Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2538.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3332
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.32

Warning! 479 characters in sequence are not A, C, G, or T


Found at i:513 original size:170 final size:167

Alignment explanation


    Indices: 29--530  Score: 460
    Period size: 171  Copynumber: 2.9  Consensus size: 167

         19 TGAATATTTT

                           *          *   *                           *   *  
         29 TAAAGACTTATTACTTGCTTTAAATGTTTTGATAATCTCATAATTGATTTAAAGTTGAATTTCTT
          1 TAAAGACTTATTACTCGCTTTAAATGATTTAATAATCTCATAATTGATTTAAA-TTGATTTTTTT

            **                               * *             *               
         94 GCATTTTTTCTTAAAACAGATTATAATTGAATGCCCACCT-TGAGAAACGTGAAGAAAAAGATAT
         65 ATATTTTTT-TT--AACAGATTATAATTGAATGTCTACCTCTGAGAAACATGAAGAAAAAGATAT

                         *   *                  *     
        158 TCATTGGCAAGAACAGTCCATTTATAGT-AGCCCATGCCGTC
        127 TCATTGGCAAGAAAAGTTCATTTATAGTCA-CCCATACCGTC

                  *                        **                      *         
        199 -AAAGGCCTTATTACTCGCTTTAAATGATTTTTTAAGT-TCATAATTGATTTTAAGTTGAATTTT
          1 TAAA-GACTTATTACTCGCTTTAAATGATTTAATAA-TCTCATAATTGA-TTTAAATTG-ATTTT

               *        *                  *   * *   **                     *
        262 TTTTTATTTTTAGTTAACACTGATTATAATTAAATTTTTACAAC-GAGAAACATGAAGAAAAAGC
         62 TTTATATTTTT-TTTAACA--GATTATAATTGAATGTCTACCTCTGAGAAACATGAAGAAAAAGA

            *       **                                  
        326 CATTCATTACCAAGAAAAGTTCATTTATAGTCACCCATACCGTC
        124 TATTCATTGGCAAGAAAAGTTCATTTATAGTCACCCATACCGTC

                 *    *               *                  *                   
        370 TAAAGTCTTACTACTCGCTTTAAATGGTTTAATAATCTCATAATTAATTTGAAATTGATTTTTTT
          1 TAAAGACTTATTACTCGCTTTAAATGATTTAATAATCTCATAATTGATTT-AAATTGATTTTTTT

                            *                               *  *             
        435 ATAGTTTTTTTTCGAATAGATTATAATTGAATGTCTACCTCTG-GAAATATAAAGAAAAAGATAT
         65 ATA-TTTTTTTT--AACAGATTATAATTGAATGTCTACCTCTGAGAAACATGAAGAAAAAGATAT

             *     *              *          
        499 TTATTGGTAAGAAAAG-TCTATCTATAGTCACC
        127 TCATTGGCAAGAAAAGTTC-ATTTATAGTCACC

        531 TATGCCTTCG


Statistics
Matches: 265,  Mismatches: 50, Indels: 34
        0.76            0.14        0.10

Matches are distributed among these distances:
 169    9  0.03
 170  114  0.43
 171  135  0.51
 172    7  0.03

ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39


Consensus pattern (167 bp):   
TAAAGACTTATTACTCGCTTTAAATGATTTAATAATCTCATAATTGATTTAAATTGATTTTTTTA
TATTTTTTTTAACAGATTATAATTGAATGTCTACCTCTGAGAAACATGAAGAAAAAGATATTCAT
TGGCAAGAAAAGTTCATTTATAGTCACCCATACCGTC
Done.