Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399285.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2553.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7270
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.20

Warning! 3341 characters in sequence are not A, C, G, or T


Found at i:4902 original size:168 final size:167

Alignment explanation


    Indices: 4545--4905  Score: 375
    Period size: 168  Copynumber: 2.1  Consensus size: 167

       4535 NNNNNNNNNN

                          *                                *                 
       4545 TTTGAAGGAATGGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTCTTTAGGTTACTT
          1 TTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATAGCTTTCTTTAGGTTACTT

                  * *            *                 *            **           
       4610 GAGCTAGATATTCAATTATAATATATTTTAACTAAAAATGTAAAAAAATCAACTTAAAATCAATT
         66 GAGCTAAACATTCAATTATAACATATTTTAACTAAAAATCTAAAAAAATCAAAATAAAATCAATT

                                     *        ****
       4675 ATGACATTATAAAACAATTTAAAGCGAGTAATANNNNN
        131 ATGACATTATAAAACAATTTAAAGCAAGTAATA-AGAC

            *****  *   *                                        *    *   *   
       4713 NNNNNAGAAATAGGAGACTATAAATGGACTTTTCTTGCCAATGAAT-GCTTTTTTTATGTTTCTT
          1 TTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATAGCTTTCTTTAGGTTACTT

               *                * * *      *                              *  
       4777 GAGGTAAACATTCAATTATAGCCTGTTTT-ATTGAAAAATCTAAAAAAATTCAAAATAAAATTAA
         66 GAGCTAAACATTCAATTATAACATATTTTAACT-AAAAATCTAAAAAAA-TCAAAATAAAATCAA

                  *          *              *      
       4841 TTATGAGATTATAAAACCATTTAAAGCAAGTACTAAGAC
        129 TTATGACATTATAAAACAATTTAAAGCAAGTAATAAGAC

                           *          
       4880 TTTGAAAGGAATGGGCGACTATAAAT
          1 TTTG-AAGGAATGGGAGACTATAAAT

       4906 AGACCCTTTT


Statistics
Matches: 150,  Mismatches: 40, Indels: 6
        0.77            0.20        0.03

Matches are distributed among these distances:
 166    2  0.01
 167   50  0.33
 168   98  0.65

ACGTcount: A:0.40, C:0.10, G:0.14, T:0.34


Consensus pattern (167 bp):   
TTTGAAGGAATGGGAGACTATAAATGGACTTTTCTTGCCAATGAATAGCTTTCTTTAGGTTACTT
GAGCTAAACATTCAATTATAACATATTTTAACTAAAAATCTAAAAAAATCAAAATAAAATCAATT
ATGACATTATAAAACAATTTAAAGCAAGTAATAAGAC
Done.