Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399290.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2559.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3376
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.12

Warning! 2133 characters in sequence are not A, C, G, or T


Found at i:1898 original size:21 final size:20

Alignment explanation


    Indices: 1874--1912  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1864 TGAGATTATA

                                 
       1874 AAGCTGTTTAAAACGAGTAAT
          1 AAGCT-TTTAAAACGAGTAAT

                    *   *     
       1895 AAGCTTTTCAAAGGAGTA
          1 AAGCTTTTAAAACGAGTA

       1913 GGTGACTCTA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20   11  0.69
  21    5  0.31

ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28


Consensus pattern (20 bp):   
AAGCTTTTAAAACGAGTAAT
Done.