Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399295.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2563.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2085
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.31

Warning! 233 characters in sequence are not A, C, G, or T


Found at i:1225 original size:15 final size:15

Alignment explanation


    Indices: 1202--1231  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1192 TACGCCCTAC

                           
       1202 TCACGGAGTCGATGA
          1 TCACGGAGTCGATGA

                *          
       1217 TCACTGAGTCGATGA
          1 TCACGGAGTCGATGA

       1232 GACTCACCCT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23


Consensus pattern (15 bp):   
TCACGGAGTCGATGA
Done.