Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397458.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2647.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16558

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
224--1581
171
7.9
170
77
6
1015
38
11
14
35
1.81
224--3303
342
8.8
338
70
13
1371
39
11
13
34
1.82
1386--1807
221
1.9
221
81
6
516
41
12
12
33
1.80
1591--2229
171
3.8
171
79
6
633
40
12
12
34
1.81
2244--3303
171
6.2
169
78
6
958
38
11
14
34
1.84
3185--3410
110
2.0
111
87
5
323
41
11
17
29
1.85
3015--3543
281
1.9
281
82
4
665
40
13
15
31
1.85
2845--3702
452
1.9
452
80
5
1002
38
13
14
32
1.85
3297--5752
171
14.4
170
73
7
1548
37
12
14
33
1.84
4235--4274
21
2.0
20
85
14
55
20
12
17
50
1.78
4321--5752
341
4.2
340
76
8
869
39
12
14
33
1.84
6390--6701
171
1.9
160
82
6
308
35
12
15
32
1.85
7055--7965
171
5.3
166
76
7
709
36
13
15
34
1.87
7740--7780
21
2.0
21
90
0
64
17
17
19
46
1.85
7055--7967
342
2.7
339
78
6
944
36
13
15
34
1.87
8218--10561
171
13.7
171
77
7
1977
39
11
13
35
1.81
8259--10563
342
6.7
340
79
5
2234
39
11
13
35
1.81
11528--12053
281
1.9
281
84
3
718
40
12
14
32
1.83
11809--14835
171
17.8
171
74
6
1949
37
12
14
33
1.84
12757--12796
21
1.9
21
89
0
62
17
15
22
45
1.85
14478--14852
170
2.2
172
77
3
391
39
13
12
35
1.82
16172--16504
171
2.0
161
77
8
310
36
11
14
34
1.83

Tables:   1

The End!