Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018399303.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2572.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3463
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.18

Warning! 1807 characters in sequence are not A, C, G, or T


Found at i:1768 original size:171 final size:172

Alignment explanation


    Indices: 1462--1891  Score: 397
    Period size: 172  Copynumber: 2.5  Consensus size: 172

       1452 ATCAGATTTA

                                       *    *              *    *        **  
       1462 AGATTATAAAACCATTTAATGTGAGTATTAAGGCTTTTG-AAGAAATGGGTGGCTAT-AATGGAC
          1 AGATTATAAAACCATTTAATGTGAGTAATAAGACTTTTGAAAG-AATAGGTGACTATAAATAAAC

                   ***       *             **********   *           *   *    
       1525 TTTTCTTGTTAATGAATACCTTTTTCTTCATNNNNNNNNNNGTAGACATTCAATTATAATCTGTT
         65 TTTTCTTACAAATGAATGCCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTACAATATGTT

                                                          
       1590 CTAACCAAAAA-AGTAAAA--ACATTC-AACCTAAAATCAATTAGG
        130 CTAACCAAAAATA-TAAAACGAC-TTCTAA-CTAAAATCAATTAGG

                         *                                 *                *
       1632 AGATTATAAAACCTTTTCAA-GTGAGTAATAAGACTTTTGAAAGAATGGGTGACTATAAATAAAG
          1 AGATTATAAAACCATTT-AATGTGAGTAATAAGACTTTTGAAAGAATAGGTGACTATAAATAAAC

                *    *                                                       
       1696 TTTTTTTACTAATGAATGCCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTACAATATGTT
         65 TTTTCTTACAAATGAATGCCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTACAATATGTT

            *              *            * * *       ** 
       1761 GTAACCAAAAATATACAACGACTTCTAATTTATATCAATTTTG
        130 CTAACCAAAAATATAAAACGACTTCTAACTAAAATCAATTAGG

                       *                    *        *     *            *    
       1804 AGATTATAAAATCATTTAATGTGAGTAATAAGGCTTTTGAAGGAATATGTGACTATAAATGAACT
          1 AGATTATAAAACCATTTAATGTGAGTAATAAGACTTTTGAAAGAATAGGTGACTATAAATAAACT

                  *                
       1869 TTTCTTGCAAATGAATGCCTTTT
         66 TTTCTTACAAATGAATGCCTTTT

       1892 NNNNNNNNNN


Statistics
Matches: 210,  Mismatches: 42, Indels: 14
        0.79            0.16        0.05

Matches are distributed among these distances:
 170   45  0.21
 171   73  0.35
 172   88  0.42
 173    4  0.02

ACGTcount: A:0.36, C:0.12, G:0.14, T:0.36


Consensus pattern (172 bp):   
AGATTATAAAACCATTTAATGTGAGTAATAAGACTTTTGAAAGAATAGGTGACTATAAATAAACT
TTTCTTACAAATGAATGCCTTTTTCTTCATGTTTCTTGAAGTAAACATTCAATTACAATATGTTC
TAACCAAAAATATAAAACGACTTCTAACTAAAATCAATTAGG
Done.