATAAA
* * * * * *
8375417 AGTAAAAAAAATATTATTAAAATATTAACTTGAGTATGTGATATTTAAAGTAACAAGTCAATTAC
383 AGTAAAAAAAACATTATTAAAATATTAACGTAAATATGTGATATTTAAAGTAACAAATCAATTAA
*
8375482 GTCAAAATAAATATAAGTTTCATG-AAA-ATTAAATATTTAAATTTATATTATAAGTTAAAAGTA
448 GTCAAAATAAATATAA-TTT-ATGTAAATATTAAATATTTAAATTTATATTATAAGTTAAAAATA
* ** *
8375545 TTTAACGGTTTAGAAATTTTACTTTATAAATGAATAATAATAAAGATAAAAATGGTTATAGTTAA
511 TTTAACGGTTTAGAAATTTTAATTTAT-AA-GAATAATAATAAAGATAAAAATAATTATAGTGAA
* * * * * *
8375610 AATTATCAATTGTAAAACTTTAACATTAACTTGTAAGAATTAACGTAAAAAATTATAAAGATGAA
574 AATAAACAATTGTAAAACCTT-ACATTAAATTATAAAAATTAACGTAAAAAATTATAAAGATGAA
** * * * *
8375675 ACAAATATTATATTAATGTAAATTTATGAGATTTAATATAAAATGTCAACTAAGTCAAAATAAGT
638 ACAAATATTATATTAACATAAATGTATAAGATTTAAGATAAAATGTCAACTAAGTCAAAATAAAT
** *
8375740 ATATTTTTTTGTAAAAATTAAAAATTTCAATTTATATTATCAAC
703 ATAAATTTTTGTAAAAATTAAAAATTTAAATTTATATTATCAAC
* *
8375784 CTAAAAGTATTGAACAGTTT----A---TAATTTATAAATAAATAATAAT-AAGAGTAAAAATAA
1 CTAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGA-TAAAAATAA
* ** * * *
8375841 TTTTAGTGAAAATTGATTATGAAAAATACTTGACATAAACTTGTAAGAATTAAGTAAAACATTAT
65 TTATAAAGAAAATT-ATTATGAAAAAT-TTTGACATAAACTTATAAGAATTAAGTAAAAAATTAT
* * *
8375906 AAATGTGAAACAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAACATAACAAGTCAAT
128 AAAAGTGGAACAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAATATAACAAGTCAAT
* * * *
8375971 TATGTTAAAATAAATATAATTTTTGTAAAAATTAAATATTTAAA-T-T-TATCTTATGTGTTAAA
193 TAAGTTAAAATAAATATAATTTTTGTAAAAATTAAAAATTTAAATTATATATATTATATGTTAAA
* * * * *
8376033 ATTATTTAATGATTTACAAAATTTAA-TTATAAATAAATAATAATAATGAAAAAATAATTATAGT
258 ACTATTTAATGAATTATAAAATTTAATTTATAAATAAATAATAAGAAT--AAAAATAATCATAGT
8376097 TAAGGTTTTA
Statistics
Matches: 882, Mismatches: 142, Indels: 90
0.79 0.13 0.08
Matches are distributed among these distances:
739 11 0.01
740 37 0.04
741 7 0.01
742 14 0.02
743 2 0.00
744 91 0.10
745 89 0.10
746 1 0.00
747 38 0.04
748 217 0.25
749 116 0.13
750 116 0.13
751 13 0.01
752 55 0.06
753 9 0.01
754 55 0.06
755 9 0.01
756 2 0.00
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (746 bp):
CTAAAAGTATTTAACGGTTTACAAATTTTAATTTATAAATAAATAATAATAAAGATAAAAATAAT
TATAAAGAAAATTATTATGAAAAATTTTGACATAAACTTATAAGAATTAAGTAAAAAATTATAAA
AGTGGAACAAAAATTATTAAAATATTAACTTAAATGTGTGAGATTTAATATAACAAGTCAATTAA
GTTAAAATAAATATAATTTTTGTAAAAATTAAAAATTTAAATTATATATATTATATGTTAAAACT
ATTTAATGAATTATAAAATTTAATTTATAAATAAATAATAAGAATAAAAATAATCATAGTGAAAA
AAAACAATTGAAAAACTTGAACATAAACTTATAAAAATTAACATAAAATATGATAAAAGTAAAAA
AAACATTATTAAAATATTAACGTAAATATGTGATATTTAAAGTAACAAATCAATTAAGTCAAAAT
AAATATAATTTATGTAAATATTAAATATTTAAATTTATATTATAAGTTAAAAATATTTAACGGTT
TAGAAATTTTAATTTATAAGAATAATAATAAAGATAAAAATAATTATAGTGAAAATAAACAATTG
TAAAACCTTACATTAAATTATAAAAATTAACGTAAAAAATTATAAAGATGAAACAAATATTATAT
TAACATAAATGTATAAGATTTAAGATAAAATGTCAACTAAGTCAAAATAAATATAAATTTTTGTA
AAAATTAAAAATTTAAATTTATATTATCAAC
Found at i:8376306 original size:11 final size:12
Alignment explanation
Indices: 8376272--8376312 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
8376262 ACTTTAATGT
8376272 AAATT-TAT-AA
1 AAATTATATAAA
8376282 AAATTAATATAAA
1 AAATT-ATATAAA
8376295 AAATTATA-AAA
1 AAATTATATAAA
8376306 AAATTAT
1 AAATTAT
8376313 TTAATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 5 0.18
11 10 0.36
12 6 0.21
13 7 0.25
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAATTATATAAA
Found at i:8379650 original size:15 final size:15
Alignment explanation
Indices: 8379630--8379676 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
8379620 TCAAGGATCC
8379630 TGCAAACTTTGGGAT
1 TGCAAACTTTGGGAT
8379645 TGCAAACTTTGGGAT
1 TGCAAACTTTGGGAT
8379660 TGCAAACTTTGGGAT
1 TGCAAACTTTGGGAT
8379675 TG
1 TG
8379677 ATATTCAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.34
Consensus pattern (15 bp):
TGCAAACTTTGGGAT
Found at i:8383391 original size:2 final size:2
Alignment explanation
Indices: 8383386--8383416 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8383376 TCTCTCTCTC
8383386 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8383417 TCTCTCTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8395305 original size:12 final size:12
Alignment explanation
Indices: 8395288--8395316 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8395278 ACGTAAAATA
8395288 ATAAAAATTAAT
1 ATAAAAATTAAT
8395300 ATAAAAATTAAT
1 ATAAAAATTAAT
8395312 A-AAAA
1 ATAAAA
8395317 TAAAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
ATAAAAATTAAT
Found at i:8395315 original size:21 final size:21
Alignment explanation
Indices: 8395282--8395324 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8395272 TTTTTAACGT
* *
8395282 AAAATAATAAAAATTAATATA
1 AAAATAATAAAAAATAAAATA
8395303 AAAATTAAT-AAAAATAAAATA
1 AAAA-TAATAAAAAATAAAATA
8395324 A
1 A
8395325 TTAAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAATAAAAAATAAAATA
Found at i:8395786 original size:20 final size:19
Alignment explanation
Indices: 8395752--8395797 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
8395742 AAAGATGGAA
*
8395752 TAAC-TAAATTTTAAATCT
1 TAACGTAAATTTTAAAACT
*
8395770 TAACGTAAATATTTAAAAGT
1 TAACGTAAAT-TTTAAAACT
8395790 TAACGTAA
1 TAACGTAA
8395798 TAAGTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 4 0.17
19 5 0.21
20 15 0.62
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.37
Consensus pattern (19 bp):
TAACGTAAATTTTAAAACT
Found at i:8396986 original size:251 final size:250
Alignment explanation
Indices: 8396394--8397663 Score: 1297
Period size: 251 Copynumber: 5.1 Consensus size: 250
8396384 AAATTTTTAA
* * * * *
8396394 ATAAAAATAATTATAGTTCAAAATTGACATAGATAAATCTTGACGTAAAACTGTAAGAATTGAAG
1 ATAAAAATAATTATAGTTCAAAATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTGACG
* * * * ** **
8396459 TAAAAACTTATGAAGGTAGAATAACTAAATTTCAAATTTTAACATAAACGTGTAAGAGTTAACGA
66 TAAAAACTTATAAAGGTAGAATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAACCT
* *
8396524 AATAAGTCAATTAAAT-AAAAAATATAATTTTCA-TAAAAAATAAATATTTAAATTTATATTCTC
131 AATAAGTCAATTAAGTAAAAAAATCTAATTTT-AGTAAAAAATAAATATTTAAATTTATATTCTC
** * * * *
8396587 TTACTAAATGTGTTTAATGATATACAAATTTTATTTTTTAAATAAAAAATAATAAAG
195 AAATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAAT-AAG
* * * * * *
8396644 ATAAAAATAACTATAGTTTAAAATTGATAAAGATAAGTTTTAACATAAAATTGTAACAATTGACG
1 ATAAAAATAATTATAGTTCAAAATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTGACG
* * ** **
8396709 TAAAAACTTATAAAAGT-GCAATAACTAAATTTTAAATCTTAACGTAAATGTGTGCGAACTAACC
66 TAAAAACTTATAAAGGTAG-AATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAACC
* * * *
8396773 TAACAAGTCAATTAAGTAACAAAAATCTAATTTTAGTGAAAAACAAACATTTAAATTTATATTCT
130 TAATAAGTCAATTAAGTAA-AAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCT
* * *
8396838 CAAAATAAAAGTGTTTAACGATATTCAAAATTTAATTTTTAAATAAAAAATAATAAG
194 CAAATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAATAAG
* * * * *
8396895 ATAAAAATAATTATAATTCAAAATTGACATAGACAAATTTTGAGGTAAAATTGTAAGAATTGACG
1 ATAAAAATAATTATAGTTCAAAATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTGACG
* * * * * * **
8396960 TAAAAACTTAGAAAGGTAGGATAACTAAATTTTAAATCTTAATGCAAATATGTGAGAATTAAAGT
66 TAAAAACTTATAAAGGTAGAATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAACCT
* * *
8397025 AACAAGTCAATTAAGTAAAAAAATTTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCG
131 AATAAGTCAATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCA
* * *
8397090 AATTAAAAATGTTTAACGATATACAAATTTTAATTTTTAACTAAAGAATAATAAGG
196 AATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAATAA-G
* ** * * *
8397146 TTAAAAATAATTATAGTTCAAAATTGATATAGATAAACCTTGACATGAAATTATAACAATTGAAC
1 ATAAAAATAATTATAGTTCAAAATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTG-AC
* * * *
8397211 -TAAAAATTTATAAAGATGGAATAACTAAATTTTAAATCTTAAAGTAAATATGTAAGAGTTAACG
65 GTAAAAACTTATAAAGGTAGAATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAAC-
8397275 C-AATAAGTCAATTAAGTAAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTC
129 CTAATAAGTCAATTAAGT-AAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTC
* * * * * * *
8397339 TTAAGTTAAAAGTATTTAATGATATATAAATTTTAATTTTAAAAT-AATAATAAT-A-
193 TCAAATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAATAAG
* ** * * * * ** * * * * *
8397394 ATTATTATTATTATAATT-AAGACTTGATATAAATAAGCTTTAAAGTAAAACTATAA-TA-TGAC
1 ATAAAAATAATTATAGTTCAA-AATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTGAC
* * * * * * *
8397456 GTAAAAATTTATAAATGTAAAATAATTATATTTTAAATCTTAACGTAAATATGTTAGAGTTAACT
65 GTAAAAACTTATAAAGGTAGAATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAACC
* * * ** * *
8397521 TAATAAGTCAATTAAGTAAAAAAATCTAATTTTAATGAAAAACAAGCATTTATATTTATATTATC
130 TAATAAGTCAATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTC
**** * * * * ** * *
8397586 GGGCTAAAAGTATGTATCAATATGTAAATTTTTA-TTTTAAATAAAAAATAATAAAA
195 AAATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAAT-AAG
**
8397642 ATAATGATAATTATAGTT-AAAA
1 ATAAAAATAATTATAGTTCAAAA
8397664 GTTAATATTG
Statistics
Matches: 852, Mismatches: 152, Indels: 35
0.82 0.15 0.03
Matches are distributed among these distances:
244 7 0.01
245 75 0.09
246 73 0.09
247 5 0.01
248 54 0.06
249 1 0.00
250 210 0.25
251 258 0.30
252 169 0.20
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (250 bp):
ATAAAAATAATTATAGTTCAAAATTGATATAGATAAATTTTGACGTAAAATTGTAACAATTGACG
TAAAAACTTATAAAGGTAGAATAACTAAATTTTAAATCTTAACGTAAATATGTAAGAGTTAACCT
AATAAGTCAATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCA
AATTAAAAGTGTTTAACGATATACAAATTTTAATTTTTAAATAAAAAATAATAAG
Found at i:8397687 original size:978 final size:968
Alignment explanation
Indices: 8395731--8397741 Score: 2179
Period size: 978 Copynumber: 2.1 Consensus size: 968
8395721 AGAATTAATA
* * * *
8395731 TAAAAACTTAT-AAAGATGGAATAACTAAATTTTAAATCTTAACGTAAATAT-TTAAAAGTTAAC
1 TAAAAACTTATAAAAG-TGAAATAACTAAATTTTAAATCTTAACGTAAATGTGTGAAAAGCTAAC
* * * * *
8395794 GTAATAAGTTAATTAAGTAAAAAAAATTAATTTTAATAAAAAAATAAACATTTATATTTATATTA
65 CTAACAAGTCAATTAAGTAAAAAAAATTAATTTTAATAAAAAAACAAACATTTAAATTTATATTA
** * * * * * *
8395859 ACGGATTAAAAGTATGTAATGATATTCAAACTTTCATTTTTAAGTGAAAATAATAAGAATAAAAA
130 ACAAAATAAAAGTATGTAACGATATTCAAAATTTAATTTTTAAATAAAAATAATAAGAATAAAAA
* * * *
8395924 TACTTATAGTTCAATATTAATATAAAAAAGTTTTAACGTAAAATTATAAGAATTGAAGTAAAAAC
195 TAATTATAATTCAAAATTAACATAAAAAAGTTTTAACGTAAAATTATAAGAATTGAAGTAAAAAC
* * *
8395989 TTATAAAAGTGGAATAACTAAATTTTAAATCTTAACGCAAATGTGTGAGAATTAACGTAACAAGT
260 TTAGAAAAGTGGAATAACTAAATTTTAAATCTTAACGCAAATATGTGAGAATTAAAGTAACAAGT
* * ** *
8396054 TAATTAAGTAAAAAAATCTAATTTTAGTACAAAATATTTATTTAAATTTATATTTTCAGATTAAA
325 CAATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCAGATTAAA
* * * *
8396119 AGTGTTTAAGGATATATAAATTTTAATTTTTTTAAAAAATAATAAAAATAATTATAATTCAAAAT
390 AATGTTTAACGATATACAAATTTTAATTTTTTAAAAAAATAATAAAAATAATTATAATTCAAAAT
* * * * *
8396184 GAACATAAAAAAATATTGACGTAAAACTGTAAGAATTGACGTACAAATTTATAAAAGTGAAATAA
455 GAACATAAAAAAACATTGACATAAAACTATAACAATTGACGTAAAAATTTATAAAAGTGAAATAA
* * * *
8396249 TTAAATTTTAAATCTTAACATAAATACGTGAGAGCTAACATAACAAGTTAATTAAATAAAAAAAT
520 CTAAATTTTAAATCTTAACATAAATACGTAAGAGCTAACACAACAAGTCAATTAAATAAAAAAAT
** *
8396314 CTAATTTTACTGTAAAATAAATATTTAAATTTATATTCTCAGAATAAAAGTATTTAACATATATA
585 CTAATTTTACTAAAAAATAAATATTTAAATTTATATTCTAAGAATAAAAGTATTTAACATATATA
* * *
8396379 AATTTAAATTTTTAAATAAAAATAATTATAGTTCAAAATTGACATAGATAAATCTTGACGTAAAA
650 AATTTAAATTTTAAAATAAAAATAATTATAGTTCAAAATTGACATAGATAAATCTTAAAGTAAAA
* * * * *
8396444 CTGTAAGAATTGAAGTAAAAACTTATGAAGGTAGAATAACTAAATTTCAAATTTTAACATAAACG
715 CTATAAGAATTGAAGTAAAAACTTATAAAGGTAAAATAACTAAATTTCAAATCTTAACATAAACA
* * *
8396509 TGTAAGAGTTAACGAAATAAGTCAATTAAATAAAAAATATAATTTTCATAAAAAATAAATATTTA
780 TGTAAGAGTTAACGAAATAAGTCAATTAAATAAAAAATATAATTTTAATAAAAAACAAACATTTA
* ** * * * * *
8396574 AATTTATATTCTCTTACTAAATGTGTTTAATGATATACAAATTTTATTTTTTAAATAAAAAATAA
845 AATTTATATTATCGGACTAAAAGTATGTAATAATATACAAATTTTATATTTTAAATAAAAAATAA
* * *
8396639 TAAAGATAAAAATAACTATAGTTTAAAATTGATAAAGATAAGTTTTAACATAAAATTGTAACAAT
910 TAAAAATAAAAATAACTATAGTTTAAAA-TGAT----ATAAGTATT---AGAAAA-TG-AAC-AT
8396704 TGACG
964 TGACG
* **
8396709 TAAAAACTTATAAAAGTGCAATAACTAAATTTTAAATCTTAACGTAAATGTGTGCGAA-CTAACC
1 TAAAAACTTATAAAAGTGAAATAACTAAATTTTAAATCTTAACGTAAATGTGTGAAAAGCTAACC
* * * *
8396773 TAACAAGTCAATTAAGTAACAAAAATCTAATTTTAGT-GAAAAACAAACATTTAAATTTATATTC
66 TAACAAGTCAATTAAGTAAAAAAAAT-TAATTTTAATAAAAAAACAAACATTTAAATTTATATTA
* * *
8396837 TCAAAATAAAAGTGTTTAACGATATTCAAAATTTAATTTTTAAATAAAAAATAATAAG-ATAAAA
130 ACAAAATAAAAGTATGTAACGATATTCAAAATTTAATTTTTAAAT-AAAAATAATAAGAATAAAA
* * * * * *
8396901 ATAATTATAATTCAAAATTGACATAGACAAA-TTTTGAGGTAAAATTGTAAGAATTGACGTAAAA
194 ATAATTATAATTCAAAATTAACATA-AAAAAGTTTTAACGTAAAATTATAAGAATTGAAGTAAAA
* *
8396965 ACTTAGAAAGGTAGG-ATAACTAAATTTTAAATCTTAATGCAAATATGTGAGAATTAAAGTAACA
258 ACTTAGAAAAGT-GGAATAACTAAATTTTAAATCTTAACGCAAATATGTGAGAATTAAAGTAACA
*
8397029 AGTCAATTAAGTAAAAAAATTTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTC-GAAT
322 AGTCAATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCAG-AT
8397093 TAAAAATGTTTAACGATATACAAATTTTAATTTTTAACTAAAGAATAATAAGGTTAAAAATAATT
386 TAAAAATGTTTAACGATATACAAATTTTAATTTTT---TAAA-AA-AATAA---TAAAAATAATT
* * * * * * *
8397158 ATAGTTCAAAATTG-ATATAGATAAACCTTGACATGAAATTATAACAATTGAAC-TAAAAATTTA
443 ATAATTCAAAA-TGAACATAAAAAAACATTGACATAAAACTATAACAATTG-ACGTAAAAATTTA
* * * * *
8397221 T-AAAGATGGAATAACTAAATTTTAAATCTTAA-AGTAAATATGTAAGAGTTAACGCAATAAGTC
506 TAAAAG-TGAAATAACTAAATTTTAAATCTTAACA-TAAATACGTAAGAGCTAACACAACAAGTC
* * *
8397284 AATTAAGTAAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTTAAG-TTAA
569 AATTAAAT-AAAAAAATCTAATTTTACTAAAAAATAAATATTTAAATTTATATTC-TAAGAATAA
* * * * *
8397348 AAGTATTTAATGATATATAAATTTTAATTTTAAAATAATAATAATAATTATTATTATTATAATTA
632 AAGTATTTAA-CATATATAAATTTAAATTTTAAAAT-A-AA-AATAATTA-TAGT-TCAAAATT-
* * * * * *
8397413 AGACTTGATATAAATAAGCTTTAAAGTAAAACTATAA-TA-TGACGTAAAAATTTATAAATGTAA
690 -GACAT-AGATAAAT---C-TTAAAGTAAAACTATAAGAATTGAAGTAAAAACTTATAAAGGTAA
* * * * * * ** *
8397476 AATAATTATATTTTAAATCTTAACGTAAATATGTTAGAGTTAACTTAATAAGTCAATTAAGTAAA
749 AATAACTAAATTTCAAATCTTAACATAAACATGTAAGAGTTAACGAAATAAGTCAATTAAAT-AA
* * * * *
8397541 AAAATCTAATTTTAATGAAAAACAAGCATTTATATTTATATTATCGGGCTAAAAGTATGT-ATCA
813 AAAATATAATTTTAATAAAAAACAAACATTTAAATTTATATTATCGGACTAAAAGTATGTAAT-A
** ** *
8397605 ATATGTAAATTTT-TATTTTAAATAAAAAATAATAAAAATAATGATAATTATAG-TTAAAA-G-T
877 ATATACAAATTTTATATTTTAAATAAAAAATAATAAAAATAAAAATAACTATAGTTTAAAATGAT
*
8397666 -TAA-TATT-GAAAA-G-GC-TTGACG
942 ATAAGTATTAGAAAATGAACATTGACG
* * *
8397687 TAAAATA-TTATAAAAGTGAAATAAACT-AATTTAAAATTTTAACATAAATGTGTGA
1 TAAAA-ACTTATAAAAGTGAAAT-AACTAAATTTTAAATCTTAACGTAAATGTGTGA
8397742 GAGTTAACGT
Statistics
Matches: 859, Mismatches: 136, Indels: 76
0.80 0.13 0.07
Matches are distributed among these distances:
977 1 0.00
978 377 0.44
979 38 0.04
980 1 0.00
981 3 0.00
982 3 0.00
983 5 0.01
984 4 0.00
985 5 0.01
986 110 0.13
987 60 0.07
988 28 0.03
989 4 0.00
990 2 0.00
991 8 0.01
992 3 0.00
993 6 0.01
994 1 0.00
995 5 0.01
996 7 0.01
997 6 0.01
998 107 0.12
999 61 0.07
1000 14 0.02
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (968 bp):
TAAAAACTTATAAAAGTGAAATAACTAAATTTTAAATCTTAACGTAAATGTGTGAAAAGCTAACC
TAACAAGTCAATTAAGTAAAAAAAATTAATTTTAATAAAAAAACAAACATTTAAATTTATATTAA
CAAAATAAAAGTATGTAACGATATTCAAAATTTAATTTTTAAATAAAAATAATAAGAATAAAAAT
AATTATAATTCAAAATTAACATAAAAAAGTTTTAACGTAAAATTATAAGAATTGAAGTAAAAACT
TAGAAAAGTGGAATAACTAAATTTTAAATCTTAACGCAAATATGTGAGAATTAAAGTAACAAGTC
AATTAAGTAAAAAAATCTAATTTTAGTAAAAAATAAATATTTAAATTTATATTCTCAGATTAAAA
ATGTTTAACGATATACAAATTTTAATTTTTTAAAAAAATAATAAAAATAATTATAATTCAAAATG
AACATAAAAAAACATTGACATAAAACTATAACAATTGACGTAAAAATTTATAAAAGTGAAATAAC
TAAATTTTAAATCTTAACATAAATACGTAAGAGCTAACACAACAAGTCAATTAAATAAAAAAATC
TAATTTTACTAAAAAATAAATATTTAAATTTATATTCTAAGAATAAAAGTATTTAACATATATAA
ATTTAAATTTTAAAATAAAAATAATTATAGTTCAAAATTGACATAGATAAATCTTAAAGTAAAAC
TATAAGAATTGAAGTAAAAACTTATAAAGGTAAAATAACTAAATTTCAAATCTTAACATAAACAT
GTAAGAGTTAACGAAATAAGTCAATTAAATAAAAAATATAATTTTAATAAAAAACAAACATTTAA
ATTTATATTATCGGACTAAAAGTATGTAATAATATACAAATTTTATATTTTAAATAAAAAATAAT
AAAAATAAAAATAACTATAGTTTAAAATGATATAAGTATTAGAAAATGAACATTGACG
Found at i:8398430 original size:22 final size:22
Alignment explanation
Indices: 8398405--8398450 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
8398395 GCTAAATGAC
8398405 ATGCATATTC-TATTATAATAAT
1 ATGCATA-TCGTATTATAATAAT
*
8398427 ATGCATATCGTTTTATAATAAT
1 ATGCATATCGTATTATAATAAT
8398449 AT
1 AT
8398451 ACAGACAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.46
Consensus pattern (22 bp):
ATGCATATCGTATTATAATAAT
Found at i:8399720 original size:20 final size:19
Alignment explanation
Indices: 8399695--8399740 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
8399685 TAAAGATCAG
8399695 TTATTTAGC-TGTTGTTTTT
1 TTATTTA-CTTGTTGTTTTT
*
8399714 ATTATTTACTTTTTGTTTTT
1 -TTATTTACTTGTTGTTTTT
8399734 TTATTTA
1 TTATTTA
8399741 TTTTTAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.15, C:0.04, G:0.09, T:0.72
Consensus pattern (19 bp):
TTATTTACTTGTTGTTTTT
Found at i:8399753 original size:22 final size:20
Alignment explanation
Indices: 8399706--8399745 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8399696 TATTTAGCTG
8399706 TTGTTTTTATTATTTACTTT
1 TTGTTTTTATTATTTACTTT
8399726 TTGTTTTT-TTATTTA-TTT
1 TTGTTTTTATTATTTACTTT
8399744 TT
1 TT
8399746 AATTGTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 5 0.25
19 7 0.35
20 8 0.40
ACGTcount: A:0.12, C:0.03, G:0.05, T:0.80
Consensus pattern (20 bp):
TTGTTTTTATTATTTACTTT
Found at i:8406286 original size:25 final size:24
Alignment explanation
Indices: 8406249--8406301 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
8406239 TAAAATGATA
* *
8406249 AATTTATTTTAATTA-ATTATAGTT
1 AATTAATTTTAATTATA-AATAGTT
8406273 AATTAATTATTAATTATAAATAGTT
1 AATTAATT-TTAATTATAAATAGTT
8406298 AATT
1 AATT
8406302 TAAAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.28
25 17 0.68
26 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
AATTAATTTTAATTATAAATAGTT
Found at i:8406299 original size:21 final size:21
Alignment explanation
Indices: 8406260--8406301 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8406250 ATTTATTTTA
**
8406260 ATTAATTATAGTTAATTAATT
1 ATTAATTATAAATAATTAATT
*
8406281 ATTAATTATAAATAGTTAATT
1 ATTAATTATAAATAATTAATT
8406302 TAAAATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
ATTAATTATAAATAATTAATT
Found at i:8413493 original size:34 final size:34
Alignment explanation
Indices: 8413450--8413515 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
8413440 CTAATAATTT
* *
8413450 GATATTATGAACATAATTTAAACTTGTTTTTTAA
1 GATATTATGAACATAATTCAAACGTGTTTTTTAA
8413484 GATATTATGAACATAATTCAAACGTGTTTTTT
1 GATATTATGAACATAATTCAAACGTGTTTTTT
8413516 TTTAAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (34 bp):
GATATTATGAACATAATTCAAACGTGTTTTTTAA
Found at i:8433270 original size:101 final size:98
Alignment explanation
Indices: 8433103--8433291 Score: 306
Period size: 101 Copynumber: 1.9 Consensus size: 98
8433093 ATTATTATAC
*
8433103 GTACTTAACTTGAAAAGATTGTCCCCAACACTAAACAATGCACCGGCATAGCCGCATAGCGGCAT
1 GTACTTAACTTGAAAAGATTGTCCCCAACACTAAACAATGCACCGGCACAGCCGCATAGCGGCAT
* *
8433168 CTAACTTGTAGTGTATATATATATATATATTACAA
66 CTAACCTGT-G-ATATATATATATATATATTACAA
* *
8433203 GTACTTAACTTGGAAAGATTGTCCCCTAACACTAAACAATGCACCGGCACAGCCGCATAGCGTCA
1 GTACTTAACTTGAAAAGATTGTCCCC-AACACTAAACAATGCACCGGCACAGCCGCATAGCGGCA
8433268 TCTAACCTGTGATATATATATATA
65 TCTAACCTGTGATATATATATATA
8433292 ACATATGTAC
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
99 12 0.14
100 26 0.31
101 45 0.54
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (98 bp):
GTACTTAACTTGAAAAGATTGTCCCCAACACTAAACAATGCACCGGCACAGCCGCATAGCGGCAT
CTAACCTGTGATATATATATATATATATTACAA
Found at i:8434720 original size:24 final size:24
Alignment explanation
Indices: 8434675--8434721 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8434665 CCCTTTCAAT
* *
8434675 TTTTGTTTATTTTTTACGTTTTTA
1 TTTTGTTTATATTTTACATTTTTA
8434699 TTTTGTTTAATATTTTA-ATTTTT
1 TTTTGTTT-ATATTTTACATTTTT
8434722 TTAAGCTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.74
Consensus pattern (24 bp):
TTTTGTTTATATTTTACATTTTTA
Found at i:8434721 original size:25 final size:24
Alignment explanation
Indices: 8434675--8434722 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
8434665 CCCTTTCAAT
* *
8434675 TTTTGTTTATTTTTTACGTTTTTA
1 TTTTGTTTATATTTTAAGTTTTTA
*
8434699 TTTTGTTTAATATTTTAATTTTTT
1 TTTTGTTT-ATATTTTAAGTTTTT
8434723 TAAGCTGGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.75
Consensus pattern (24 bp):
TTTTGTTTATATTTTAAGTTTTTA
Found at i:8435511 original size:28 final size:28
Alignment explanation
Indices: 8435478--8435544 Score: 134
Period size: 28 Copynumber: 2.4 Consensus size: 28
8435468 GCATTGACAT
8435478 GTCAACATTGTTCACATGTCAGTGCCAC
1 GTCAACATTGTTCACATGTCAGTGCCAC
8435506 GTCAACATTGTTCACATGTCAGTGCCAC
1 GTCAACATTGTTCACATGTCAGTGCCAC
8435534 GTCAACATTGT
1 GTCAACATTGT
8435545 CATGAAATCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (28 bp):
GTCAACATTGTTCACATGTCAGTGCCAC
Found at i:8445648 original size:6 final size:6
Alignment explanation
Indices: 8445637--8445670 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
8445627 TGATGTTGTG
8445637 GCTGAT GCTGAT GCTGAT GCTGAT GCTGAT GCTG
1 GCTGAT GCTGAT GCTGAT GCTGAT GCTGAT GCTG
8445671 TTGTCGCTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.18, G:0.35, T:0.32
Consensus pattern (6 bp):
GCTGAT
Found at i:8449781 original size:37 final size:37
Alignment explanation
Indices: 8449731--8449801 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
8449721 TTATAGCGTG
8449731 CTTTTGTTTGTTAGTTCAGATGAGCAAACAGCAAGTA
1 CTTTTGTTTGTTAGTTCAGATGAGCAAACAGCAAGTA
8449768 CTTTTGTTTGTTAGTTCAGATGAGCAAACAGCAA
1 CTTTTGTTTGTTAGTTCAGATGAGCAAACAGCAA
8449802 ATCATGCGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (37 bp):
CTTTTGTTTGTTAGTTCAGATGAGCAAACAGCAAGTA
Found at i:8468914 original size:11 final size:12
Alignment explanation
Indices: 8468885--8468924 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
8468875 ACAATAATAA
*
8468885 TTATTATTATTT
1 TTATAATTATTT
8468897 TTATAATTATTT
1 TTATAATTATTT
8468909 TT-TAATTATTT
1 TTATAATTATTT
8468920 TTATA
1 TTATA
8468925 TAAAATTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 11 0.42
12 15 0.58
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATAATTATTT
Found at i:8468933 original size:23 final size:23
Alignment explanation
Indices: 8468890--8468938 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
8468880 AATAATTATT
* * *
8468890 ATTATTTTTATAATTATTTTTTA
1 ATTATTTTTATAATAAATTTTGA
8468913 ATTATTTTTAT-ATAAAATTTTGA
1 ATTATTTTTATAAT-AAATTTTGA
8468936 ATT
1 ATT
8468939 CGCCATTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
ATTATTTTTATAATAAATTTTGA
Found at i:8475269 original size:30 final size:31
Alignment explanation
Indices: 8475233--8475300 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
8475223 GTTAATCATT
*
8475233 AATTATAAAAG-CTTATTT-GATTCAGAATAA
1 AATTATAAAAGACTTATTTAG-TTCAAAATAA
*
8475263 AATTAT-AAGGACTTATTTAGTTCAAAATAA
1 AATTATAAAAGACTTATTTAGTTCAAAATAA
*
8475293 AAGTATAA
1 AATTATAA
8475301 GTACTTGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
29 3 0.09
30 27 0.84
31 2 0.06
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (31 bp):
AATTATAAAAGACTTATTTAGTTCAAAATAA
Found at i:8475301 original size:30 final size:30
Alignment explanation
Indices: 8475244--8475341 Score: 94
Period size: 30 Copynumber: 3.3 Consensus size: 30
8475234 ATTATAAAAG
* *
8475244 CTTATTTGATTCAGAATAAAATTATAAGGA
1 CTTATTTGATTCAAAATAAAAGTATAAGGA
*
8475274 CTTATTT-AGTTCAAAATAAAAGTATAAGTA
1 CTTATTTGA-TTCAAAATAAAAGTATAAGGA
* ** *
8475304 CTTGA-TTGA-ACGTAATAAAAGTATAAGGG
1 CTT-ATTTGATTCAAAATAAAAGTATAAGGA
8475333 CTTATTTGA
1 CTTATTTGA
8475342 ATTTTTTGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
28 1 0.02
29 23 0.41
30 30 0.54
31 2 0.04
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (30 bp):
CTTATTTGATTCAAAATAAAAGTATAAGGA
Found at i:8481489 original size:20 final size:21
Alignment explanation
Indices: 8481450--8481489 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8481440 AATTATATGA
*
8481450 AGATACATTAGTTTTTAAAAT
1 AGATACATTAGTTTTAAAAAT
*
8481471 AGATAC-TTCGTTTTAAAAA
1 AGATACATTAGTTTTAAAAA
8481490 AATATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (21 bp):
AGATACATTAGTTTTAAAAAT
Done.