Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018399263.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2532.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7933
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.29
Warning! 1584 characters in sequence are not A, C, G, or T
Found at i:347 original size:170 final size:170
Alignment explanation
Indices: 1--695 Score: 853
Period size: 171 Copynumber: 4.1 Consensus size: 170
*
1 CAATTATGAGATTATAAAACCATTTAAAGA-ATGTAATAAAGCTTTTGAAGGCTTGGATGACTAT
1 CAATTATGAGATTATAAAACCATTTAAAGAGA-GTAATAAAGCTTTTGAAGGCTTGGGTGACTAT
* * *
65 AAATGAGCTTTTCTTGCCAATGAATGGGTTTTTCTTCATGTTTCCCAAGGTAAATATTCAATTA-
65 AAATG-GCTTTTCTTGCCAATGAATGAGTTTTTCTTCATGTTTCCCAAGGCAAACATTCAATTAT
* *
129 AAATCTGTTTTAACAAAAAATGTGAAAACATTCAACTTAAACT
129 AAATCTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAAAAT
* * *
172 CAATTATGAGATTATAACACCATTTAAAGATAGTAATAAAGCTTTTAAAGGCTTGGGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATA
* * * * * *
237 AAAGGGTTTTCATACCAATGAATGAGTTTTTCTTCATGATTCCCAAGGCAAACACTCAATTATAA
66 AATGGCTTTTCTTGCCAATGAATGAGTTTTTCTTCATGTTTCCCAAGGCAAACATTCAATTATAA
* * * *
302 A-CTGGTTTAACCAAAAATGTCTAAAAACTCAACTTAAAAT
131 ATCTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAAAAT
* * * * *
342 CAATTATAAGATTATAAAACTATTTAAAAAGAGTTATAATGCTTTTGAAGGCTTGGGTGACTATA
1 CAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATA
* **
407 AATGGGCTTTTCTTGCGAATGAAT-AGGTTTTTCTTCATGTTTTTCAAGGCAAACATTCAATTAT
66 AAT-GGCTTTTCTTGCCAATGAATGA-GTTTTTCTTCATGTTTCCCAAGGCAAACATTCAATTAT
* *
471 AAATCTGTTTTAACTAAAAAATGTAAAGAAATTAAACTTCAAAT
129 AAATCTGTTTTAAC-AAAAAATGTAAA-AAATTCAACTTAAAAT
* * * *** * * *
515 CAATT-TTATGACTACAAAATGGTTTAAAGAGAGTAATAAGGCTTTTGAAGGCTTAGGTGATTAT
1 CAATTATGA-GATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTAT
** * *
579 AAATGGACTTTTCTTGTTAATGAATGAGTTTCTCTTCATGTTTCCTAAGGCAAACATTCAATTAT
65 AAATGG-CTTTTCTTGCCAATGAATGAGTTTTTCTTCATGTTTCCCAAGGCAAACATTCAATTAT
* *
644 -AATCTGTTTTGACTAAAAATGTGAAAAAATTCAACTTAAAAT
129 AAATCTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAAAAT
686 CAATTATGAG
1 CAATTATGAG
696 GTAATAAGGC
Statistics
Matches: 448, Mismatches: 64, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
170 142 0.32
171 147 0.33
172 33 0.07
173 125 0.28
174 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (170 bp):
CAATTATGAGATTATAAAACCATTTAAAGAGAGTAATAAAGCTTTTGAAGGCTTGGGTGACTATA
AATGGCTTTTCTTGCCAATGAATGAGTTTTTCTTCATGTTTCCCAAGGCAAACATTCAATTATAA
ATCTGTTTTAACAAAAAATGTAAAAAATTCAACTTAAAAT
Found at i:822 original size:149 final size:149
Alignment explanation
Indices: 547--837 Score: 383
Period size: 149 Copynumber: 2.0 Consensus size: 149
537 TTTAAAGAGA
* * * ***
547 GTAATAAGGCTTTTGAAGGCTTAGGTGATTATAAATGGACTTTTCTTGTTAATGAATGAGTTTCT
1 GTAATAAGGCTTTTAAAGGCTTAAGTGACTATAAATGGACTTTTCTTACCAATGAATGAGTTTCT
* * * * *
612 CTTCATGTTTCCTAAGGCAAACATTCAATTATAATCTGTTTTGACTAAAAATGTGAAAAAATTCA
66 CTTCATGTTTCCTAAGGAAAACATTCAATTATAATATGTCTTAACTAAAAATATGAAAAAATTCA
677 ACTTAAAATCAATTATGAG
131 ACTTAAAATCAATTATGAG
* *
696 GTAATAAGGCTTTTAAAGGTTTAAGTGACTATAAATGGGCCTTTT-TTACCAATGAATG-GTTTT
1 GTAATAAGGCTTTTAAAGGCTTAAGTGACTATAAAT-GGACTTTTCTTACCAATGAATGAG-TTT
*
759 TTCTTCATGTTT-CTCAAGGAAAACATTCAATTATAATATGTCTTAACTAAAAATAT-AACAAAA
64 CTCTTCATGTTTCCT-AAGGAAAACATTCAATTATAATATGTCTTAACTAAAAATATGAA-AAAA
*
822 TTCAACTTAAACTCAA
127 TTCAACTTAAAATCAA
838 CCATGAGATT
Statistics
Matches: 123, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
148 5 0.04
149 111 0.90
150 7 0.06
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (149 bp):
GTAATAAGGCTTTTAAAGGCTTAAGTGACTATAAATGGACTTTTCTTACCAATGAATGAGTTTCT
CTTCATGTTTCCTAAGGAAAACATTCAATTATAATATGTCTTAACTAAAAATATGAAAAAATTCA
ACTTAAAATCAATTATGAG
Found at i:1081 original size:168 final size:168
Alignment explanation
Indices: 696--1321 Score: 691
Period size: 168 Copynumber: 3.7 Consensus size: 168
686 CAATTATGAG
* * ** * * *
696 GTAATAAGGCTTTTAAAGGTTTAAGTGACTATAAATGGGCCTTTT-TTACCAATGAATGGTTTTT
1 GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGG-CTTTTCTTGCGAATGAATGGGTTTT
* * * *
760 TCTTCATGTTTCTCAAGGAAAACATTCAATTATAATATGTCTTAACTAAAAATATAACAAAATTC
65 TCTTCATGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAACTAAAAATGTAAC---ATTC
* ** *
825 AACTTAAACTCAACCATGAGATTATAAAACCATTTAAGGAGA
127 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGAGA
*
867 GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGAGAATGAATGGGTTTTT
1 GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCGAATGAATGGGTTTTT
* *
932 CTTCATGTTTCCCAATGCAAACATTCAATTATAATCTGTTTTAACTAAAAATGTAACATTCAACT
66 CTTCATGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAACTAAAAATGTAACATTCAACT
* *
997 TAAAATCAATTATGAGATTTTAAAACCCTTTAAAGAGA
131 TAAAATCAATTATGAGATTATAAAACCATTTAAAGAGA
* * * * * *
1035 GTAATAAGGCTATTGAACGCTTGGGTTACTATAAATGGGATTTTCTTGCGAATGAATGTGTCTTT
1 GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCGAATGAATGGGTTTTT
*** * * * *
1100 CTTCATGTTTTTTAAGGTAAACATTCAATTATAATCTCTTTTAACTAAAAATGTAAAAACCATTT
66 CTTCATGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAACTAAAAATGT---AA-CATTC
* * * * * * *
1165 AGCTTAAAATCATTTCTGGGACTACAAAACCATTTAAA-ACAA
127 AACTTAAAATCAATTATGAGATTATAAAACCATTTAAAGA-GA
* * * * ****
1207 ATAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGAGCTTTTCTTGCCAATAAACAATTTTTT
1 GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCGAATGAATGGGTTTTT
* *
1272 CTTCATGTTTCCC-AGTGCAAACATTCAATTATAGTATGTTTTAACCAAAA
66 CTTCATGTTTCCCAAG-GCAAACATTCAATTATAATATGTTTTAACTAAAA
1322 NNNNNNNNNN
Statistics
Matches: 384, Mismatches: 64, Indels: 13
0.83 0.14 0.03
Matches are distributed among these distances:
168 146 0.38
170 5 0.01
171 107 0.28
172 126 0.33
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (168 bp):
GTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCGAATGAATGGGTTTTT
CTTCATGTTTCCCAAGGCAAACATTCAATTATAATATGTTTTAACTAAAAATGTAACATTCAACT
TAAAATCAATTATGAGATTATAAAACCATTTAAAGAGA
Found at i:2680 original size:171 final size:171
Alignment explanation
Indices: 2263--2910 Score: 572
Period size: 171 Copynumber: 3.8 Consensus size: 171
2253 NNNNNNNNNT
* * ** * * * * * *
2263 ATTTATAGTCACCCAAGCCTTCAAAAGCCTTTTTATTCTCTTTAAATAGTTTTATAACCTCAACA
1 ATTTATAGTCACCCAAGCATTCAAAAGACTTACTACTCTCTTGAAATGGTGTTATAACATCAAAA
* * *
2328 TTGATTTTAAGTTAAATTGTTTTATATGTTTT-GTTAAAACAGATTATAATTGAATGTTTTCCTT
66 TTGATTTTAAGTTGAATTTTTTTATAT-TTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT
* ** * * * *
2392 GGTAAATTTGAAGAAAAAGC-CATTCAATAGCAAGAAAAG-CC
130 GGGAAACATAAAGAAAGA-CACATTCATTCGCAAGAAAAGCCC
* * ********************
2433 ATTTATAGTCACCCAAGTC-TTCAAAAGTCTTATTACT-TGCTTNNNNNNNNNNNNNNNNNNNNA
1 ATTTATAGTCACCCAAG-CATTCAAAAGACTTACTACTCT-CTTGAAATGGTGTTATAACATCAA
* *
2496 AATTGATTTTAAGTTGAATTTTTTTATATTTTTGGTTAGAACAGGTTATAATTGAATGTTTACCT
64 AATTGATTTTAAGTTGAATTTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCT
* * * **
2561 TTGGAAATATAAAGAAAGACATATTCA-TCTTTAAGAAAAGCCC
129 TGGGAAACATAAAGAAAGACACATTCATTC-GCAAGAAAAGCCC
* * * * *
2604 TTTTATAGTCACCCAAGCATTCAATAGCCTTATTACTCTCTTGAAATGGTGTTATAATC-TCATA
1 ATTTATAGTCACCCAAGCATTCAAAAGACTTACTACTCTCTTGAAATGGTGTTATAA-CATCAAA
* * * *
2668 ATTGATTTTAAGTTGAATGTTTGTACATTTTTGGTTAAAATAGATTATAATTGAATGTTTACCTT
65 ATTGATTTTAAGTTGAATTTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTT
* * *
2733 GGGAAACATTAAGAAATACCCATTCATTCGCAAGAAAAGCCC
130 GGGAAACATAAAGAAAGACACATTCATTCGCAAGAAAAGCCC
* * *
2775 ATTTATAGTCACCCAAGCCTTCAAAAGACTTACTACTCTCTTTAAATGGTTTTATAACATCAAAA
1 ATTTATAGTCACCCAAGCATTCAAAAGACTTACTACTCTCTTGAAATGGTGTTATAACATCAAAA
* * * *
2840 TTGATTTTACGTTGAATTGTTTTATATTTTTGGTTAAAACAGACTATAATTGAATGTTTTCCTTG
66 TTGATTTTAAGTTGAATTTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTG
*
2905 GTAAAC
131 GGAAAC
2911 NNNNNNNNNN
Statistics
Matches: 375, Mismatches: 92, Indels: 21
0.77 0.19 0.04
Matches are distributed among these distances:
169 7 0.02
170 119 0.32
171 246 0.66
172 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.38
Consensus pattern (171 bp):
ATTTATAGTCACCCAAGCATTCAAAAGACTTACTACTCTCTTGAAATGGTGTTATAACATCAAAA
TTGATTTTAAGTTGAATTTTTTTATATTTTTGGTTAAAACAGATTATAATTGAATGTTTACCTTG
GGAAACATAAAGAAAGACACATTCATTCGCAAGAAAAGCCC
Found at i:5532 original size:149 final size:149
Alignment explanation
Indices: 5261--5555 Score: 392
Period size: 149 Copynumber: 2.0 Consensus size: 149
5251 TTATAATCTC
* *
5261 ATAATTGACTTTAAGTTGAATTTTTTCACATTTTTGATTAAACCAGATTATAATTGAATGTTTAC
1 ATAATTGACTTTAACTTGAATTTTTTCACATTTTTGATTAAAACAGATTATAATTGAATGTTTAC
*
5326 CTTGGGAAAAATAAAGAAAAACCCATTCATTGATAAGAAAAGCCCATTTATAATCACCCAAGCCT
66 CTTGGGAAAAATAAAGAAAAACCCATTCATTGACAAGAAAAGCCCATTTATAATCACCCAAGCCT
5391 TCAAAAGCCTTATTACATT
131 TCAAAAGCCTTATTACATT
* * * *******
5410 ATAATTGATTTTAACTTGAATTTTTTCACATTTTTGGTTAAAACAGATTGTAATTGAANNNNNNN
1 ATAATTGACTTTAACTTGAATTTTTTCACATTTTTGATTAAAACAGATTATAATTGAATGTTTAC
*** * * * * *
5475 NNNGGGAAACATGAAGAAAAACCCATTCGTTGACAAGAAAAGCCCATTTATAGTCACCTAAGCCT
66 CTTGGGAAAAATAAAGAAAAACCCATTCATTGACAAGAAAAGCCCATTTATAATCACCCAAGCCT
*
5540 TCAAAAGCTTTATTAC
131 TCAAAAGCCTTATTAC
5556 TCTCCTTAAA
Statistics
Matches: 124, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
149 124 1.00
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.33
Consensus pattern (149 bp):
ATAATTGACTTTAACTTGAATTTTTTCACATTTTTGATTAAAACAGATTATAATTGAATGTTTAC
CTTGGGAAAAATAAAGAAAAACCCATTCATTGACAAGAAAAGCCCATTTATAATCACCCAAGCCT
TCAAAAGCCTTATTACATT
Found at i:6897 original size:171 final size:167
Alignment explanation
Indices: 6528--7089 Score: 723
Period size: 171 Copynumber: 3.3 Consensus size: 167
6518 NNNNNNNNNN
* *
6528 CAATTATAATCTGTTTTAACTAAAAATATAAAAACATTCAACTTAAAATCAATTTTAAAGCTATA
1 CAATTATAATCTGTTTTAACTAAAAATATAAAAA-ATTCAACTTAAAATCAATTTGATA-CTATA
* *
6593 AAATCGTTTAAAGAGAGTAATGAGGCTTTTAAAGGCTTTGGTGACTATAAATGGGCTTTTCTTGT
64 AAATCGTTTAAAGAGAGTAATAAGGCTTTTGAAGGC-TTGGTGACTATAAATGGGCTTTTCTTG-
6658 CAATGAATGGGTTTTTCTTCATGTTTAACAAGGCAAACATT
127 CAATGAATGGGTTTTTCTTCATGTTTAACAAGGCAAACATT
* *
6699 CAATTATAATCTGTTTTAACTAAAAATATGAAACAAA-TCAACTTAAAATAAATTATGATATTAT
1 CAATTATAATCTGTTTTAACTAAAAATAT-AAA-AAATTCAACTTAAAATCAATT-TGATACTAT
* *
6763 AAAA-CTATTTAAAAAGAGTAATAAGGCTTTTGAAGGCTTGGTGACTATAAATGGGCTTTTCTTG
63 AAAATC-GTTTAAAGAGAGTAATAAGGCTTTTGAAGGCTTGGTGACTATAAATGGGCTTTTCTTG
* **
6827 CGAATGAATAGGTTTTTCTTCATGTTTTTCAAGGCAAACATT
127 C-AATGAATGGGTTTTTCTTCATGTTTAACAAGGCAAACATT
* * * * * * *
6869 CAATTATAATATGTTTTAACTAAAAAATATAAAGAAATTAAACTTTAAATCAATTTTATGGCCAC
1 CAATTATAATCTGTTTTAACT-AAAAATATAAA-AAATTCAACTTAAAATCAATTTGAT-ACTAT
* * *
6934 AAAATCGTTTAAAGAGAGTAATAAAGCTGTTGAAGGTTTGGGTGACTATAAATGGGCTTTTCTTT
63 AAAATCGTTTAAAGAGAGTAATAAGGCTTTTGAAGGCTT-GGTGACTATAAATGGGCTTTTC-TT
* * **
6999 TCAACGAATGGGTTTTTCTTCATGTTTCCCAAGGCAAACATT
126 GCAATGAATGGGTTTTTCTTCATGTTTAACAAGGCAAACATT
* * *
7041 TAATTATAATCTGTTTTAACAAAAAATGTGAAAAAATTCAACTTAAAAT
1 CAATTATAATCTGTTTTAACTAAAAATAT-AAAAAATTCAACTTAAAAT
7090 TATTTATGAT
Statistics
Matches: 342, Mismatches: 37, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
169 1 0.00
170 94 0.27
171 155 0.45
172 87 0.25
173 5 0.01
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (167 bp):
CAATTATAATCTGTTTTAACTAAAAATATAAAAAATTCAACTTAAAATCAATTTGATACTATAAA
ATCGTTTAAAGAGAGTAATAAGGCTTTTGAAGGCTTGGTGACTATAAATGGGCTTTTCTTGCAAT
GAATGGGTTTTTCTTCATGTTTAACAAGGCAAACATT
Found at i:7539 original size:151 final size:150
Alignment explanation
Indices: 6945--7546 Score: 610
Period size: 151 Copynumber: 4.0 Consensus size: 150
6935 AAATCGTTTA
* * * * * *
6945 AAGA-GAGTAATAAAGCTGTTGAAGGTTTGGGTGACTATAAATGGGCTTTTCTTTTCAACGAATG
1 AAGATGAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATAGGCTTTTCTTGTCAATGAATG
* * * *
7009 GGTTTTTCTTCATGTTTCCCAAGGCAAACATTTAATTATAATCTGTTTTAACAAAAAATGTGAAA
66 GGTTTTTCTTCATGTTTTCCAAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATAT-AAA
* **
7074 AAATTCAACTTAAAATTATTT
130 AAGTTCAACTTAAAAACATTT
* * * *
7095 ATGAT--GTAATAAGGCTTTTGAAGGCTTCGGTGACTATAAATGGGCTTTTCTGGTCAATGAATG
1 AAGATGAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATAGGCTTTTCTTGTCAATGAATG
* * * * * *
7158 GGTTTTTCTTTAT-TTTTCCCAAGGCAAACATTCAATTATAATCCGATTTAATCAAAAATGTGAA
66 GGTTTTTCTTCATGTTTT-CCAAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATATAAA
* *
7222 AAGTCAATTATGAGATTATAAAATCATTT
130 AAGT---TCA--A-CTTA-AAAA-CATTT
* * **
7251 AA-AGCGAGTAATAACGCTTTTGTAA-GCTTGGGTGACTATAAATAGGCTTTTCTTGAGAATGAA
1 AAGA-TGAGTAATAAGGCTTTTG-AAGGCTTGGGTGACTATAAATAGGCTTTTCTTGTCAATGAA
* * * **
7314 TGGGTTTTCCTTCATATTATT-CAAGGCAAATATTCAATTATAATCTGTTTTAACT--AAAATGG
64 TGGGTTTTTCTTCATGTT-TTCCAAGGCAAACATTCAATTATAATCTGTTTTAA-TAAAAAATAT
*
7376 AAAAACCATTCAACTTAAAAACATTT
127 AAAAA--GTTCAACTTAAAAACATTT
* * *
7402 AAGATGAGTAATAAGGCTTTTGAAGGCTTGGGTAACTATAAATAGGCTTTTCTTGCCAATAAATG
1 AAGATGAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATAGGCTTTTCTTGTCAATGAATG
* * * *
7467 GCTTTTTCTTCATGTTTTCCAATGCAAACATTCAATTACAATCTGTTTTAATAAAAAACATAAGA
66 GGTTTTTCTTCATGTTTTCCAAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATATAA-A
7532 AAGTTCAACTTAAAA
130 AAGTTCAACTTAAAA
7547 TTAATTATGA
Statistics
Matches: 372, Mismatches: 55, Indels: 49
0.78 0.12 0.10
Matches are distributed among these distances:
148 8 0.02
149 101 0.27
150 8 0.02
151 115 0.31
152 11 0.03
153 7 0.02
154 4 0.01
155 4 0.01
156 7 0.02
157 10 0.03
158 89 0.24
159 6 0.02
160 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.36
Consensus pattern (150 bp):
AAGATGAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATAGGCTTTTCTTGTCAATGAATG
GGTTTTTCTTCATGTTTTCCAAGGCAAACATTCAATTATAATCTGTTTTAATAAAAAATATAAAA
AGTTCAACTTAAAAACATTT
Found at i:7711 original size:170 final size:170
Alignment explanation
Indices: 7407--7933 Score: 673
Period size: 170 Copynumber: 3.1 Consensus size: 170
7397 CATTTAAGAT
* * *
7407 GAGTAATAAGGCTTTTGAAGGCTTGGGTAACTATAAATAGGCTTTTCTTGCCAATAAATGGCTTT
1 GAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTT
* * * * * * * *
7472 TTCTTCATGTTTTCCAATGCAAACATTCAATTACAATCTGTTTTAATAAAAAACATAAGAAAGTT
66 TTCTTCACG-TTTCCAAAGAAAACATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAATT
*
7537 CAACTTAAAATTAATTATGAGGTTATAAAACTATTTAAACA
130 CAACTTAAAATTAATTATGAGATTATAAAACTATTTAAACA
* ** *
7578 GAGTAATAACGCTTTTGAAGGCTTGGGTGACTAT-AATGGGCTTTTCTTGAAAATGAATAGCTTT
1 GAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTT
* * * *
7642 TTCTTCAGGTTTACCAAGGAAAACATTCAATTATAATCTATTTTAACCAAAAATATAAAAAAATT
66 TTCTTCACGTTT-CCAAAGAAAACATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAATT
* * *
7707 CAACTTAAAATCAATTTTGAGATTATAAAACTATTTAAAGA
130 CAACTTAAAATTAATTATGAGATTATAAAACTATTTAAACA
* * * *
7748 GAGTAATAAGTCTCTTGAAGGCTTGGGTGACTATAAATGGACTTTTCTTGCCAATGAATGGGTTT
1 GAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTT
* * * *
7813 TTCTTCACGTTT-CATAAGACAAACACTCAATTATAAACTGTTTTAACTAAAAATTTAAAAAAAA
66 TTCTTCACGTTTCCA-AAGA-AAACATTCAATTATAATCTGTTTTAACAAAAAATAT-AAAAAAA
* * *
7877 TTTAACTTACAATTAATTATGAGATTATAAAACCATTTAAAGC-
128 TTCAACTTAAAATTAATTATGAGATTATAAAACTATTTAAA-CA
7920 GAGTAATAAGGCTT
1 GAGTAATAAGGCTT
Statistics
Matches: 306, Mismatches: 44, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
169 5 0.02
170 147 0.48
171 99 0.32
172 55 0.18
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (170 bp):
GAGTAATAAGGCTTTTGAAGGCTTGGGTGACTATAAATGGGCTTTTCTTGCCAATGAATGGCTTT
TTCTTCACGTTTCCAAAGAAAACATTCAATTATAATCTGTTTTAACAAAAAATATAAAAAAATTC
AACTTAAAATTAATTATGAGATTATAAAACTATTTAAACA
Done.