Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397273.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_239.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3496717
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 46782 characters in sequence are not A, C, G, or T
File 1 of 9
Found at i:8786 original size:2 final size:2
Alignment explanation
Indices: 8779--8804 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8769 TTCCATGAAA
8779 AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG
8805 GAACCAGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:12177 original size:15 final size:15
Alignment explanation
Indices: 12157--12198 Score: 66
Period size: 16 Copynumber: 2.7 Consensus size: 15
12147 GCAATTACAG
12157 GTAATGTGATTGCAA
1 GTAATGTGATTGCAA
12172 GTAATGTGGATTGCAA
1 GTAATGT-GATTGCAA
*
12188 GCAATGTGATT
1 GTAATGTGATT
12199 ACAGGGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (15 bp):
GTAATGTGATTGCAA
Found at i:12424 original size:21 final size:21
Alignment explanation
Indices: 12400--12535 Score: 66
Period size: 21 Copynumber: 6.4 Consensus size: 21
12390 TTCTTAAATA
12400 TATTTTTAATATCATATATTT
1 TATTTTTAATATCATATATTT
*
12421 TATTTTTATTTATTATTATATATTT
1 TATTTTTA---A-TATCATATATTT
* * * *
12446 TATATTTATTTTAATATATTT
1 TATTTTTAATATCATATATTT
* *
12467 AATATTTTATTAT-A-AT-TTT
1 TAT-TTTTAATATCATATATTT
** * * *
12486 TATATAATACATTTC-TA-AATA
1 TAT-TTTTA-ATATCATATATTT
12507 TATTTTTAATATCATATATTT
1 TATTTTTAATATCATATATTT
12528 TATTTTTA
1 TATTTTTA
12536 TTTATATTAT
Statistics
Matches: 84, Mismatches: 20, Indels: 22
0.67 0.16 0.17
Matches are distributed among these distances:
19 13 0.15
20 9 0.11
21 36 0.43
22 7 0.08
24 1 0.01
25 18 0.21
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTAATATCATATATTT
Found at i:12433 original size:53 final size:52
Alignment explanation
Indices: 12376--12642 Score: 228
Period size: 53 Copynumber: 5.1 Consensus size: 52
12366 ATTATTAATT
12376 TTTATATAAATCATTTCTTAAATATATTTTTAATATCATATATTTTATTTTTA
1 TTTATATAAATCATTT-TTAAATATATTTTTAATATCATATATTTTATTTTTA
* * * * *
12429 TTTAT-TATTAT-ATATTTTATATTTA-TTTTAATAT-ATTTAATATTTTATTATAA
1 TTTATATA-AATCAT-TTTTAAATATATTTTTAATATCA--T-ATATTTTATTTTTA
* *
12482 TTTTTATATAATACATTTCTAAATATATTTTTAATATCATATATTTTATTTTTA
1 TTTATATA-AAT-CATTTTTAAATATATTTTTAATATCATATATTTTATTTTTA
* * * * * * * **
12536 TTTATAT-TATAATATTTATATTTATTTTTAATAT-ATTTATATTATTAAT-
1 TTTATATAAATCATTTTTAAATATATTTTTAATATCATATATTTTATTTTTA
12585 TTTATATAATATCATATTTTAAATATATTTTTAGAT-TCATATATTTTA-TTTTA
1 TTTATATAA-ATCAT-TTTTAAATATATTTTTA-ATATCATATATTTTATTTTTA
12638 TTTAT
1 TTTAT
12643 TATTATATTT
Statistics
Matches: 166, Mismatches: 32, Indels: 32
0.72 0.14 0.14
Matches are distributed among these distances:
49 7 0.04
50 12 0.07
51 32 0.19
52 31 0.19
53 40 0.24
54 23 0.14
55 9 0.05
56 11 0.07
57 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (52 bp):
TTTATATAAATCATTTTTAAATATATTTTTAATATCATATATTTTATTTTTA
Found at i:12527 original size:107 final size:107
Alignment explanation
Indices: 12362--12667 Score: 438
Period size: 107 Copynumber: 2.9 Consensus size: 107
12352 TTAATTTTTT
12362 TTTTATTATTAATTTTTATATAA-ATCATTTCTTAAATATATTTTTAATATCATATATTTTATTT
1 TTTTATTA-TAATTTTTATATAATATCATTTC-TAAATATATTTTTAATATCATATATTTTATTT
12426 TTATTTATTATTATATATTTTATATTTATTTTAATATATTTAATA
64 TTATTTATTATTATATATTTTATATTTATTTTAATATATTT-ATA
12471 TTTTATTATAATTTTTATATAATA-CATTTCTAAATATATTTTTAATATCATATATTTTATTTTT
1 TTTTATTATAATTTTTATATAATATCATTTCTAAATATATTTTTAATATCATATATTTTATTTTT
12535 ATTTA-TATTATA-ATATTTATATTTATTTTTAATATATTTATA
66 ATTTATTATTATATAT-TTTATATTTA-TTTTAATATATTTATA
*
12577 --TTA-T-TAA-TTTTATATAATATCATATTTTAAATATATTTTTAGAT-TCATATATTTTA-TT
1 TTTTATTATAATTTTTATATAATATCAT-TTCTAAATATATTTTTA-ATATCATATATTTTATTT
*
12635 TTATTTATTATTATAT-TTATATATTTTATTTTA
64 TTATTTATTATTATATATTTTATA-TTTATTTTA
12668 TTTCTTTATA
Statistics
Matches: 186, Mismatches: 2, Indels: 25
0.87 0.01 0.12
Matches are distributed among these distances:
101 12 0.06
102 25 0.13
103 41 0.22
104 5 0.03
105 2 0.01
106 20 0.11
107 52 0.28
108 20 0.11
109 9 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (107 bp):
TTTTATTATAATTTTTATATAATATCATTTCTAAATATATTTTTAATATCATATATTTTATTTTT
ATTTATTATTATATATTTTATATTTATTTTAATATATTTATA
Found at i:12573 original size:35 final size:34
Alignment explanation
Indices: 12427--12702 Score: 124
Period size: 35 Copynumber: 7.7 Consensus size: 34
12417 ATTTTATTTT
12427 TATTTATTATTATATATTTTATATTTA-TTTTAATA
1 TATTTA-TATTATATA-TTTATATTTATTTTTAATA
*
12462 TATTTAATATT-T-TA-TTATAATTT-TTATATAATA
1 TATTT-ATATTATATATTTAT-ATTTATT-TTTAATA
* * * * * * *
12495 CATTTCTAAATATATTTTTAATATCATATATTTTATTTT
1 TATTTAT-ATTATATATTT-ATAT-TTAT-TTTTA-ATA
12534 TATTTATATTATAATATTTATATTTATTTTTAATA
1 TATTTATATTAT-ATATTTATATTTATTTTTAATA
12569 TATTTATATTAT-TAATTTTATATAATATCATATTTTAAATA
1 TATTTATATTATAT-A-TTTATAT--T-T-AT-TTTT-AATA
* *
12610 TATTTTTAGATTCATATATTT-TATTTTATTTATTATTA
1 TA--TTTATATT-ATATATTTATA-TTTATTT-TTAATA
* * *
12648 TATTTATA-TATTTTATTT-TATTTCTTTAT-ATA
1 TATTTATATTA-TATATTTATATTTATTTTTAATA
*
12680 TTTTTATATTATATA-TTATATTT
1 TATTTATATTATATATTTATATTT
12703 TAATTTGTTT
Statistics
Matches: 185, Mismatches: 25, Indels: 65
0.67 0.09 0.24
Matches are distributed among these distances:
31 6 0.03
32 23 0.12
33 18 0.10
34 10 0.05
35 39 0.21
36 15 0.08
37 7 0.04
38 20 0.11
39 18 0.10
40 5 0.03
41 7 0.04
42 2 0.01
43 11 0.06
44 3 0.02
45 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (34 bp):
TATTTATATTATATATTTATATTTATTTTTAATA
Found at i:12581 original size:24 final size:23
Alignment explanation
Indices: 12520--12587 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
12510 TTTTAATATC
*
12520 ATATATTTTATT-TTTATTTATA
1 ATATATTTTATTATTTATTTTTA
*
12542 TTATAATATTTA-TATTTATTTTTA
1 ATAT-AT-TTTATTATTTATTTTTA
*
12566 ATATATTTATATTATTAATTTT
1 ATATATTT-TATTATTTATTTT
12588 ATATAATATC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
22 5 0.14
23 7 0.19
24 25 0.68
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (23 bp):
ATATATTTTATTATTTATTTTTA
Found at i:12676 original size:38 final size:40
Alignment explanation
Indices: 12634--12726 Score: 113
Period size: 38 Copynumber: 2.4 Consensus size: 40
12624 TATATTTTAT
* *
12634 TTTATTTATTATTATATTTATATATTTTATTTT-ATTT-C
1 TTTATATATTATTATATTTATATATTATATTTTAATTTGC
* *
12672 TTTATATATTTTTATA-TTATATATTATATTTTAATTTGT
1 TTTATATATTATTATATTTATATATTATATTTTAATTTGC
*
12711 TTTATCTA-TATTATAT
1 TTTATATATTATTATAT
12727 AAATATTAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
37 15 0.33
38 24 0.52
39 7 0.15
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (40 bp):
TTTATATATTATTATATTTATATATTATATTTTAATTTGC
Found at i:12721 original size:43 final size:44
Alignment explanation
Indices: 12638--12721 Score: 102
Period size: 43 Copynumber: 1.9 Consensus size: 44
12628 TTTTATTTTA
* * *
12638 TTTATTATTATATTTATATATTTTATTTTATTTCTTTATATATT
1 TTTATTATTATATTTATATATTTAATTTTATTTATCTATATATT
12682 TTTA-TATTATATATTATAT-TTTAATTTGT-TTTATCTATAT
1 TTTATTATTATAT-TTATATATTTAATTT-TATTTATCTATAT
12722 TATATAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
43 24 0.69
44 11 0.31
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (44 bp):
TTTATTATTATATTTATATATTTAATTTTATTTATCTATATATT
Found at i:12743 original size:67 final size:68
Alignment explanation
Indices: 12575--12749 Score: 154
Period size: 67 Copynumber: 2.6 Consensus size: 68
12565 AATATATTTA
* ** *
12575 TATTATTA-ATTT-TATATAATA-TCATATTT-TAAATATATTTTTAGATTCATATATTTTATTT
1 TATTATTATATTTATATATAATATTTA-ATTTCTTTATATATTTTTAGATTCATATATTATATTT
12636 TATT
65 TATT
** * *
12640 TATTATTATATTTATATATTTTATTTTATTTCTTTATATATTTTTATATT-ATATATTATATTTT
1 TATTATTATATTTATATATAATATTTAATTTCTTTATATATTTTTAGATTCATATATTATATTTT
12704 AATT
66 -ATT
*
12708 TGTT-TTATCTATATTATATA-AATA-TTAATTT-TTTATAT-TTTT
1 TATTATTA--TAT-TTATATATAATATTTAATTTCTTTATATATTTT
12750 ATTTTATTTT
Statistics
Matches: 90, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
65 8 0.09
66 8 0.09
67 34 0.38
68 28 0.31
69 5 0.06
70 7 0.08
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (68 bp):
TATTATTATATTTATATATAATATTTAATTTCTTTATATATTTTTAGATTCATATATTATATTTT
ATT
Found at i:22540 original size:38 final size:38
Alignment explanation
Indices: 22468--22540 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 38
22458 CAATCTTAAC
* * * * *
22468 ATTTTTATTTTTTATATTATAAATTTATTTTTTATGAA
1 ATTTTTATTTTTTATATTAAAAAATAAATGTTTATGAA
22506 ATTTTTATTTTTTATATTAAAAAATAAATGTTTAT
1 ATTTTTATTTTTTATATTAAAAAATAAATGTTTAT
22541 ATTATTATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (38 bp):
ATTTTTATTTTTTATATTAAAAAATAAATGTTTATGAA
Found at i:23307 original size:21 final size:22
Alignment explanation
Indices: 23274--23320 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
23264 ATTCATCTGG
*
23274 TATGTTTTCGA-TT-TCTTTCT
1 TATGTTTTAGATTTCTCTTTCT
23294 TATGTTTTTAGATTTCTCTTTCT
1 TATG-TTTTAGATTTCTCTTTCT
23317 TATG
1 TATG
23321 CTTTCAAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 6 0.26
22 2 0.09
23 11 0.48
ACGTcount: A:0.13, C:0.13, G:0.11, T:0.64
Consensus pattern (22 bp):
TATGTTTTAGATTTCTCTTTCT
Found at i:23810 original size:24 final size:24
Alignment explanation
Indices: 23783--23828 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
23773 GTAATAACTT
23783 TTTTTAAC-CATGACGTGTAACATG
1 TTTTT-ACTCATGACGTGTAACATG
* *
23807 TTTTTGCTTATGACGTGTAACA
1 TTTTTACTCATGACGTGTAACA
23829 ATAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 1 0.05
24 18 0.95
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.41
Consensus pattern (24 bp):
TTTTTACTCATGACGTGTAACATG
Found at i:23964 original size:69 final size:73
Alignment explanation
Indices: 23890--24060 Score: 197
Period size: 76 Copynumber: 2.4 Consensus size: 73
23880 ATATTTTTGT
* * *
23890 ATATGGCGTGTAACAACCTAACTATAACA-T-AT-TTTTTATACATGGTGTGTAACAACATTA-T
1 ATATGGCGTGTAACAACCTAACCATAACAGTAATGTTTTTATACATAGCGTGTAACAACATTACT
*
23951 TTTTTTTA
66 TTTTTTCA
* * *
23959 ATATGGCGTGTAACAACCTAACCATGACATGTAACATGTTTTTGTACATAGCGTGTAACAATATT
1 ATATGGCGTGTAACAACCTAACCATAACA-GT-A-ATGTTTTTATACATAGCGTGTAACAACATT
24024 ACTTTTTTTCA
63 ACTTTTTTTCA
* * *
24035 ACATGGCGTGTAACAACTTAATCATA
1 ATATGGCGTGTAACAACCTAACCATA
24061 GCATATCACA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
69 27 0.32
71 1 0.01
74 2 0.02
75 24 0.29
76 30 0.36
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (73 bp):
ATATGGCGTGTAACAACCTAACCATAACAGTAATGTTTTTATACATAGCGTGTAACAACATTACT
TTTTTTCA
Found at i:24030 original size:75 final size:76
Alignment explanation
Indices: 23912--24096 Score: 221
Period size: 76 Copynumber: 2.4 Consensus size: 76
23902 ACAACCTAAC
* * * * *
23912 TATAACATATTTTTTATACATGGTGTGTAACAACATTA-TTTTTTTTAATATGGCGTGTAACAAC
1 TATAACAT-GTTTTTGTACATAGTGTGTAACAACATTACTTTTTTTCAACATGGCGTGTAACAAC
23976 CTAACCAT-GACA
65 CTAACCATAG-CA
* * * *
23988 TGTAACATGTTTTTGTACATAGCGTGTAACAATATTACTTTTTTTCAACATGGCGTGTAACAACT
1 TATAACATGTTTTTGTACATAGTGTGTAACAACATTACTTTTTTTCAACATGGCGTGTAACAACC
*
24053 TAATCATAGCA
66 TAACCATAGCA
* * *
24064 TATCACATGTTTTTGTATATAGTATGTAACAAC
1 TATAACATGTTTTTGTACATAGTGTGTAACAAC
24097 TTAACCAGAA
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
75 24 0.26
76 66 0.73
77 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (76 bp):
TATAACATGTTTTTGTACATAGTGTGTAACAACATTACTTTTTTTCAACATGGCGTGTAACAACC
TAACCATAGCA
Found at i:24092 original size:45 final size:45
Alignment explanation
Indices: 24043--24128 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
24033 CAACATGGCG
* * * * *
24043 TGTAACAACTTAATCATAGCATATCACATGTTTTTGTATATAGTA
1 TGTAACAACTTAACCAGAACATATAACATATTTTTGTATATAGTA
*
24088 TGTAACAACTTAACCAGAACATGTAACATATTTTTGTATAT
1 TGTAACAACTTAACCAGAACATATAACATATTTTTGTATAT
24129 GACGTGTCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (45 bp):
TGTAACAACTTAACCAGAACATATAACATATTTTTGTATATAGTA
Found at i:39933 original size:29 final size:29
Alignment explanation
Indices: 39892--39955 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
39882 TTTTGAATTT
*
39892 TTAA-AACTCACATCCAACCTAAAATCAA
1 TTAACAACTAACATCCAACCTAAAATCAA
* * *
39920 TTAACAACTAACATCTAACTTAAAATTAA
1 TTAACAACTAACATCCAACCTAAAATCAA
39949 TTAACAA
1 TTAACAA
39956 TACGTGAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.27
Consensus pattern (29 bp):
TTAACAACTAACATCCAACCTAAAATCAA
Found at i:47403 original size:15 final size:15
Alignment explanation
Indices: 47368--47405 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
47358 AAATCTCTAG
*
47368 AAAAATAATAAACTT
1 AAAAATAATAAACTA
47383 AAAAATAATAAA-TA
1 AAAAATAATAAACTA
47397 AATAAATAA
1 AA-AAATAA
47406 CACTTGGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATAATAAACTA
Found at i:50489 original size:2 final size:2
Alignment explanation
Indices: 50482--50519 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
50472 CATCATCATC
50482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50520 GTGAAAAGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51929 original size:17 final size:18
Alignment explanation
Indices: 51907--51940 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51897 TGTGAGGAGT
*
51907 AAATAT-TCAACCAATAA
1 AAATATCTCAAACAATAA
51924 AAATATCTCAAACAATA
1 AAATATCTCAAACAATA
51941 GATATAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.59, C:0.18, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATATCTCAAACAATAA
Found at i:53957 original size:16 final size:17
Alignment explanation
Indices: 53936--53968 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
53926 TTCACACAAG
53936 GTTAAAT-ATATAAATA
1 GTTAAATAATATAAATA
53952 GTTAAATAATATAAATA
1 GTTAAATAATATAAATA
53969 AAAATAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
GTTAAATAATATAAATA
Found at i:57326 original size:31 final size:32
Alignment explanation
Indices: 57271--57331 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
57261 AATGCCCTTG
* *
57271 CATCTTTGAAACCATGCAAGTTTTCCTATTTA
1 CATCTTTAAAACCATGAAAGTTTTCCTATTTA
57303 CATCTTTAAAACCAT-AAAGTTTTCCTATT
1 CATCTTTAAAACCATGAAAGTTTTCCTATT
57332 CAAATCTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (32 bp):
CATCTTTAAAACCATGAAAGTTTTCCTATTTA
Found at i:58060 original size:65 final size:64
Alignment explanation
Indices: 57862--58065 Score: 239
Period size: 65 Copynumber: 3.1 Consensus size: 64
57852 TAGCCATAGA
* * * * *
57862 ATAGTGATATTTCCTCCTCATTATCAAGGGAAATTGCATACTACCATGGGACTTCTCAACCATGA
1 ATAGTGATATTTCC-CCTCATTATTAAGGG-AATTGTATATTACTATGGGACTTCTCAACCATGG
57927 G
64 G
** * * **
57928 ATAGTGATATTTCACCCTCATTATTAAGGGAATCATATATTAATGTGGGACTTCTCAACCACAGG
1 ATAGTGATATTTC-CCCTCATTATTAAGGGAATTGTATATTACTATGGGACTTCTCAACCATGGG
* *
57993 ATAGGGATATTTCCCCTTCATTATTAAGGGAATTGTATATTACTATGGG-CTTTCTCAACAATGG
1 ATAGTGATATTTCCCC-TCATTATTAAGGGAATTGTATATTACTATGGGAC-TTCTCAACCATGG
58057 G
64 G
58058 ATAGTGAT
1 ATAGTGAT
58066 TTTTTGTCCT
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
64 4 0.03
65 83 0.72
66 27 0.23
67 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (64 bp):
ATAGTGATATTTCCCCTCATTATTAAGGGAATTGTATATTACTATGGGACTTCTCAACCATGGG
Found at i:66828 original size:19 final size:19
Alignment explanation
Indices: 66783--66830 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
66773 GAGTTGAGGA
* *
66783 CATCTTCCATGAGATCCTC
1 CATCTTCTATGAGATCCAC
66802 CATCTTCTATGAGATCCAC
1 CATCTTCTATGAGATCCAC
66821 CATCTTCTAT
1 CATCTTCTAT
66831 AATTCTTCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.35
Consensus pattern (19 bp):
CATCTTCTATGAGATCCAC
Found at i:67525 original size:33 final size:33
Alignment explanation
Indices: 67480--67550 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
67470 AACACTCTGG
*
67480 CCAACTTCAGTAGTGGCATTTACATTATCACCA
1 CCAACTTCAGTAGTGGCATTCACATTATCACCA
* *
67513 CCAAC-TCTAGTAGTGGCATTCACCTTATCACCC
1 CCAACTTC-AGTAGTGGCATTCACATTATCACCA
67546 CCAAC
1 CCAAC
67551 ATTTTGTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 2 0.06
33 32 0.94
ACGTcount: A:0.28, C:0.34, G:0.11, T:0.27
Consensus pattern (33 bp):
CCAACTTCAGTAGTGGCATTCACATTATCACCA
Found at i:70279 original size:3 final size:3
Alignment explanation
Indices: 70266--70300 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
70256 TAACAAATGA
70266 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
70301 TATTATTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:70305 original size:3 final size:3
Alignment explanation
Indices: 70299--70329 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
70289 AATAATAATA
70299 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
70330 AAACAAACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:91355 original size:43 final size:44
Alignment explanation
Indices: 91273--91360 Score: 169
Period size: 43 Copynumber: 2.0 Consensus size: 44
91263 AAAGAGTCCA
91273 AGCCTCAACTCTTAAAATGCAAAAGTTTAAACTCAGTAAAAAGG
1 AGCCTCAACTCTTAAAATGCAAAAGTTTAAACTCAGTAAAAAGG
91317 AGCCTCAACTCTTAAAATGC-AAAGTTTAAACTCAGTAAAAAGG
1 AGCCTCAACTCTTAAAATGCAAAAGTTTAAACTCAGTAAAAAGG
91360 A
1 A
91361 AGAAGATGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 24 0.55
44 20 0.45
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (44 bp):
AGCCTCAACTCTTAAAATGCAAAAGTTTAAACTCAGTAAAAAGG
Found at i:96987 original size:15 final size:15
Alignment explanation
Indices: 96969--97001 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
96959 TTGAAAAGAA
96969 TTAAAATAGAAAGTT
1 TTAAAATAGAAAGTT
*
96984 TTAAAATGGAAAGTT
1 TTAAAATAGAAAGTT
96999 TTA
1 TTA
97002 TTTCAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (15 bp):
TTAAAATAGAAAGTT
Found at i:98232 original size:14 final size:14
Alignment explanation
Indices: 98213--98254 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
98203 TGAAAACAAA
98213 AAAAAATAAAAAG-T
1 AAAAAA-AAAAAGAT
98227 AAAAAAAAAAAGAT
1 AAAAAAAAAAAGAT
*
98241 AAAAGAAGAAAAGA
1 AAAA-AAAAAAAGA
98255 GATGAAAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 6 0.24
14 11 0.44
15 8 0.32
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (14 bp):
AAAAAAAAAAAGAT
Found at i:98252 original size:21 final size:19
Alignment explanation
Indices: 98210--98252 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
98200 TTTTGAAAAC
* *
98210 AAAAAAAAATAAAAAGTAA
1 AAAAAAAAAGAAAAAGAAA
*
98229 AAAAAAAAAGATAAAAGAAG
1 AAAAAAAAAGA-AAAAGAAA
98249 AAAA
1 AAAA
98253 GAGATGAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.84, C:0.00, G:0.09, T:0.07
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAGAAA
Found at i:100668 original size:108 final size:108
Alignment explanation
Indices: 100547--100750 Score: 311
Period size: 108 Copynumber: 1.9 Consensus size: 108
100537 TATAAGAAAT
* * *
100547 TTTGAGTAAATTTAAATAAAAGGTAAATTAGATAAGAGTTGAATAATTTTC-AAAGAATGTGTAT
1 TTTGAGTAAATTTAAATAAAACGTAAATTAGACAAGAGTTGAATAA-TTTCAAAAGAATATGTAT
* *
100611 TTATAAATTGTGAAAATTGTAACTAAATCAACATATTTTGCTAA
65 TTATAAATTGTAAAAATTATAACTAAATCAACATATTTTGCTAA
* *
100655 TTTGATTAAATTTAAATAAAACGTAAATTGGACAAGAGTTGAATAATTTCAAAAGAATATGTATT
1 TTTGAGTAAATTTAAATAAAACGTAAATTAGACAAGAGTTGAATAATTTCAAAAGAATATGTATT
* *
100720 TGTAAATTGTAAAAATTATAATTAAATCAAC
66 TATAAATTGTAAAAATTATAACTAAATCAAC
100751 GCATTTAGTC
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 4 0.05
108 82 0.95
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (108 bp):
TTTGAGTAAATTTAAATAAAACGTAAATTAGACAAGAGTTGAATAATTTCAAAAGAATATGTATT
TATAAATTGTAAAAATTATAACTAAATCAACATATTTTGCTAA
Found at i:103019 original size:34 final size:34
Alignment explanation
Indices: 102974--103039 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
102964 TAAATCAGAC
102974 TTTAATAAATAAGAATCATAAAG-ACTCATACACA
1 TTTAATAAATAAGAATCAT-AAGCACTCATACACA
* *
103008 TTTAATGAATAAGAATCATGAGCACTCATACA
1 TTTAATAAATAAGAATCATAAGCACTCATACA
103040 TTTGAGTCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 2 0.07
34 27 0.93
ACGTcount: A:0.48, C:0.15, G:0.09, T:0.27
Consensus pattern (34 bp):
TTTAATAAATAAGAATCATAAGCACTCATACACA
Found at i:103655 original size:8 final size:8
Alignment explanation
Indices: 103642--103667 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
103632 TTCGGGTAAA
103642 CGGATAAT
1 CGGATAAT
103650 CGGATAAT
1 CGGATAAT
103658 CGGATAAT
1 CGGATAAT
103666 CG
1 CG
103668 CCCAATCGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (8 bp):
CGGATAAT
Found at i:108862 original size:6 final size:6
Alignment explanation
Indices: 108851--108880 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
108841 AGGACTAGCT
108851 ATCTAA ATCTAA ATCTAA ATCTAA ATCTAA
1 ATCTAA ATCTAA ATCTAA ATCTAA ATCTAA
108881 TGATCGAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
ATCTAA
Found at i:108983 original size:8 final size:8
Alignment explanation
Indices: 108970--108999 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
108960 TGTGATAATA
108970 AAAAATTT
1 AAAAATTT
108978 AAAAATTT
1 AAAAATTT
108986 AAAAATTT
1 AAAAATTT
108994 AAAAAT
1 AAAAAT
109000 AATTTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAAATTT
Found at i:109870 original size:17 final size:15
Alignment explanation
Indices: 109848--109967 Score: 50
Period size: 15 Copynumber: 7.5 Consensus size: 15
109838 AGTCTAATAC
109848 TATTTTAGCCTTATTAT
1 TATTTTAG--TTATTAT
109865 TATTTT-GTTATTAT
1 TATTTTAGTTATTAT
* *
109879 TATATTTACTAGTCTTAT
1 TAT-TTTAGT--TATTAT
* *
109897 TATGTTAAATT-TTAT
1 TAT-TTTAGTTATTAT
109912 TATATTTGATGTTATTAT
1 TAT-TTT-A-GTTATTAT
* *
109930 TATTTT-TTTATAAT
1 TATTTTAGTTATTAT
*
109944 TATTTTTA-TAATTAT
1 TA-TTTTAGTTATTAT
109959 TGATTTTAG
1 T-ATTTTAG
109968 ATTTGAATAA
Statistics
Matches: 80, Mismatches: 12, Indels: 23
0.70 0.10 0.20
Matches are distributed among these distances:
14 18 0.22
15 27 0.34
16 5 0.06
17 11 0.14
18 19 0.24
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (15 bp):
TATTTTAGTTATTAT
Found at i:109945 original size:14 final size:14
Alignment explanation
Indices: 109923--109959 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 14
109913 ATATTTGATG
*
109923 TTATTATTATTTTT
1 TTATAATTATTTTT
109937 TTATAATTA--TTT
1 TTATAATTATTTTT
109949 TTATAATTATT
1 TTATAATTATT
109960 GATTTTAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
12 12 0.60
14 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATAATTATTTTT
Found at i:109951 original size:12 final size:12
Alignment explanation
Indices: 109934--109959 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
109924 TATTATTATT
109934 TTTTTATAATTA
1 TTTTTATAATTA
109946 TTTTTATAATTA
1 TTTTTATAATTA
109958 TT
1 TT
109960 GATTTTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTTATAATTA
Found at i:113167 original size:48 final size:48
Alignment explanation
Indices: 113108--113214 Score: 178
Period size: 48 Copynumber: 2.2 Consensus size: 48
113098 TTTATTTGGT
*
113108 ATTATGTGACTGAATATTTGTTGAGCACTGCATGACTTATTTGTAGGC
1 ATTACGTGACTGAATATTTGTTGAGCACTGCATGACTTATTTGTAGGC
* * *
113156 ATTACGTGACTGAATATTTGTTGAGCATTGCGTGACTTGTTTGTAGGC
1 ATTACGTGACTGAATATTTGTTGAGCACTGCATGACTTATTTGTAGGC
113204 ATTACGTGACT
1 ATTACGTGACT
113215 TATTTGTAAG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.39
Consensus pattern (48 bp):
ATTACGTGACTGAATATTTGTTGAGCACTGCATGACTTATTTGTAGGC
Found at i:113189 original size:26 final size:26
Alignment explanation
Indices: 113113--113192 Score: 96
Period size: 26 Copynumber: 3.2 Consensus size: 26
113103 TTGGTATTAT
*
113113 GTGACTGAATATTTGTTGAGCACTGC
1 GTGACTGAATATTTGTTGAGCATTGC
* * *
113139 ATGACT---TATTTGTAG-GCATTAC
1 GTGACTGAATATTTGTTGAGCATTGC
113161 GTGACTGAATATTTGTTGAGCATTGC
1 GTGACTGAATATTTGTTGAGCATTGC
113187 GTGACT
1 GTGACT
113193 TGTTTGTAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
22 10 0.23
23 8 0.19
25 8 0.19
26 17 0.40
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.38
Consensus pattern (26 bp):
GTGACTGAATATTTGTTGAGCATTGC
Found at i:113206 original size:22 final size:22
Alignment explanation
Indices: 113140--113237 Score: 124
Period size: 22 Copynumber: 4.3 Consensus size: 22
113130 GAGCACTGCA
113140 TGACTTATTTGTAGGCATTACG
1 TGACTTATTTGTAGGCATTACG
* *
113162 TGACTGAATATTTGTTGAGCATTGCG
1 TGACT---TATTTGTAG-GCATTACG
*
113188 TGACTTGTTTGTAGGCATTACG
1 TGACTTATTTGTAGGCATTACG
*
113210 TGACTTATTTGTAAGCATTACG
1 TGACTTATTTGTAGGCATTACG
113232 TGACTT
1 TGACTT
113238 TATCTATCTA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
22 38 0.58
23 7 0.11
25 8 0.12
26 12 0.18
ACGTcount: A:0.22, C:0.13, G:0.23, T:0.41
Consensus pattern (22 bp):
TGACTTATTTGTAGGCATTACG
Found at i:114340 original size:203 final size:203
Alignment explanation
Indices: 113978--114345 Score: 540
Period size: 203 Copynumber: 1.8 Consensus size: 203
113968 ATGTATATGA
* * * *
113978 TGACTTGTTGTTATGTATTGCGTGGCATTGGGCTAGTACATGATTGGTTATGTTGGTACAACATG
1 TGACCTGTTGTTATGTATTGCGTGACATTGGGCTAGTACATGATTGGTTATGTTAGCACAACATG
* *
114043 AGTGGATACTAGGCATCAAGTGACTTATTATTAGGTATTGTGAGACTAGAGGTGCATGACTTATG
66 AGTGGATACTACGCATCAAGTGACTTATTATTAGGTATTGTGAGACTAGACGTGCATGACTTATG
*
114108 CAATTCATCTCTTGTTTTGATGCTTTTGTTCACTAATTTATAGGTATTGCATGATTGATTTTTAT
131 CAATTCATCTCTTGTTTTGAGGCTTTTGTTCACTAATTTATAGGTATTGCATGATTGATTTTTAT
114173 ATATTACG
196 ATATTACG
* * * **
114181 TGACCTGTTGTTATGTATTGCGTGACATTGGGCTATTACGTGATTGGTTATGTTAGCATAATGTG
1 TGACCTGTTGTTATGTATTGCGTGACATTGGGCTAGTACATGATTGGTTATGTTAGCACAACATG
* ** * ** *
114246 AGTGGATATTACGCATTGAGTGACTTATTATTAGGTATTGTGAGA-TTGAACGTGTGTGACTTGT
66 AGTGGATACTACGCATCAAGTGACTTATTATTAGGTATTGTGAGACTAG-ACGTGCATGACTTAT
*
114310 GCAATTCATCTCTTGTTTTGAGGTTTTTGTTCACTA
130 GCAATTCATCTCTTGTTTTGAGGCTTTTGTTCACTA
114346 GTTTTTAGAC
Statistics
Matches: 144, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
202 2 0.01
203 142 0.99
ACGTcount: A:0.23, C:0.11, G:0.24, T:0.42
Consensus pattern (203 bp):
TGACCTGTTGTTATGTATTGCGTGACATTGGGCTAGTACATGATTGGTTATGTTAGCACAACATG
AGTGGATACTACGCATCAAGTGACTTATTATTAGGTATTGTGAGACTAGACGTGCATGACTTATG
CAATTCATCTCTTGTTTTGAGGCTTTTGTTCACTAATTTATAGGTATTGCATGATTGATTTTTAT
ATATTACG
Found at i:118039 original size:19 final size:19
Alignment explanation
Indices: 118014--118064 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
118004 GGGGGTAAGA
*
118014 ATAAATATTTATGAATTTTT
1 ATAAATATTTAAG-ATTTTT
118034 -TAAATATTTCAAGATTTTT
1 ATAAATATTT-AAGATTTTT
118053 ATAAATATTTAA
1 ATAAATATTTAA
118065 AAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (19 bp):
ATAAATATTTAAGATTTTT
Found at i:118057 original size:20 final size:20
Alignment explanation
Indices: 118014--118074 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
118004 GGGGGTAAGA
*
118014 ATAAATATTTATGAATTTTT
1 ATAAATATTTAAGAATTTTT
118034 -TAAATATTTCAAG-ATTTTT
1 ATAAATATTT-AAGAATTTTT
* *
118053 ATAAATATTTAAAAAATTTT
1 ATAAATATTTAAGAATTTTT
118073 AT
1 AT
118075 GTTTTTCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
19 17 0.49
20 18 0.51
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (20 bp):
ATAAATATTTAAGAATTTTT
Found at i:119730 original size:23 final size:23
Alignment explanation
Indices: 119700--119744 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
119690 CACAATAAGT
119700 AAGTCACGCAATCCCATATCAAA
1 AAGTCACGCAATCCCATATCAAA
* *
119723 AAGTCACGCGATTCCATATCAA
1 AAGTCACGCAATCCCATATCAA
119745 CTAGTGACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.20
Consensus pattern (23 bp):
AAGTCACGCAATCCCATATCAAA
Found at i:119757 original size:23 final size:23
Alignment explanation
Indices: 119713--119772 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
119703 TCACGCAATC
** *
119713 CCATATCAAAAAGTCACGCGATT
1 CCATATCAACTAGTCACACGATT
*
119736 CCATATCAACTAGTGACACGATT
1 CCATATCAACTAGTCACACGATT
119759 CCATCAT-AACTAGT
1 CCAT-ATCAACTAGT
119773 AACGCCACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 30 0.94
24 2 0.06
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.25
Consensus pattern (23 bp):
CCATATCAACTAGTCACACGATT
Found at i:119938 original size:23 final size:23
Alignment explanation
Indices: 119912--119976 Score: 58
Period size: 23 Copynumber: 2.8 Consensus size: 23
119902 ACACCACTCC
*
119912 ATATTTACTACTCATGCGAGTCA
1 ATATTTACTACTCATGCGAATCA
** *** *
119935 ATATCAACTACTCAAATGAATCC
1 ATATTTACTACTCATGCGAATCA
*
119958 ATATTTGCTACTCATGCGA
1 ATATTTACTACTCATGCGA
119977 TTTTATAATA
Statistics
Matches: 29, Mismatches: 13, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (23 bp):
ATATTTACTACTCATGCGAATCA
Found at i:120124 original size:23 final size:23
Alignment explanation
Indices: 120098--120146 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
120088 AAGCCATTTT
* *
120098 ATAATAACTAGTCATGCAATTCC
1 ATAATAACTAGTAATGCAACTCC
*
120121 ATAATAACTAGTAATGCCACTCC
1 ATAATAACTAGTAATGCAACTCC
120144 ATA
1 ATA
120147 TTTACAATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (23 bp):
ATAATAACTAGTAATGCAACTCC
Found at i:120209 original size:23 final size:23
Alignment explanation
Indices: 120167--120211 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
120157 GCGTGACACA
* **
120167 ATATTAACTAGTCATGTGATTCC
1 ATATTAACTAGCCACATGATTCC
120190 ATATTAACTAGCCACATGATTC
1 ATATTAACTAGCCACATGATTC
120212 TAAATTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (23 bp):
ATATTAACTAGCCACATGATTCC
Found at i:120565 original size:26 final size:28
Alignment explanation
Indices: 120525--120582 Score: 93
Period size: 26 Copynumber: 2.1 Consensus size: 28
120515 TGCCCTTCTC
120525 TTGGTTAAATGATACAAAAAAGAA-AAA
1 TTGGTTAAATGATACAAAAAAGAATAAA
*
120552 TTGGTT-AATGATACAACAAAGAATAAA
1 TTGGTTAAATGATACAAAAAAGAATAAA
120579 TTGG
1 TTGG
120583 AGATAATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 16 0.55
27 13 0.45
ACGTcount: A:0.52, C:0.05, G:0.17, T:0.26
Consensus pattern (28 bp):
TTGGTTAAATGATACAAAAAAGAATAAA
Found at i:120591 original size:26 final size:25
Alignment explanation
Indices: 120536--120592 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
120526 TGGTTAAATG
*
120536 ATACAAAAAAGAAAAATTGGTTAATG
1 ATACAAAAAAGAAAAATTGG-TAATA
*
120562 ATACAACAAAGAATAAATTGG-AGATA
1 ATACAAAAAAGAA-AAATTGGTA-ATA
120588 ATACA
1 ATACA
120593 GAACAATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 19 0.70
27 7 0.26
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (25 bp):
ATACAAAAAAGAAAAATTGGTAATA
Found at i:122970 original size:17 final size:18
Alignment explanation
Indices: 122950--122984 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
122940 TGCTACCCTA
122950 TAAC-AATAAAAAAAATT
1 TAACAAATAAAAAAAATT
122967 TAACAAAATAAAAAAAAT
1 TAAC-AAATAAAAAAAAT
122985 ATGGTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
19 12 0.75
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (18 bp):
TAACAAATAAAAAAAATT
Found at i:130322 original size:36 final size:38
Alignment explanation
Indices: 130273--130344 Score: 87
Period size: 36 Copynumber: 1.9 Consensus size: 38
130263 AGTAAACATT
**
130273 ATATAATTTAAAA-TAAA-AATATAAA-AATTGAATTGA
1 ATATAATAAAAAATTAAATAAT-TAAATAATTGAATTGA
*
130309 ATATAATAAAAAATTAAATAATTAAATAATTTAATT
1 ATATAATAAAAAATTAAATAATTAAATAATTGAATT
130345 TTTTTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 11 0.37
37 8 0.27
38 11 0.37
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (38 bp):
ATATAATAAAAAATTAAATAATTAAATAATTGAATTGA
Found at i:142048 original size:27 final size:27
Alignment explanation
Indices: 142011--142062 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
142001 AATTTATTTT
*
142011 TTTCAATATGATGGGTAACAATTTTAG
1 TTTCAACATGATGGGTAACAATTTTAG
* *
142038 TTTCAACATGATGTGTAATAATTTT
1 TTTCAACATGATGGGTAACAATTTT
142063 TCTTTAACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (27 bp):
TTTCAACATGATGGGTAACAATTTTAG
Found at i:150462 original size:77 final size:77
Alignment explanation
Indices: 150367--150516 Score: 210
Period size: 77 Copynumber: 1.9 Consensus size: 77
150357 TTTCAAAATC
* * ** *
150367 TATAATTATAAATATGTATTTATTAAATGATGATAATTGAAATATTTTTCATTATAACTATTAGC
1 TATAATTATAAATATGTATTCATCAAATGACCATAATTGAAATATTTTTCATTATAACTATTAGA
150432 AAGATTTAAACT
66 AAGATTTAAACT
* * * * *
150444 TATACTTATAAATGTGTATTCATCAAATGACCATCATTGAAATATTTTTTATTATAATTATTAGA
1 TATAATTATAAATATGTATTCATCAAATGACCATAATTGAAATATTTTTCATTATAACTATTAGA
150509 AAGATTTA
66 AAGATTTA
150517 TTCAATTTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (77 bp):
TATAATTATAAATATGTATTCATCAAATGACCATAATTGAAATATTTTTCATTATAACTATTAGA
AAGATTTAAACT
Found at i:156222 original size:18 final size:19
Alignment explanation
Indices: 156191--156232 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
156181 CACTTTTGAA
156191 ATAAAATTAAATT-ATAAT
1 ATAAAATTAAATTAATAAT
**
156209 ATAAAATTTCATTAATAAT
1 ATAAAATTAAATTAATAAT
*
156228 TTAAA
1 ATAAA
156233 TATAAATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATAAAATTAAATTAATAAT
Found at i:156505 original size:153 final size:154
Alignment explanation
Indices: 156214--156517 Score: 350
Period size: 153 Copynumber: 2.0 Consensus size: 154
156204 ATAATATAAA
* ** * *
156214 ATTTCATTAATAATTTAAATATAAATTTTTTGATTTACTAATATAAGGAGATATAAAACAAGAAG
1 ATTTCATTAACAATTTAAATATAAAGCTTTTGATTTACTAATATAAAGAGATATAAAAC-AGAAA
* * * **
156279 AAAAATTAACATTAAATTTTTATATTAGATATCGTAATAGATGTAAAGCCGGAAGAAAATTAACA
65 AAAAATTAACATTAAATTTTCACATTAGATATCGTAATAGATATAAAGCCAAAAGAAAATTAACA
* * *
156344 TTAGATTTTCATATTAGGTTAACAT
130 TTAAATTTTCACATTAAGTTAACAT
*
156369 ATTTCATTAACAATTTAAATAT-AAGCTTTTGAATTTA-TCAATATAAATAGATAT-AAAC-GTA
1 ATTTCATTAACAATTTAAATATAAAGCTTTTG-ATTTACT-AATATAAAGAGATATAAAACAG-A
* * **
156430 AAAAAAATTAATATTAGATTTTCACATTATG-TATCGTAATATTTATAAAG-CAAAAGAAAAATT
63 AAAAAAATTAACATTAAATTTTCACATTA-GATATCGTAATAGATATAAAGCCAAAAG-AAAATT
156493 AACATTAAATTTTCACATTAAGTTA
126 AACATTAAATTTTCACATTAAGTTA
156518 CATCAAGACT
Statistics
Matches: 126, Mismatches: 18, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
152 5 0.04
153 69 0.55
154 13 0.10
155 39 0.31
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (154 bp):
ATTTCATTAACAATTTAAATATAAAGCTTTTGATTTACTAATATAAAGAGATATAAAACAGAAAA
AAAATTAACATTAAATTTTCACATTAGATATCGTAATAGATATAAAGCCAAAAGAAAATTAACAT
TAAATTTTCACATTAAGTTAACAT
Found at i:168361 original size:15 final size:15
Alignment explanation
Indices: 168341--168382 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
168331 TAATTATTAT
168341 TATATATATTTAAAA
1 TATATATATTTAAAA
* *
168356 TATATATTTTTAATA
1 TATATATATTTAAAA
*
168371 TAAATATATTTA
1 TATATATATTTA
168383 CTTTTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATATATATTTAAAA
Found at i:169742 original size:2 final size:2
Alignment explanation
Indices: 169735--169761 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
169725 GAATGATACA
169735 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
169762 AGACTAATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:187560 original size:89 final size:88
Alignment explanation
Indices: 187382--187593 Score: 311
Period size: 89 Copynumber: 2.4 Consensus size: 88
187372 GAAAATCCTT
* * * * * *
187382 ATAAGGGTAGGAGAATTATTTAAATATTT-AAAATTATTAATACTTGAATCCGAATAAATAAGGA
1 ATAAGAGTAGGAGAGTTATTTAGATATTTAAAAATTATTAATACTTGAATCCAAATAAAGAAAGA
*
187446 ATTGGTCTAAATTCTAAATTTTA
66 ATTAGTCTAAATTCTAAATTTTA
* *
187469 ATAAGAGTAGGAGAGTTATTTAGATATTTAAAAATTATTAGTACTTGAATTCAAATAAAGACAAG
1 ATAAGAGTAGGAGAGTTATTTAGATATTTAAAAATTATTAATACTTGAATCCAAATAAAGA-AAG
187534 AATTAGTCTAAATTCTAAATTTTA
65 AATTAGTCTAAATTCTAAATTTTA
187558 ATAA-AGATAGGAGAGTTATTTAGATATTTAAAAATT
1 ATAAGAG-TAGGAGAGTTATTTAGATATTTAAAAATT
187594 GTCAACACTC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
87 26 0.23
88 29 0.26
89 58 0.51
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (88 bp):
ATAAGAGTAGGAGAGTTATTTAGATATTTAAAAATTATTAATACTTGAATCCAAATAAAGAAAGA
ATTAGTCTAAATTCTAAATTTTA
Found at i:187705 original size:114 final size:116
Alignment explanation
Indices: 187551--187760 Score: 352
Period size: 114 Copynumber: 1.8 Consensus size: 116
187541 CTAAATTCTA
*
187551 AATTTTAATAAAGATAGGAGAGTTATTTAGATATTTAAAAATTGTCAACACTCAAATCCTTATTT
1 AATTTTAATAAAGATAGGAGAGTTATTTAGATATTTAAAAATTATCAACACTCAAATCCTTATTT
187616 GGATACTTAAAAATCATTAGTACTCAAATCCCAATAAAGACATGAATTTCC
66 GGATACTTAAAAATCATTAGTACTCAAATCCCAATAAAGACATGAATTTCC
* *
187667 AATTTTAATAAAGATA-G-GAGTTATTTAGATATTTAAAAATTATCAATACTCAAATTCTTATTT
1 AATTTTAATAAAGATAGGAGAGTTATTTAGATATTTAAAAATTATCAACACTCAAATCCTTATTT
* * *
187730 GGATACTTAAAAATTATTAGTTCTCGAATCC
66 GGATACTTAAAAATCATTAGTACTCAAATCC
187761 AAATGAAAAG
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
114 71 0.81
115 1 0.01
116 16 0.18
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (116 bp):
AATTTTAATAAAGATAGGAGAGTTATTTAGATATTTAAAAATTATCAACACTCAAATCCTTATTT
GGATACTTAAAAATCATTAGTACTCAAATCCCAATAAAGACATGAATTTCC
Found at i:192950 original size:171 final size:172
Alignment explanation
Indices: 192648--192990 Score: 661
Period size: 171 Copynumber: 2.0 Consensus size: 172
192638 TCCTAATTGG
192648 ATTTTTGCTTTAAAGACTTGTCATGGACTAATTAATTCTTAGTTCAACATGTGATGTAAGTACCA
1 ATTTTTGCTTTAAAGACTTGTCATGGACTAATTAATTCTTAGTTCAACATGTGATGTAAGTACCA
192713 TTCGTCCTGGTTGAATCTTAAGGCCCTTCTCCAGAGAGGAAAGGAAGAGCTCAATACCTAATTGA
66 TTCGTCCTGGTTGAATCTTAAGGCCCTTCTCCAGAGAGGAAAGGAAGAGCTCAATACCTAATTGA
192778 TCGCATTAGAAGAATCACTTTTTACTATTAAACAATATAAAC
131 TCGCATTAGAAGAATCACTTTTTACTATTAAACAATATAAAC
*
192820 ATTTTTGGTTTAAAGACTTGTCATGGACTAATTAATTCTTAGTTCAACATGTGATGTAAGTACCA
1 ATTTTTGCTTTAAAGACTTGTCATGGACTAATTAATTCTTAGTTCAACATGTGATGTAAGTACCA
*
192885 -TCGTCCTGGTTGAATCTTAAGGCCCTTCTCCATAGAGGAAAGGAAGAGCTCAATACCTAATTGA
66 TTCGTCCTGGTTGAATCTTAAGGCCCTTCTCCAGAGAGGAAAGGAAGAGCTCAATACCTAATTGA
192949 TCGCATTAGAAGAATCACTTTTTACTATTAAACAATATAAAC
131 TCGCATTAGAAGAATCACTTTTTACTATTAAACAATATAAAC
192991 GGATCCATTT
Statistics
Matches: 169, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
171 105 0.62
172 64 0.38
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (172 bp):
ATTTTTGCTTTAAAGACTTGTCATGGACTAATTAATTCTTAGTTCAACATGTGATGTAAGTACCA
TTCGTCCTGGTTGAATCTTAAGGCCCTTCTCCAGAGAGGAAAGGAAGAGCTCAATACCTAATTGA
TCGCATTAGAAGAATCACTTTTTACTATTAAACAATATAAAC
Found at i:195308 original size:26 final size:27
Alignment explanation
Indices: 195259--195315 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
195249 ATCATTCTCT
195259 CTGTCCCAACCCTCCACTTCCTCTCCC
1 CTGTCCCAACCCTCCACTTCCTCTCCC
* * *
195286 CTGTCCCGACCTTCC-CTTGCTCTCCC
1 CTGTCCCAACCCTCCACTTCCTCTCCC
195312 CTGT
1 CTGT
195316 GAGGCTGTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.07, C:0.54, G:0.09, T:0.30
Consensus pattern (27 bp):
CTGTCCCAACCCTCCACTTCCTCTCCC
Found at i:195944 original size:33 final size:32
Alignment explanation
Indices: 195907--195987 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 32
195897 AATTTTAAAT
* *
195907 CAGAAAATATTTTCAGTAATGTCT-TTCAAACAA
1 CAGAAAATATTTTCA-CAATGT-TATACAAACAA
195940 CAGAAAATATTTTCTACAATGTTATACAAACAA
1 CAGAAAATATTTTC-ACAATGTTATACAAACAA
* *
195973 GAGAAAATACTTTCA
1 CAGAAAATATTTTCA
195988 TGGAAAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
32 2 0.05
33 39 0.93
34 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (32 bp):
CAGAAAATATTTTCACAATGTTATACAAACAA
Found at i:200433 original size:63 final size:64
Alignment explanation
Indices: 200358--200484 Score: 193
Period size: 63 Copynumber: 2.0 Consensus size: 64
200348 AAATTCAACG
* * * *
200358 CAGCATTGGCTGCCTCATCACTTCCCAAGATTGTTGCTTGCTGTTCTCTCTGGAA-TTTTCCAC
1 CAGCATTGGCTGCCTCATCACTTCCCAAGATTGTTGCCTGCAGTTCCCTCTGCAATTTTTCCAC
* *
200421 CAGCATTGGCTGCCTCGTCACTTCCCAAGATTGTTGCCTGCAGTTCCCTTTGCAATTTTTCCAC
1 CAGCATTGGCTGCCTCATCACTTCCCAAGATTGTTGCCTGCAGTTCCCTCTGCAATTTTTCCAC
200485 TTTTCGTTCA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
63 49 0.86
64 8 0.14
ACGTcount: A:0.16, C:0.31, G:0.17, T:0.35
Consensus pattern (64 bp):
CAGCATTGGCTGCCTCATCACTTCCCAAGATTGTTGCCTGCAGTTCCCTCTGCAATTTTTCCAC
Found at i:208146 original size:2 final size:2
Alignment explanation
Indices: 208139--208174 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
208129 CATTTCCCAC
208139 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
208175 TCATGTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:210543 original size:2 final size:2
Alignment explanation
Indices: 210538--210568 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
210528 TTGTTTTTTG
210538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
210569 AGCATGTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:219255 original size:15 final size:14
Alignment explanation
Indices: 219235--219278 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
219225 TATTGTATAA
219235 TTTAAATATTAATAT
1 TTTAAA-ATTAATAT
219250 TTT-AAATTAATTAT
1 TTTAAAATTAA-TAT
*
219264 TTTAAAATAAATAT
1 TTTAAAATTAATAT
219278 T
1 T
219279 AATAATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 5 0.19
14 12 0.46
15 9 0.35
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAATTAATAT
Found at i:219264 original size:20 final size:22
Alignment explanation
Indices: 219222--219264 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 22
219212 TAATTTTTAA
*
219222 TAATATTGTATAATTTAAATAT
1 TAATATTGTATAAATTAAATAT
*
219244 TAATATT-T-TAAATTAATTAT
1 TAATATTGTATAAATTAAATAT
219264 T
1 T
219265 TTAAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.58
21 1 0.05
22 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TAATATTGTATAAATTAAATAT
Found at i:219275 original size:34 final size:29
Alignment explanation
Indices: 219237--219314 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 29
219227 TTGTATAATT
219237 TAAATATTAATATTTTAAATTAATTATTTTAAAA
1 TAAATATTAATATTTT---TT-A-TATTTTAAAA
*
219271 TAAATATTAATAATTTTTTATATTTTAAAT
1 TAAATATTAAT-ATTTTTTATATTTTAAAA
219301 TAAATATTAATATT
1 TAAATATTAATATT
219315 CATCAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 3 0.07
30 20 0.48
31 1 0.02
32 2 0.05
34 11 0.26
35 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
TAAATATTAATATTTTTTATATTTTAAAA
Found at i:221241 original size:24 final size:24
Alignment explanation
Indices: 221209--221257 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
221199 TTAATAATAT
221209 AAATGAACAGTCTGATTCATCAAC
1 AAATGAACAGTCTGATTCATCAAC
*
221233 AAATGAACAGTTTGATTCATCAAC
1 AAATGAACAGTCTGATTCATCAAC
221257 A
1 A
221258 GAAAGTACCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (24 bp):
AAATGAACAGTCTGATTCATCAAC
Found at i:222765 original size:11 final size:11
Alignment explanation
Indices: 222748--222777 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
222738 AAATTGCACC
222748 ATCCAACAAAT
1 ATCCAACAAAT
*
222759 CTCCAACAAAT
1 ATCCAACAAAT
222770 ATCCAACA
1 ATCCAACA
222778 CAGTAAATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (11 bp):
ATCCAACAAAT
Found at i:224104 original size:30 final size:30
Alignment explanation
Indices: 224063--224137 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
224053 NNNNNNNNNN
224063 TAAGAGTTTATTTGATTAAAAATAAAAA-G
1 TAAGAGTTTATTTGATTAAAAATAAAAATG
* * *
224092 TTAAGAGATTATTGGATTCAAAATAAAAATG
1 -TAAGAGTTTATTTGATTAAAAATAAAAATG
*
224123 TAAGAGTTTAATTGA
1 TAAGAGTTTATTTGA
224138 GAGTAATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 37 0.97
31 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.16, T:0.35
Consensus pattern (30 bp):
TAAGAGTTTATTTGATTAAAAATAAAAATG
Found at i:224357 original size:16 final size:18
Alignment explanation
Indices: 224316--224350 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
224306 TGTAATCTCG
224316 ATATATAC--ATATCGAT
1 ATATATACATATATCGAT
224332 ATATATACATATATCGAT
1 ATATATACATATATCGAT
224350 A
1 A
224351 AATACATTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37
Consensus pattern (18 bp):
ATATATACATATATCGAT
Found at i:228846 original size:12 final size:12
Alignment explanation
Indices: 228829--228862 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
228819 TTACATCAAT
228829 ATGGTTCTGCAA
1 ATGGTTCTGCAA
228841 ATGGTTCTGCAA
1 ATGGTTCTGCAA
228853 ATGGTTCTGC
1 ATGGTTCTGC
228863 CAATTGATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (12 bp):
ATGGTTCTGCAA
Found at i:233687 original size:11 final size:11
Alignment explanation
Indices: 233651--233687 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
233641 CTCCTACAAA
233651 AACATAAAAGT
1 AACATAAAAGT
233662 AA-ATATAAA-T
1 AACATA-AAAGT
233672 AACATAAAAGT
1 AACATAAAAGT
233683 AACAT
1 AACAT
233688 TATTAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.65, C:0.08, G:0.05, T:0.22
Consensus pattern (11 bp):
AACATAAAAGT
Found at i:234399 original size:24 final size:24
Alignment explanation
Indices: 234354--234404 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
234344 TTTATGAAAA
* *
234354 TTTAATATTTTTGTTATTTTTTAT
1 TTTAATATTTTTGTAATATTTTAT
*
234378 TTTAATATTTTT-TAACTATTTTGT
1 TTTAATATTTTTGTAA-TATTTTAT
234402 TTT
1 TTT
234405 TATTAATTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.73
Consensus pattern (24 bp):
TTTAATATTTTTGTAATATTTTAT
Found at i:244919 original size:20 final size:19
Alignment explanation
Indices: 244894--244963 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
244884 TTATTTTTTA
244894 TTAAATTAAATTAACTCATT
1 TTAAATTAAATTAA-TCATT
*
244914 TTAAATTAAA-TAATCTTT
1 TTAAATTAAATTAATCATT
*
244932 TTATAATTAATAATTAATTATT
1 TTA-AATT-A-AATTAATCATT
*
244954 TTTAATTAAA
1 TTAAATTAAA
244964 ATGTAACTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
18 7 0.17
19 9 0.21
20 12 0.29
21 6 0.14
22 8 0.19
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAAATTAAATTAATCATT
Found at i:244941 original size:19 final size:18
Alignment explanation
Indices: 244894--244945 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
244884 TTATTTTTTA
244894 TTAAATTAAATTAACTCATT
1 TTAAATTAAA-TAA-TCATT
*
244914 TTAAATTAAATAATCTTT
1 TTAAATTAAATAATCATT
244932 TTATAATT-AATAAT
1 TTA-AATTAAATAAT
244946 TAATTATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 13 0.43
19 7 0.23
20 10 0.33
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (18 bp):
TTAAATTAAATAATCATT
Found at i:266340 original size:4 final size:4
Alignment explanation
Indices: 266333--266367 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
266323 GTGTGTGTGT
266333 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
266368 TATAGTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:282309 original size:29 final size:30
Alignment explanation
Indices: 282277--282339 Score: 94
Period size: 29 Copynumber: 2.1 Consensus size: 30
282267 TAACCAACTT
*
282277 TTATATTTTTAT-TTTAATCTAAATAAA-TC
1 TTATATTTTTATGTTAAATC-AAATAAATTC
282306 TTATATTTTTATGTTAAATCAAATAAATTC
1 TTATATTTTTATGTTAAATCAAATAAATTC
282336 TTAT
1 TTAT
282340 CACAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (30 bp):
TTATATTTTTATGTTAAATCAAATAAATTC
Found at i:285334 original size:11 final size:11
Alignment explanation
Indices: 285318--285342 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
285308 GATACAAGAG
285318 TATATTATTAT
1 TATATTATTAT
285329 TATATTATTAT
1 TATATTATTAT
285340 TAT
1 TAT
285343 TTAGGAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATATTATTAT
Found at i:290888 original size:14 final size:15
Alignment explanation
Indices: 290869--290899 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
290859 TAATGTTATA
290869 ATTAAAATAAAA-AT
1 ATTAAAATAAAATAT
290883 ATTAAAATAAAATAT
1 ATTAAAATAAAATAT
290898 AT
1 AT
290900 AATATAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATTAAAATAAAATAT
Found at i:291003 original size:29 final size:29
Alignment explanation
Indices: 290958--291022 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
290948 ATAATATAGG
* *
290958 TAAAAGAAATTAAAATAAAATATATAATAT
1 TAAAA-AAATAAAAATAAAATATATAACAT
*
290988 TAAAAAAATAAAAATAAAATATATGACAT
1 TAAAAAAATAAAAATAAAATATATAACAT
291017 TAAAAA
1 TAAAAA
291023 TATATTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (29 bp):
TAAAAAAATAAAAATAAAATATATAACAT
Found at i:291393 original size:23 final size:22
Alignment explanation
Indices: 291344--291400 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
291334 CATTGTTTAT
* *
291344 TTAT-TTTTAAAATAATAATTA
1 TTATATTTAAAAATAATAATAA
291365 TATATATTTAAAAATAGATAATAA
1 T-TATATTTAAAAATA-ATAATAA
*
291389 TTATATATAAAA
1 TTATATTTAAAA
291401 TAAAATTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 3 0.10
23 19 0.63
24 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TTATATTTAAAAATAATAATAA
Found at i:291469 original size:21 final size:20
Alignment explanation
Indices: 291418--291470 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
291408 TTTTAAAGTT
*
291418 TAAAATTAATTATTTATAAA
1 TAAAATTAATTATATATAAA
* *
291438 TAAAAGATAATTATATATAAT
1 TAAAA-TTAATTATATATAAA
291459 TGAAAATTAATT
1 T-AAAATTAATT
291471 TTTTAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 5 0.19
21 18 0.67
22 4 0.15
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
TAAAATTAATTATATATAAA
Found at i:291647 original size:82 final size:87
Alignment explanation
Indices: 291545--291718 Score: 243
Period size: 86 Copynumber: 2.1 Consensus size: 87
291535 TAAGAAAAGC
* *
291545 ATTTTTCAATAATAATCATTCAATGCAATTA-AA-ATTT-TT-ATTTACAAATTAGATAAATATT
1 ATTTTTCAATAATAATCATTCAATACAATTAGAATATTTATTGATTTACAAATTAGACAAATATT
*
291606 ATTAATATTCATAATAAAAAAT
66 ATTAATATTAATAATAAAAAAT
* * *
291628 ATTTTT-AATAA-AAGTCATTCGATACAATTAGAATTTTTATTGATTTACAAATTAGACAAATCT
1 ATTTTTCAATAATAA-TCATTCAATACAATTAGAATATTTATTGATTTACAAATTAGACAAATAT
291691 TATTAATATTAATAATAAAAAAT
65 TATTAATATTAATAATAAAAAAT
291714 ATTTT
1 ATTTT
291719 AAATGGGTAA
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
81 2 0.03
82 19 0.24
83 8 0.10
84 3 0.04
85 2 0.03
86 46 0.57
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.43
Consensus pattern (87 bp):
ATTTTTCAATAATAATCATTCAATACAATTAGAATATTTATTGATTTACAAATTAGACAAATATT
ATTAATATTAATAATAAAAAAT
Found at i:294918 original size:30 final size:29
Alignment explanation
Indices: 294873--294930 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
294863 ATCCTGACCC
*
294873 GATTCCCCCGT-CCCCCTCCCACGAGTCCT
1 GATTCCCCCCTCCCCCCTCCCAC-AGTCCT
294902 GATTCCCCCCTGCCCCCCTCCCACAGTCC
1 GATTCCCCCCT-CCCCCCTCCCACAGTCC
294931 CACGAGTCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 10 0.38
30 5 0.19
31 11 0.42
ACGTcount: A:0.10, C:0.59, G:0.12, T:0.19
Consensus pattern (29 bp):
GATTCCCCCCTCCCCCCTCCCACAGTCCT
Found at i:295568 original size:15 final size:16
Alignment explanation
Indices: 295535--295568 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
295525 GGTAGTATGA
295535 ATATTGAAATGAGAAT
1 ATATTGAAATGAGAAT
295551 ATATTGAAATGA-AAT
1 ATATTGAAATGAGAAT
295566 ATA
1 ATA
295569 AGAGATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
ATATTGAAATGAGAAT
Found at i:299183 original size:26 final size:27
Alignment explanation
Indices: 299132--299183 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
299122 TAATTAGGTA
* *
299132 TTTATTTTTATTATATTTAATTAAATT
1 TTTATATTTATTATATTTAATCAAATT
299159 TTTATATTT-TTAT-TTTAAATCAAAT
1 TTTATATTTATTATATTT-AATCAAAT
299184 AAAATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 3 0.14
26 11 0.50
27 8 0.36
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTATATTTATTATATTTAATCAAATT
Found at i:302907 original size:151 final size:151
Alignment explanation
Indices: 302720--303024 Score: 533
Period size: 151 Copynumber: 2.0 Consensus size: 151
302710 AACATCATTC
*
302720 AGAGTCAAGTAGCATCACTTTGAAACCTCGAGATTTAGGTTGGTCAACTTACCAATTTATTAAAC
1 AGAGTCAAGTAGCATCACTTTGAAACCTCAAGATTTAGGTTGGTCAACTTACCAATTTATTAAAC
* *
302785 AACAG-AGTTCAAGGAATACTACCTAGTGATACAAAAGCAAATCCATTAAAGGAAGGTAAGGAAC
66 AACAGAACTT-AAGGAATACTACCTAGTGATACAAAAGCAAATCCAATAAAGGAAGGTAAGGAAC
302849 ATGTCAAGACTATATCACTTTG
130 ATGTCAAGACTATATCACTTTG
*
302871 AGAGTCAAGTAGCATCACTTTGAAACCAT-AAGATTTAGGTTGGTCAACTTGCCAATTTATTAAA
1 AGAGTCAAGTAGCATCACTTTGAAACC-TCAAGATTTAGGTTGGTCAACTTACCAATTTATTAAA
*
302935 CAACAGAACTTAAGGAATACTACCTAGTGATACAAAAGCAAATCCAATAAGGGAAGGTAAGGAAC
65 CAACAGAACTTAAGGAATACTACCTAGTGATACAAAAGCAAATCCAATAAAGGAAGGTAAGGAAC
303000 ATGTCAAGACTATATCACTTTG
130 ATGTCAAGACTATATCACTTTG
303022 AGA
1 AGA
303025 AGTGGTAAGG
Statistics
Matches: 147, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
151 143 0.97
152 4 0.03
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (151 bp):
AGAGTCAAGTAGCATCACTTTGAAACCTCAAGATTTAGGTTGGTCAACTTACCAATTTATTAAAC
AACAGAACTTAAGGAATACTACCTAGTGATACAAAAGCAAATCCAATAAAGGAAGGTAAGGAACA
TGTCAAGACTATATCACTTTG
Found at i:306037 original size:15 final size:15
Alignment explanation
Indices: 306017--306047 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
306007 TTTTAGTTAA
*
306017 ATTTTATATTATTTT
1 ATTTTAAATTATTTT
306032 ATTTTAAATTATTTT
1 ATTTTAAATTATTTT
306047 A
1 A
306048 AGAGTAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTTAAATTATTTT
Found at i:310788 original size:20 final size:21
Alignment explanation
Indices: 310763--310807 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
310753 AAGTTTTTAC
*
310763 ATTTTTATGTTTTTG-TTATG
1 ATTTTTATGTTTATGATTATG
310783 ATTTTTATGTTTATGATTATG
1 ATTTTTATGTTTATGATTATG
310804 -TTTT
1 ATTTT
310808 GAAGTTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.18, C:0.00, G:0.13, T:0.69
Consensus pattern (21 bp):
ATTTTTATGTTTATGATTATG
Found at i:311463 original size:24 final size:22
Alignment explanation
Indices: 311436--311488 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
311426 AATAGTTTTT
311436 TTTAATTATAATAATATTGTATAA
1 TTTAATTATAATAATATT-T-TAA
*
311460 TTTAA--ATATTAATATTTTAA
1 TTTAATTATAATAATATTTTAA
*
311480 ATTAATTAT
1 TTTAATTAT
311489 TTTAAAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 7 0.28
21 1 0.04
22 12 0.48
24 5 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAATTATAATAATATTTTAA
Found at i:311489 original size:14 final size:13
Alignment explanation
Indices: 311467--311539 Score: 50
Period size: 14 Copynumber: 5.7 Consensus size: 13
311457 TAATTTAAAT
311467 ATTAATATTTTAA
1 ATTAATATTTTAA
311480 ATTAATTATTTTAA
1 ATTAA-TATTTTAA
311494 AGTTAA-A---T--
1 A-TTAATATTTTAA
311502 ATTAATATTTTAA
1 ATTAATATTTTAA
*
311515 CTTAATTATTTTAA
1 ATTAA-TATTTTAA
311529 AGTTAAATATT
1 A-TT-AATATT
311540 AATATTTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 20
0.68 0.03 0.29
Matches are distributed among these distances:
7 4 0.09
8 2 0.04
10 1 0.02
11 1 0.02
13 10 0.21
14 17 0.36
15 10 0.21
16 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (13 bp):
ATTAATATTTTAA
Found at i:311493 original size:22 final size:21
Alignment explanation
Indices: 311480--311581 Score: 77
Period size: 20 Copynumber: 5.4 Consensus size: 21
311470 AATATTTTAA
311480 ATTAATTATTTTAAAGTTAAAT
1 ATTAA-TATTTTAAAGTTAAAT
*
311502 ATTAATATTTT-AACTT--A-
1 ATTAATATTTTAAAGTTAAAT
311519 A-T--TATTTTAAAGTTAAAT
1 ATTAATATTTTAAAGTTAAAT
*
311537 ATTAATATTTT-TA-TT---T
1 ATTAATATTTTAAAGTTAAAT
*
311553 TTTAATATTTT-AAGTTAAAT
1 ATTAATATTTTAAAGTTAAAT
311573 ATTAATATT
1 ATTAATATT
311582 CATCAAACTT
Statistics
Matches: 63, Mismatches: 6, Indels: 24
0.68 0.06 0.26
Matches are distributed among these distances:
14 6 0.10
15 4 0.06
16 13 0.21
17 4 0.06
18 2 0.03
19 3 0.05
20 14 0.22
21 12 0.19
22 5 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (21 bp):
ATTAATATTTTAAAGTTAAAT
Found at i:311504 original size:35 final size:35
Alignment explanation
Indices: 311461--311581 Score: 174
Period size: 35 Copynumber: 3.4 Consensus size: 35
311451 ATTGTATAAT
311461 TTAAATATTAATATTTTAAATTAATTATTTTAAAG
1 TTAAATATTAATATTTTAAATTAATTATTTTAAAG
*
311496 TTAAATATTAATATTTTAACTTAATTATTTTAAAG
1 TTAAATATTAATATTTTAAATTAATTATTTTAAAG
**
311531 TTAAATATTAATATTTTTATTTTTTAA-TATTTT-AAG
1 TTAAATATTAATA-TTTTA--AATTAATTATTTTAAAG
311567 TTAAATATTAATATT
1 TTAAATATTAATATT
311582 CATCAAACTT
Statistics
Matches: 80, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
35 49 0.61
36 21 0.26
37 6 0.08
38 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (35 bp):
TTAAATATTAATATTTTAAATTAATTATTTTAAAG
Found at i:316344 original size:14 final size:15
Alignment explanation
Indices: 316322--316355 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
316312 TTTATTGATG
*
316322 AAAACAATT-TTGTC
1 AAAAAAATTATTGTC
316336 AAAAAAATTATTGTC
1 AAAAAAATTATTGTC
316351 AAAAA
1 AAAAA
316356 TTCATCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (15 bp):
AAAAAAATTATTGTC
Found at i:320337 original size:30 final size:29
Alignment explanation
Indices: 320301--320359 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
320291 TTATTTATAA
320301 AATTAAA-ATATCTTATAATCGAGTTTAGAT
1 AATTAAATATA-CTTATAA-CGAGTTTAGAT
* *
320331 AATTAAATTTACTTATAACGGGTTTAGAT
1 AATTAAATATACTTATAACGAGTTTAGAT
320360 TCAAATTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 10 0.38
30 14 0.54
31 2 0.08
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.41
Consensus pattern (29 bp):
AATTAAATATACTTATAACGAGTTTAGAT
Found at i:322509 original size:152 final size:149
Alignment explanation
Indices: 322231--322622 Score: 419
Period size: 152 Copynumber: 2.6 Consensus size: 149
322221 TTTGAAGTTG
* * * *
322231 AAAATTGGAAATTAAAAATTGAAAACAG-TTCATTATTAAAAACTGAATATATCAGCAAAAGAGT
1 AAAATTGGAAATTAAAAATT-AAAA-AGAATCATTA-TAAAAACTAAATAAATCAGCAAAAAAGT
* * * *
322295 CTGAAGTTGGAATCTAAAATTAAATCGTCATAAAAATCTCGCTGTAAAACAGTCTAAAGTTGAAA
63 CTGAAGTTGGAAACTAAAAATAAATCATAATAAAAATCTCGCTGTAAAACAGTCTAAAGTTGAAA
*
322360 ATTAAAAATAAATCAA-ACACTAA
128 ATTAAAAATAAAT-AACA-AATAA
* * *
322383 AAAATTGGAAATTAAAAATTAAAAATGAATAATTATAAAAGACAAAATAAATCAGCAAAAAAATC
1 AAAATTGGAAATTAAAAATTAAAAA-GAATCATTATAAAA-ACTAAATAAATCAGCAAAAAAGTC
* *
322448 TGAAGTTGGAAACTAAAAATAAATCATAATAAAAATCTTGCTGTACAAA-AGTAC-AACGTTGAA
64 TGAAGTTGGAAACTAAAAATAAATCATAATAAAAATCTCGCTGTA-AAACAGT-CTAAAGTTGAA
*
322511 ATTTAAAAATAAATAACAAATAA
127 AATTAAAAATAAATAACAAATAA
* * *
322534 AAACATTGGAAACTAAAAA-T----A-AATCATTATAAAAAATTAAATAAATTAGCAAAAAAGTC
1 AAA-ATTGGAAATTAAAAATTAAAAAGAATCATTAT-AAAAACTAAATAAATCAGCAAAAAAGTC
** *
322593 TGAAGTTACAAATTAAAAATAAATCA-AATA
64 TGAAGTTGGAAACTAAAAATAAATCATAATA
322623 TGAAAAAGTT
Statistics
Matches: 208, Mismatches: 24, Indels: 24
0.81 0.09 0.09
Matches are distributed among these distances:
144 4 0.02
145 51 0.25
146 4 0.02
147 1 0.00
150 1 0.00
151 20 0.10
152 123 0.59
153 4 0.02
ACGTcount: A:0.56, C:0.09, G:0.10, T:0.25
Consensus pattern (149 bp):
AAAATTGGAAATTAAAAATTAAAAAGAATCATTATAAAAACTAAATAAATCAGCAAAAAAGTCTG
AAGTTGGAAACTAAAAATAAATCATAATAAAAATCTCGCTGTAAAACAGTCTAAAGTTGAAAATT
AAAAATAAATAACAAATAA
Found at i:322710 original size:22 final size:21
Alignment explanation
Indices: 322685--322750 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 21
322675 AAGAAACTAA
322685 AAATAAATCATTACAAAAAACT
1 AAATAAATCATTA-AAAAAACT
322707 AAATAAATCAATCATTATAAAAAACT
1 AAAT--A--AATCATTA-AAAAAACT
322733 AAATAAATCAGTTAAAAA
1 AAATAAATCA-TTAAAAA
322751 GTTTGAAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
22 13 0.34
23 3 0.08
24 2 0.05
26 20 0.53
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.24
Consensus pattern (21 bp):
AAATAAATCATTAAAAAAACT
Found at i:322719 original size:26 final size:26
Alignment explanation
Indices: 322678--322742 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 26
322668 AATAGGGAAG
*
322678 AAACT-AA-AAATAAATCATTACAAA
1 AAACTAAATAAATCAATCATTACAAA
*
322702 AAACTAAATAAATCAATCATTATAAA
1 AAACTAAATAAATCAATCATTACAAA
322728 AAACTAAATAAATCA
1 AAACTAAATAAATCA
322743 GTTAAAAAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 5 0.14
25 2 0.05
26 30 0.81
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.23
Consensus pattern (26 bp):
AAACTAAATAAATCAATCATTACAAA
Found at i:322738 original size:161 final size:158
Alignment explanation
Indices: 322543--322830 Score: 416
Period size: 161 Copynumber: 1.8 Consensus size: 158
322533 AAAACATTGG
* *
322543 AAACTAAAAATAAATCATTATAAAAAATTAAATAAATTAGCAAAAAAGTCTGAAGTTACAAATTA
1 AAACTAAAAATAAATCATTATAAAAAACTAAATAAATCAGCAAAAAAGTCTGAAGTTACAAATTA
*
322608 AAAATAAATCAAATATGAAAAAGTTGGAAACTAAAAATAAATCATTACAAAATAA-ACATAAATA
66 AAAATAAATCAAAAATGAAAAA-TTGGAAACTAAAAATAAATCATTACAAAATAATA-ATAAATA
322672 GGGAAGAAACTAAAAATAAATCATTACAAA
129 GGGAAGAAACTAAAAATAAATCATTACAAA
* ** * * *
322702 AAACTAAATAAATCAATCATTATAAAAAACTAAATAAATCAGTTAAAAAGTTTGAAGTTGCAGAT
1 AAACT-AA-AAATAAATCATTATAAAAAACTAAATAAATCAGCAAAAAAGTCTGAAGTTACAAAT
* * * *
322767 TAAAAATAAATCAAAAATTAAAAATTGTAAACTCAAAATAAATCATTATAAAATAATAATAAAT
64 TAAAAATAAATCAAAAATGAAAAATTGGAAACTAAAAATAAATCATTACAAAATAATAATAAAT
322831 CAAAAATAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
159 5 0.04
160 37 0.33
161 71 0.63
ACGTcount: A:0.60, C:0.08, G:0.07, T:0.25
Consensus pattern (158 bp):
AAACTAAAAATAAATCATTATAAAAAACTAAATAAATCAGCAAAAAAGTCTGAAGTTACAAATTA
AAAATAAATCAAAAATGAAAAATTGGAAACTAAAAATAAATCATTACAAAATAATAATAAATAGG
GAAGAAACTAAAAATAAATCATTACAAA
Found at i:324948 original size:16 final size:16
Alignment explanation
Indices: 324914--324951 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
324904 AATTAGAAAT
**
324914 AAAAAATAAATCATTA
1 AAAAAATAAATCAGCA
324930 AAAAAATAAATCAGCA
1 AAAAAATAAATCAGCA
324946 AAAAAA
1 AAAAAA
324952 GTCTGAAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.74, C:0.08, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAAAATAAATCAGCA
Found at i:324995 original size:18 final size:18
Alignment explanation
Indices: 324965--325018 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
324955 TGAAGTTGCA
324965 AATTA-AAAA-TATAAAT
1 AATTATAAAATTATAAAT
* *
324981 CATTATAAAATTATAAAA
1 AATTATAAAATTATAAAT
* *
324999 AATTAAAAAATTAAAAAT
1 AATTATAAAATTATAAAT
325017 AA
1 AA
325019 ACATTTCATC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 22 0.73
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
AATTATAAAATTATAAAT
Found at i:326881 original size:3 final size:3
Alignment explanation
Indices: 326873--326898 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
326863 TTGTGCCCCT
326873 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
326899 GGGTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:331404 original size:27 final size:26
Alignment explanation
Indices: 331374--331475 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
331364 AAAAATCACA
331374 TTGAAAATGTAATTGTTACACGTCATG
1 TTGAAAATGTAATTGTTACACG-CATG
* *
331401 TTGAAAATTTAATTGTTACACACCATG
1 TTGAAAATGTAATTGTTACAC-GCATG
* * * * *
331428 TTGAAAATTTAGTTGTTATATGCTATA
1 TTGAAAATGTAATTGTTACACGC-ATG
331455 TTGAAAAATGTAATTGTTACA
1 TTG-AAAATGTAATTGTTACA
331476 TGTTGTATTG
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 47 0.76
28 14 0.23
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (26 bp):
TTGAAAATGTAATTGTTACACGCATG
Found at i:331471 original size:28 final size:28
Alignment explanation
Indices: 331373--331489 Score: 89
Period size: 27 Copynumber: 4.3 Consensus size: 28
331363 AAAAAATCAC
*
331373 ATTG-AAAATGTAATTGTTACACG-TCAT
1 ATTGAAAAATGTAATTGTTACATGCT-AT
* * ** *
331400 GTTG-AAAATTTAATTGTTACACACCAT
1 ATTGAAAAATGTAATTGTTACATGCTAT
* * * *
331427 GTTG-AAAATTTAGTTGTTATATGCTAT
1 ATTGAAAAATGTAATTGTTACATGCTAT
* *
331454 ATTGAAAAATGTAATTGTTACATGTTGT
1 ATTGAAAAATGTAATTGTTACATGCTAT
331482 ATTGAAAA
1 ATTGAAAA
331490 TTCAATTATG
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
27 47 0.64
28 26 0.36
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (28 bp):
ATTGAAAAATGTAATTGTTACATGCTAT
Found at i:331475 original size:82 final size:81
Alignment explanation
Indices: 331373--331601 Score: 269
Period size: 82 Copynumber: 2.8 Consensus size: 81
331363 AAAAAATCAC
* * *
331373 ATTGAAAATGTAATTGTTACACGTCATGTTGAAAATTTAATTGTTACACACCATGTTGAAAATTT
1 ATTGAAAATGTAATTGTTACATGTCATGTTGAAAATTTAATTATTACACACCATGTTAAAAATTT
331438 AGTTGTTATATGCTAT
66 AGTTGTTATATGCTAT
** * * * *
331454 ATTGAAAAATGTAATTGTTACATGTTGTATTGAAAATTCAATTATGACACACTATGTTAAAAAAT
1 ATTG-AAAATGTAATTGTTACATGTCATGTTGAAAATTTAATTATTACACACCATGTT-AAAAAT
* *
331519 ATAGTTGTTATATGTTAT
64 TTAGTTGTTATATGCTAT
* * * * * * *
331537 ATTGAAAGTTTAGTTATTACATATCATGTTGAAAAATGTAATTATTACATACCATGTTAAAAATT
1 ATTGAAAATGTAATTGTTACATGTCATGTTG-AAAATTTAATTATTACACACCATGTTAAAAATT
331602 ATAATTGAAA
Statistics
Matches: 120, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
81 4 0.03
82 70 0.58
83 46 0.38
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (81 bp):
ATTGAAAATGTAATTGTTACATGTCATGTTGAAAATTTAATTATTACACACCATGTTAAAAATTT
AGTTGTTATATGCTAT
Found at i:331487 original size:55 final size:54
Alignment explanation
Indices: 331428--331586 Score: 149
Period size: 55 Copynumber: 2.9 Consensus size: 54
331418 ACACACCATG
* * *
331428 TTGAAAATTTAGTTGTTATATGCTATATTGAAAAATGTAATTGTTACATGTTGTA
1 TTGAAAATTTAGTTATTATAT-CTATGTTGAAAAATGTAATTGTTACATGTTATA
* * * * * * * * *
331483 TTGAAAATTCAATTATGACACACTATGTTAAAAAATATAGTTGTTATATGTTATA
1 TTGAAAATTTAGTTATTATA-TCTATGTTGAAAAATGTAATTGTTACATGTTATA
* *
331538 TTGAAAGTTTAGTTATTACATATC-ATGTTGAAAAATGTAATTATTACAT
1 TTGAAAATTTAGTTATT--ATATCTATGTTGAAAAATGTAATTGTTACAT
331587 ACCATGTTAA
Statistics
Matches: 78, Mismatches: 23, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
55 75 0.96
56 1 0.01
57 2 0.03
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (54 bp):
TTGAAAATTTAGTTATTATATCTATGTTGAAAAATGTAATTGTTACATGTTATA
Found at i:331606 original size:28 final size:28
Alignment explanation
Indices: 331550--331607 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
331540 GAAAGTTTAG
* *
331550 TTATTACATATCATGTTGAAAAATGTAA
1 TTATTACATACCATGTTGAAAAATATAA
331578 TTATTACATACCATGTT-AAAAATTATAA
1 TTATTACATACCATGTTGAAAAA-TATAA
331606 TT
1 TT
331608 GAAAATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (28 bp):
TTATTACATACCATGTTGAAAAATATAA
Found at i:333519 original size:11 final size:10
Alignment explanation
Indices: 333496--333525 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
333486 GTATACTAAA
333496 TTTTCCTTTT
1 TTTTCCTTTT
333506 TTTTCCTATTT
1 TTTTCCT-TTT
333517 TTTTCCTTT
1 TTTTCCTTT
333526 ATCTTTATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTCCTTTT
Found at i:333763 original size:18 final size:19
Alignment explanation
Indices: 333732--333773 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
333722 AAAATTTATA
*
333732 TTTAAATTATTAATAAAAT
1 TTTATATTATTAATAAAAT
**
333751 TTTATATTA-TAATTTAAT
1 TTTATATTATTAATAAAAT
333769 TTTAT
1 TTTAT
333774 TTCAAAAGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTATATTATTAATAAAAT
Found at i:337618 original size:22 final size:24
Alignment explanation
Indices: 337576--337620 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
337566 CCCTTGTTTT
*
337576 CGCTCTTTCTCTCGCCGCCTTCCC
1 CGCTCTTTCTCTCGCCCCCTTCCC
337600 CGCT-TTTCTCT-GCCCCCTTCC
1 CGCTCTTTCTCTCGCCCCCTTCC
337621 TTACCGTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 7 0.35
24 4 0.20
ACGTcount: A:0.00, C:0.53, G:0.11, T:0.36
Consensus pattern (24 bp):
CGCTCTTTCTCTCGCCCCCTTCCC
Found at i:345733 original size:92 final size:92
Alignment explanation
Indices: 345576--345758 Score: 305
Period size: 92 Copynumber: 2.0 Consensus size: 92
345566 CAATAGATGG
* *
345576 GAGGGACTCAAACTTAAGCCCAACCTGTTGCACTGGTTCTTTACTAATAAAGGAAAGAGACTTTT
1 GAGGGACTCAAACTTAAACCCAACCTGTTGCACTGGTTCTTTACCAATAAAGGAAAGAGACTTTT
345641 ACACTAAACTTAAACCTAACATTGTGA
66 ACACTAAACTTAAACCTAACATTGTGA
* *
345668 GAGGGATTCAAACTTAAACCCAACCTGTTGCACTGGTTTTTTACCAATAAAGGAAA-AGGACTTT
1 GAGGGACTCAAACTTAAACCCAACCTGTTGCACTGGTTCTTTACCAATAAAGGAAAGA-GACTTT
*
345732 TACACTAAACTTAAACCTAACCTTGTG
65 TACACTAAACTTAAACCTAACATTGTG
345759 TGATTTTCAA
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
91 1 0.01
92 84 0.99
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (92 bp):
GAGGGACTCAAACTTAAACCCAACCTGTTGCACTGGTTCTTTACCAATAAAGGAAAGAGACTTTT
ACACTAAACTTAAACCTAACATTGTGA
Found at i:346294 original size:27 final size:27
Alignment explanation
Indices: 346249--346312 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
346239 ATAATATTTT
*
346249 ATAATTCTTTTGAATTAATA-TTATGTGA
1 ATAATT-TTTTCAATTAATAGTT-TGTGA
* *
346277 ATATTTTTTTCAATTAATAGTTTGTGG
1 ATAATTTTTTCAATTAATAGTTTGTGA
346304 ATAATTTTT
1 ATAATTTTT
346313 ATTTTCATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 24 0.77
28 7 0.23
ACGTcount: A:0.31, C:0.03, G:0.11, T:0.55
Consensus pattern (27 bp):
ATAATTTTTTCAATTAATAGTTTGTGA
Found at i:356340 original size:14 final size:14
Alignment explanation
Indices: 356285--356347 Score: 51
Period size: 14 Copynumber: 4.4 Consensus size: 14
356275 ATACTTGTAT
356285 TTTTTAATATTA-A
1 TTTTTAATATTATA
*
356298 TTTTTATATAATATCA
1 TTTTTA-ATATTAT-A
*
356314 TCTCTTAA-A-TATA
1 T-TTTTAATATTATA
356327 TTTTTAATATTATA
1 TTTTTAATATTATA
356341 TATTTTA
1 T-TTTTA
356348 TTTTCATTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
12 5 0.12
13 9 0.22
14 13 0.32
15 6 0.15
16 3 0.08
17 4 0.10
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTTAATATTATA
Found at i:356377 original size:33 final size:33
Alignment explanation
Indices: 356339--356422 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
356329 TTTAATATTA
* *
356339 TATATTTTATTTTCATTTCTTATTATAGTTTTG
1 TATATTTTATTTTCATTTCTTAATATAATTTTG
* *
356372 TATATTTTACTTTCATTTCTTAATATAATTTTT
1 TATATTTTATTTTCATTTCTTAATATAATTTTG
* * *
356405 TAGATTATATTTTTATTT
1 TATATTTTATTTTCATTT
356423 TAATATTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (33 bp):
TATATTTTATTTTCATTTCTTAATATAATTTTG
Found at i:361479 original size:2 final size:2
Alignment explanation
Indices: 361472--361500 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
361462 TCTTCTTCTT
361472 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
361501 GTGTCAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Done.