Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399277.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2546.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2347
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.12

Warning! 1608 characters in sequence are not A, C, G, or T


Found at i:2152 original size:14 final size:14

Alignment explanation


    Indices: 2133--2163  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       2123 ATTCAATTAC

                        * 
       2133 AATTTTTTTTAATA
          1 AATTTTTTTTAAAA

                          
       2147 AATTTTTTTTAAAA
          1 AATTTTTTTTAAAA

               
       2161 AAT
          1 AAT

       2164 CAAATTAAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (14 bp):   
AATTTTTTTTAAAA
Done.