Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399284.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2552.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1894
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.24

Warning! 740 characters in sequence are not A, C, G, or T


Found at i:1846 original size:171 final size:161

Alignment explanation


    Indices: 1579--1894  Score: 320
    Period size: 171  Copynumber: 1.9  Consensus size: 161

       1569 CTCATAATTG

                                                    **      *                
       1579 ATTTTAAGTTGATTTTTTTAATATTTTTGGTTAAAACTGATTATAATTGAATGTTTACCTTTGGG
          1 ATTTTAAGTTGATTTTTTTAATATTTTTGGTTAAAACTGAACATAATTAAATGTTTACCTTTGGG

                  *                 *                   * *                  
       1644 AACATGGAGAAAAATGAAGTTATTGGCAAGAAAAGCCCATTTATTGTCA-CCAAATCCTTCAAAA
         66 AACATGAAGAAAAATGAAGTTATTAGCAAGAAAAGCCCATTTATAGACACCCAAAT-CTTCAAAA

                   *                        
       1708 GCCTCATTACTCTCTTTAAATAGTTTTATAAC
        130 GCCTCATAACTCTCTTTAAATAGTTTTATAAC

                                                    *                        
       1740 NNNNNNNNNNATTTTAAGTTGAATTTTTTT-ATATTTTTGTTTAAAA-TAGAACATAATTAAATG
          1 ----------ATTTTAAGTTG-ATTTTTTTAATATTTTTGGTTAAAACT-GAACATAATTAAATG

               *            *             *                                  
       1803 TTTTCC-TTGGGAAACCTGAAGAAAAA-GCCA-TTCATTAGCAAGAAAAGCCCATTTATAGACAC
         54 TTTACCTTTGGG-AACATGAAGAAAAATG-AAGTT-ATTAGCAAGAAAAGCCCATTTATAGACAC

                *             *           
       1865 CCAAGTCTTCAAAAGCCTTATAACTCTCTT
        116 CCAAATCTTCAAAAGCCTCATAACTCTCTT


Statistics
Matches: 125,  Mismatches: 14, Indels: 12
        0.83            0.09        0.08

Matches are distributed among these distances:
 170    9  0.07
 171  103  0.82
 172   13  0.10

ACGTcount: A:0.34, C:0.14, G:0.12, T:0.36


Consensus pattern (161 bp):   
ATTTTAAGTTGATTTTTTTAATATTTTTGGTTAAAACTGAACATAATTAAATGTTTACCTTTGGG
AACATGAAGAAAAATGAAGTTATTAGCAAGAAAAGCCCATTTATAGACACCCAAATCTTCAAAAG
CCTCATAACTCTCTTTAAATAGTTTTATAAC
Done.