Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399270.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2539.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 736

Length: 1227
ACGTcount: A:0.13, C:0.05, G:0.07, T:0.14

Warning! 750 characters in sequence are not A, C, G, or T


Found at i:98 original size:21 final size:21

Alignment explanation


    Indices: 68--108  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         58 GGTAAGAAAA

                                 
         68 CCAATAAATGGGTTTTTCTTG
          1 CCAATAAATGGGTTTTTCTTG

                 *    *         
         89 CCAATGAATGTGTTTTTCTT
          1 CCAATAAATGGGTTTTTCTT

        109 CATNNNNNNN


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46


Consensus pattern (21 bp):   
CCAATAAATGGGTTTTTCTTG
Done.