Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399268.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2537.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2167
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.26

Warning! 644 characters in sequence are not A, C, G, or T


Found at i:1708 original size:171 final size:160

Alignment explanation


    Indices: 1427--1742  Score: 314
    Period size: 171  Copynumber: 1.9  Consensus size: 160

       1417 TAATAATTCG

                                      **      *                          *   
       1427 TTTTAAGTTAAATTTTTTACTCTTTTGGCTAAAATAGATTATAATTGAATGTCTACCTTAAGAAA
          1 TTTTAAGTTAAATTTTTTACTCTTTTACCTAAAACAGATTATAATTGAATGTCTACCTTAACAAA

                         *      *   *       *                               *
       1492 CATGAAGGAAAAGGCATTCATTGGTAAGAAAAGTCTATCTATAGTCACCCATT-CATTCAAAAGT
         66 CATGAAGGAAAAGCCATTCACTGGCAAGAAAAATCTATCTATAGTCACCCATTCCATTC-AAAGC

                    *                                
       1556 CTTATTACTCACTTNNNNNNNNNNTATAATCTCAAAATTGA
        130 CTTATTACCCACTT----------TATAATCTCAAAATTGA

                     *                                                   *   
       1597 TTTTAAGTTGAATTGTTTTACAT-TTTTACCTAAAACAGATTATAATTGAATGTCTACCTTTACA
          1 TTTTAAGTTAAATT-TTTTAC-TCTTTTACCTAAAACAGATTATAATTGAATGTCTACCTTAACA

              **           *                         *        * *     *      
       1661 AAGGTGAA-GAAAATTCCATTCACTGGCAAGAAAAATCTATTTATAGTCAGCTATTCCTTTCAAA
         64 AACATGAAGGAAAA-GCCATTCACTGGCAAGAAAAATCTATCTATAGTCACCCATTCCATTCAAA

                              
       1725 GCCTTATTACCCACTTTA
        128 GCCTTATTACCCACTTTA

       1743 AATGATTTTA


Statistics
Matches: 123,  Mismatches: 19, Indels: 17
        0.77            0.12        0.11

Matches are distributed among these distances:
 161    2  0.02
 170   18  0.15
 171   98  0.80
 172    5  0.04

ACGTcount: A:0.34, C:0.15, G:0.11, T:0.36


Consensus pattern (160 bp):   
TTTTAAGTTAAATTTTTTACTCTTTTACCTAAAACAGATTATAATTGAATGTCTACCTTAACAAA
CATGAAGGAAAAGCCATTCACTGGCAAGAAAAATCTATCTATAGTCACCCATTCCATTCAAAGCC
TTATTACCCACTTTATAATCTCAAAATTGA
Done.